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At least 19 records

Structural insights reveal interplay between LAG-3 homodimerization, ligand binding, and function

Lymphocyte activation gene-3 (LAG-3) is an inhibitory receptor expressed on activated T cells and an emerging immunotherapy target. Domain 1 (D1) of LAG-3, which has been purported to directly interact with major histocompatibility complex class II (MHCII) and fibrinogen-like protein 1 (FGL1), has been the major focus for the development of therapeutic antibodies that inhibit LAG-3 receptor-ligand interactions and restore T cell function. Here, we present a high-resolution structure of glycosylated mouse LAG-3 ectodomain, identifying that cis-homodimerization, mediated through a network of hydrophobic residues within domain 2 (D2), is critically required for LAG-3 function. Additionally, we found a previously unidentified key protein-glycan interaction in the dimer interface that affects the spatial orientation of the neighboring D1 domain. Mutation of LAG-3 D2 residues reduced dimer formation, dramatically abolished LAG-3 binding to both MHCII and FGL1 ligands, and consequentially inhibited the role of LAG-3 in suppressing T cell responses. Intriguingly, we showed that antibodies directed against D1, D2, and D3 domains are all capable of blocking LAG-3 dimer formation and MHCII and FGL-1 ligand binding, suggesting a potential allosteric model of LAG-3 function tightly regulated by dimerization. Furthermore, our work reveals unique epitopes, in addition to D1, that can be targeted for immunotherapy of cancer and other human diseases.

59 BASIC BIOLOGICAL SCIENCES↗

Quantifying the Impact of Lagged Hydrological Responses on the Effectiveness of Groundwater Conservation

Many irrigated agricultural areas seek to prolong the lifetime of their groundwater resources by reducing pumping. However, it is unclear how lagged responses, such as reduced groundwater recharge caused by more efficient irrigation, may impact the long-term effectiveness of conservation initiatives. Here, we use a variably saturated, simplified surrogate groundwater model to: 1) analyze aquifer responses to pumping reductions, 2) quantify time lags between reductions and groundwater level responses, and 3) identify the physical controls on lagged responses. We explore a range of plausible model parameters for an area of the High Plains Aquifer (USA) where stakeholder-driven conservation has slowed groundwater depletion. We identify two types of lagged responses that reduce the long-term effectiveness of groundwater conservation, recharge-dominated and lateral-flow-dominated, with vertical hydraulic conductivity (K Z ) the major controlling variable. When high K z allows percolation to reach the aquifer, more efficient irrigation reduces groundwater recharge. By contrast, when low K z impedes vertical flow, short term changes in recharge are negligible, but pumping reductions alter the lateral flow between the groundwater conservation area and the surrounding regions (lateral-flow-dominated response). For the modeled area, we found that a pumping reduction of 30% resulted in median usable lifetime extensions of 20 or 25 years, depending on the dominant lagged response mechanism (recharge- vs. lateral-flow-dominated). These estimates are far shorter than estimates that do not account for lagged responses. To conclude, results indicate that conservation-based pumping reductions can extend aquifer lifetimes, but lagged responses can create a sizable difference between the initially perceived and actual long-term effectiveness.

54 ENVIRONMENTAL SCIENCES↗

Identification of Performance Shaping Factor Lag and Linger Effects for Dynamic Human Reliability Analysis: Application of Experimental Data

Many researchers have emphasized the importance of dynamic probabilistic safety assessment (PSA), which highlights the necessity of studies for dynamic human reliability analysis (HRA). Dynamic HRA concentrates on a dynamic account of human actions or how performance shaping factors (PSFs) can dynamically modify the human error probability (HEP) over time. In contrast, existing static HRA does not consider human actions as changes over time or event progressions. Accordingly, previous research on dynamic HRA conceptually suggested PSF lag and linger effects to treat dependence between operator actions in dynamic HRA versus existing approaches. As follow-up research, this study attempted to identify PSF lag and linger effects for dynamic HRA on the basis of experimental data. Firstly, mathematical models for PSF lag and linger effects were developed based on a literature survey in the field of biology. Secondly, we analyzed experimental scenarios from a control room study to identify operator actions considered in PSA. Lastly, based on the experimental data, the effect of the stress PSF with lag and linger effects was compared to that without PSF lag and linger effects. This paper concludes with an overall discussion of PSF lag and linger effects based on the relation between the stress PSF and error occurrence.

99 GENERAL AND MISCELLANEOUS↗

OzDES Reverberation Mapping Programme: the first Mg ii lags from 5 yr of monitoring

ABSTRACT Reverberation mapping is a robust method to measure the masses of supermassive black holes outside of the local Universe. Measurements of the radius–luminosity (R−L) relation using the Mg ii emission line are critical for determining these masses near the peak of quasar activity at z ≈ 1−2, and for calibrating secondary mass estimators based on Mg ii that can be applied to large samples with only single-epoch spectroscopy. We present the first nine Mg ii lags from our 5-yr Australian Dark Energy Survey reverberation mapping programme, which substantially improves the number and quality of Mg ii lag measurements. As the Mg ii feature is somewhat blended with iron emission, we model and subtract both the continuum and iron contamination from the multiepoch spectra before analysing the Mg ii line. We also develop a new method of quantifying correlated spectroscopic calibration errors based on our numerous, contemporaneous observations of F-stars. The lag measurements for seven of our nine sources are consistent with both the H β and Mg ii R−L relations reported by previous studies. Our simulations verify the lag reliability of our nine measurements, and we estimate that the median false positive rate of the lag measurements is $4{{\ \rm per\ cent}}$.

79 ASTRONOMY AND ASTROPHYSICS↗

Multichannel photoelectron phase lag across atomic barium autoionizing resonances

Phase lag associated with coherent control where an excited system decays into more than one product channel has been subjected to numerous investigations. Although previous theoretical studies have treated the phase lag across resonances in model calculations, quantitative agreement has never been achieved between the theoretical model and an experimental measurement of the phase lag from the ω-2ω ionization of atomic barium. Yamazaki and Elliot, Phys. Rev. Lett. 98, 053001 (2007); Phys. Rev. A 76, 053401 (2007), suggesting that a toy model with phenomenological parameters is inadequate to describe the observed phase lag behavior. Here the phase lag is treated quantitatively in a multichannel coupling formulation, and our calculation based on a multichannel quantum defect and R-matrix treatment achieves good agreement with the experimental observations. Our treatment also develops formulas to describe the effects of hyperfine depolarization on multiphoton ionization processes. Moreover, we identify resonances between Ba + 5d 3/2 and 5d 5/2 thresholds that have apparently never been experimentally observed and classified.

74 ATOMIC AND MOLECULAR PHYSICS↗

OzDES Reverberation Mapping Programme: Mg ii lags and R − L relation

ABSTRACT The correlation between the broad line region radius and continuum luminosity (R–L relation) of active galactic nuclei (AGNs) is critical for single-epoch mass estimates of supermassive black holes (SMBHs). At z ∼ 1–2, where AGN activity peaks, the R–L relation is constrained by the reverberation mapping (RM) lags of the Mg ii line. We present 25 Mg ii lags from the Australian Dark Energy Survey RM project based on 6 yr of monitoring. We define quantitative criteria to select good lag measurements and verify their reliability with simulations based on both the damped random walk stochastic model and the rescaled, resampled versions of the observed light curves of local, well-measured AGN. Our sample significantly increases the number of Mg ii lags and extends the R–L relation to higher redshifts and luminosities. The relative iron line strength $\mathcal {R}_{\rm Fe}$ has little impact on the R–L relation. The best-fitting Mg iiR–L relation has a slope α = 0.39 ± 0.08 with an intrinsic scatter $\sigma _{\rm rl} = 0.15^{+0.03}_{-0.02}$ . The slope is consistent with previous measurements and shallower than the H β R–L relation. The intrinsic scatter of the new R–L relation is substantially smaller than previous studies and comparable to the intrinsic scatter of the H β R–L relation. Our new R–L relation will enable more precise single-epoch mass estimates and SMBH demographic studies at cosmic noon.

79 ASTRONOMY AND ASTROPHYSICS↗

The Lick AGN Monitoring Project 2016: Velocity-resolved Hβ Lags in Luminous Seyfert Galaxies

We carried out spectroscopic monitoring of 21 low-redshift Seyfert 1 galaxies using the Kast double spectrograph on the 3 m Shane telescope at Lick Observatory from 2016 April to 2017 May. Targeting active galactic nuclei (AGNs) with luminosities of λL$_{λ}$(5100 Å) ≈ 10$^{44}$ erg s$^{-1}$ and predicted Hβ lags of ~20–30 days or black hole masses of 10$^{7}$–10$^{8.5}$M$_{⊙}$, our campaign probes luminosity-dependent trends in broad-line region (BLR) structure and dynamics as well as to improve calibrations for single-epoch estimates of quasar black hole masses. Here we present the first results from the campaign, including Hβ emission-line light curves, integrated Hβ lag times (8–30 days) measured against V-band continuum light curves, velocity-resolved reverberation lags, line widths of the broad Hβ components, and virial black hole mass estimates (10$^{7.1}$–10$^{8.1}$M$_{⊙}$). Our results add significantly to the number of existing velocity-resolved lag measurements and reveal a diversity of BLR gas kinematics at moderately high AGN luminosities. AGN continuum luminosity appears not to be correlated with the type of kinematics that its BLR gas may exhibit. Follow-up direct modeling of this data set will elucidate the detailed kinematics and provide robust dynamical black hole masses for several objects in this sample.

79 ASTRONOMY AND ASTROPHYSICS↗

Lagged Wetland CH 4 Flux Response in a Historically Wet Year

While a stimulating effect of plant primary productivity on soil carbon dioxide (CO 2 ) emissions has been well documented, links between gross primary productivity (GPP) and wetland methane (CH 4 ) emissions are less well investigated. Determination of the influence of primary productivity on wetland CH 4 emissions (FCH 4 ) is complicated by confounding influences of water table level and temperature on CH 4 production, which also vary seasonally. Here, in this work, we evaluate the link between preceding GPP and subsequent FCH 4 at two fens in Wisconsin using eddy covariance flux towers, Lost Creek (US-Los) and Allequash Creek (US-ALQ). Both wetlands are mosaics of forested and shrub wetlands, with US-Los being larger in scale and having a more open canopy. Co-located sites with multi-year observations of flux, hydrology, and meteorology provide an opportunity to measure and compare lag effects on FCH4 without interference due to differing climate. Daily average FCH4 from US-Los reached a maximum of 47.7 ηmol CH 4 m -2 s -1 during the study period, while US-ALQ was more than double at 117.9 ηmol CH 4 m -2 s -1 . The lagged influence of GPP on temperature-normalized FCH4 (T air -FCH 4 ) was weaker and more delayed in a year with anomalously high precipitation than a following drier year at both sites. FCH 4 at US-ALQ was lower coincident with higher stream discharge in the wet year (2019), potentially due to soil gas flushing during high precipitation events and lower water temperatures. Better understanding of the lagged influence of GPP on FCH 4 due to this study has implications for climate modeling and more accurate carbon budgeting.

59 BASIC BIOLOGICAL SCIENCES↗

Coherent-control phase lag across doubly excited atomic strontium resonances in an ω - 2 ω interference scheme

Accurate calculations of phase lag associated with coherent control where an excited system decays into more than one product channel have recently been reported for atomic barium in Wang and Greene [Y. Wang and C. H. Greene, Phys. Rev. A 105, 013113 (2022)]. The present study extends the calculations to make predictions of that observable for another alkaline-earth-metal atom, strontium, with a discussion of its spectrum and phase lag for energies between the Sr + 4⁢d 3/2 and 4⁢d 5/2 thresholds. Here, we explore the physics influenced by the electron correlations of strontium and the long-range Coulomb potential. The behavior of the phase lag cannot be simply addressed by a time-delay analysis, although the latter is often used to address the prominent channel of resonance decay of doubly excited states.

74 ATOMIC AND MOLECULAR PHYSICS↗

Reduced Model of Ionization Lag in Intense Laser-Produced Plasmas

A physics-based empirical formula is derived to predict the ionization lag in underdense plasmas generated by an intense laser. Time-dependent nonlocal thermodynamic equilibrium calculations demonstrate significantly delayed ionization, due to rapid changes in plasma conditions, which critically impacts plasma properties such as opacity, emissivity, and heat transport. The reduced model, based on these calculations, enables the estimation of ionization lag without requiring in-depth knowledge of nonlocal thermodynamic equilibrium modeling. Furthermore, modeling reveals that the two-step ionization process—collisional excitation followed by photoionization—plays a crucial role in this ionization delay, with collisional excitation setting the timescale for ionization. Simulations across a range of elements, from beryllium to germanium, demonstrate that ionization lag is a widespread phenomenon, underscoring the importance of incorporating such processes into ionization modeling in radiation hydrodynamic simulations for various laser-plasma experiments.

direct drive↗

Climate lags and genetics determine phenology in quaking aspen ( Populus tremuloides )

Spatiotemporal patterns of phenology may be affected by mosaics of environmental and genetic variation. Environmental drivers may have temporally lagged impacts, but patterns and mechanisms remain poorly known. Here, we combine multiple genomic, remotely sensed, and physically modeled datasets to determine the spatiotemporal patterns and drivers of canopy phenology in quaking aspen, a widespread clonal dioecious tree species with diploid and triploid cytotypes. We show that over 391 km 2 of southwestern Colorado: greenup date, greendown date, and growing season length vary by weeks and differ across sexes, cytotypes, and genotypes; phenology has high phenotypic plasticity and heritabilities of 31–61% (interquartile range); and snowmelt date, soil moisture, and air temperature predict phenology, at temporal lags of up to 3 yr. Our study shows that lagged environmental effects are needed to explain phenological variation and that the effect of cytotype on phenology is obscured by its correlation with topography. Phenological patterns are consistent with responses to multiyear accumulation of carbon deficit or hydraulic damage.

carbon allocation↗

The dynamic synthesis time-lag control for the 1.3 GHz LCLS-II Cryomodule test at Fermilab

The 1.3GHz LCLS-II Cryomodule (CM) has 8 cavities and each cavity has 9 RF cells and 80W heater. The 1.3GHz LCLS-II CM is 12.2-meter-long and contains a total 241.3 liters (equivalent liquid) of liquid helium, which is filling up by the 4KW@2.0K cryogenic plant at the Fermilab Cryomodule Test Facility (CMTF). The dynamic synthesis 2K cryogenic control system is built to control the long time-lag, unstable CM cryogenic system, under different modes operations. A report on the results obtained from the dynamic synthesis long time-lag control in the CMTF 1.3GHz CM test will be presented.

43 PARTICLE ACCELERATORS↗

An Approach to Dependence Assessment in Human Reliability Analysis: Application of Lag and Linger Effects

Dependence assessment refers to an approach used in human reliability analysis (HRA) to adjust a human error probability (HEP) for the following action by considering the impact of the preceding action. It has been known to significantly affect the overall results of probabilistic safety assessment (PSA). If the dependence assessment is not adequate, the result could be unconvincing for explaining the operator failures in the context of PSA. To date, several methods and some recent research have identified suggestions for treating dependence issues in HRA; however, these are still exclusively based on the intrinsic approach of the Technique for Human Error Rate Prediction (THERP), an HRA method. THERP inevitably has a challenge with the subjectivity of expert evaluation as well as the requirement for PSA and HRA expertise with resource-intensive and time-consuming processes. This paper suggests an approach to dependence assessment that could not only minimize the influence of expert judgment, but also saves time to perform the analysis with reasonable manpower. It modifies existing HRA methods with considering lag and linger effects to apply dependence effects for them. Based on a representative HRA method, i.e., Standardized Plant Analysis Risk - HRA (SPAR-H), guidance for how to apply lag and linger effects for the HRA method is suggested. Then, an investigation is carried out to compare quantification results of the revised HRA method with that of the original approach based on experimental data.

99 GENERAL AND MISCELLANEOUS↗

SMBH binary candidate PKS J2134−0153: possible multi-band periodic variability and inter-band time lags

ABSTRACT Studying the periodic flux-variation behaviour of blazars is vital for probing supermassive black hole binaries and the kinematics of relativistic jets. In this work, we report the detection of multi-band possible periodic variations of the blazar PKS J2134−0153, including infrared ($1.6(\pm 0.4)\times 10^3$ day) and optical ($1.8(\pm 1)\times 10^3$ day) wavelengths. The periods in the infrared and optical bands are statistically consistent with the period in the radio band ($P_{\mathrm{Radio}} = 1760\pm 33$ days, obtained from our previous work). Moreover, flux variations in different bands are correlated with evident inter-band time delays, and the time lags of infrared and optical emission with respect to radio emission are $(3.3\pm 2.3)\times 10^{2}$ days and $(3.0\pm 2.3)\times 10^{2}$ days, respectively. The cross-correlations indicate a common origin of radio, infrared, and optical emission. The relative positions between emission regions of infrared and optical emission and radio emission are estimated according to the time lags, i.e. $0.37\pm 0.26$ and $0.33\pm 0.26$ pc. The relative distances seem to be quantitatively consistent with the theoretical prediction.

Ren, Guo-Wei (ORCID:0000000214978371)↗

Dust Reverberation of 3C 273: Torus Structure and Lag–Luminosity Relation

We monitored the z = 0.158 quasar 3C 273 between 2015 and 2019 in the optical (BVrz) and near-infrared (JHK) with the aim to perform dust reverberation mapping. Accounting for host galaxy and accretion disk contributions, we obtained pure dust light curves in JHK. Cross correlations between the V band and the dust light curves yield an average rest-frame delay for the hot dust of τ {sub cent} ∼ 410 days. This is a factor of two shorter than that expected from the the dust ring radius R {sub x} ∼ 900 lt-day reported from interferometric studies. The dust covering factor (CF) is about 8%, much smaller than that predicted from the half covering angle of 45° found for active galactic nuclei (AGNs). We analyze the asymmetric shape of the correlation functions and explore whether an inclined biconical bowl-shaped dust torus geometry could bring these findings (τ {sub cent}, R {sub x} and CF) into a consistent picture. The hot varying dust emission originates from the edge of the bowl rim with a small covering angle 40° < θ < 45°, and we see only the near side of the biconus. Such a dust gloriole with R {sub x} = 900 ± 200 lt-day and an inclination 12° matches the data remarkably well. Comparing the results of 3C 273 with literature for less luminous AGN, we find a lag–luminosity relation τ ∝ L {sup α} with α = 0.33–0.40, flatter than the widely adopted relation with α ∼ 0.5. We address several explanations for the new lag–luminosity relation.

79 ASTRONOMY AND ASTROPHYSICS↗

Autoregressive distributed lag-based dynamic uniformity modeling and monitoring approaches for superconductor manufacturing

High-temperature superconductors (HTS), known for their high efficiency and low energy loss, have found profound applications across various fields, driving the demand for long, uniformly performing tapes. However, ensuring uniform performance over extended lengths of HTS tapes, often characterized by the consistency of critical current, remains challenging due to fluctuations in growth conditions during manufacturing. Here, to elucidate the mechanisms underlying variations in tape uniformity and enable real-time monitoring of associated parameters, we propose an Autoregressive Distributed Lag (ADL)-based Dynamic Uniformity Modeling and Monitoring (ADUM2) approach. This method integrates uniformity measurement, the identification of critical process parameters and real-time monitoring within the manufacturing process. The ADUM2 approach is applied to the advanced metal organic chemical vapor deposition (A-MOCVD) process, a pilot-scale method for superconductor manufacturing. Our model demonstrates superior performance compared to benchmark methods, accounting for over 80% of the total variance in the data and identifying 13 key process parameters influencing the uniformity of HTS tapes. This study offers significant insights into the high-temperature superconductor manufacturing process and holds the potential to facilitate the production of cost-effective, uniformly performing long superconducting tapes in the future.

autoregressive distributed lag analysis↗

Standardizing reverberation-measured Mg II time-lag quasars, by using the radius–luminosity relation, and constraining cosmological model parameters

ABSTRACT We use 78 reverberation-measured Mg II time-lag quasars (QSOs) in the redshift range 0.0033 ≤ z ≤ 1.89 to constrain cosmological parameters in six different cosmological models. The basis of our method is the use of the radius–luminosity or R−L relation to standardize these 78 Mg II QSOs. In each cosmological model, we simultaneously determine R−L relation and cosmological model parameters, thus avoiding the circularity problem. We find that the R−L relation parameter values are independent of the cosmological model used in the analysis, thus, establishing that current Mg II QSOs are standardizable candles. Cosmological constraints obtained using these QSOs are significantly weaker than, but consistent with, those obtained from a joint analysis of baryon acoustic oscillation (BAO) observations and Hubble parameter [H(z)] measurements. So, we also analyse these QSOs in conjunction with the BAO + H(z) data and find cosmological constraints consistent with the standard spatially flat ΛCDM model as well as with mild dark energy dynamics and a little spatial curvature. A larger sample of higher quality reverberation-measured QSOs should have a smaller intrinsic dispersion and so should provide tighter constraints on cosmological parameters.

79 ASTRONOMY AND ASTROPHYSICS↗

OzDES reverberation mapping program: Lag recovery reliability for 6-yr C iv analysis

ABSTRACT We present the statistical methods that have been developed to analyse the OzDES reverberation mapping sample. To perform this statistical analysis we have created a suite of customizable simulations that mimic the characteristics of each source in the OzDES sample. These characteristics include: the variability in the photometric and spectroscopic light curves, the measurement uncertainties, and the observational cadence. By simulating the sources in the OzDES sample that contain the C iv emission line, we developed a set of criteria that rank the reliability of a recovered time-lag depending on the agreement between different recovery methods, the magnitude of the uncertainties, and the rate at which false positives were found in the simulations. These criteria were applied to simulated light curves and these results used to estimate the quality of the resulting Radius–Luminosity relation. We grade the results using three quality levels (gold, silver, and bronze). The input slope of the R–L relation was recovered within 1σ for each of the three quality samples, with the gold standard having the lowest dispersion with a recovered a R–L relation slope of 0.454 ± 0.016 with an input slope of 0.47. Future work will apply these methods to the entire OzDES sample of 771 AGN.

79 ASTRONOMY AND ASTROPHYSICS↗