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At least 19 records

Normalization Method and Application for MODIS TEB Assessments using Earth Scene Measurements

Selected Earth targets are commonly used for satellite sensor calibration assessments (e.g. sensor stability and inter-comparisons). Moreover, typical scenes used for the calibration assessment of the thermal emissive bands (TEBs) includeDome Concordia (Dome-C), ocean, desert, and deep convective clouds (DCC). Reference data used for these calibration assessments can come from another band, another instrument, or ground measurements. The Dome-C site, covered with uniformly-distributed permanent snow, is normally used for the assessment of the TEBsat cold temperatures. Furthermore, ocean and desert measurements prove useful for scenes with higher temperatures. The DCC, one of the most consistent and coldest targets, can be used for the TEBs calibration and product stability assessments. MODIS band 31 (~ 11 m) can be used as a reference for these scenes. However, measurements over these scenes have seasonal variations, and the DCC brightness temperatures (BTs) have asymmetrical distributions. These features can introduce additional uncertainty to the stability assessments. A normalization method is applied by using an empirical model to derive reference-dependent BTs. Using the developed empirical model, measurements can be normalized to a reference BT in order to enhance the calibration assessment’s accuracy. This method is evaluated using all four scene types (i.e. ocean, desert, snow (Dome-C), and DCC) and applied to all the Terra and Aqua MODIS TEBs. Stability assessments over the instruments’ entire data records are presented and discussed. The technique can be applied in future efforts to support MODIS TEBs calibration assessments.

MODIS TEB↗

Lunar paleointensities via the IRMs normalization method and the early magnetic history of the moon

A method for determining a planetary body's magnetic field environment over time is proposed. This relative paleointensity method is based on the normalization of natural remanence to saturation remanence magnetization as measured after each sample is exposed to a strong magnetic field. It is shown that this method is well suited to delineating order-of-magnitude changes in magnetizing fields.

Cisowski, S. M.↗

Comparison of Finite-Difference and Analytical Microwave Calculation Methods

Normal modes and power absorption distribution in microwave cavities containing lossy dielectric samples were calculated for problems of interest in materials processing. The calculations were performed both using a commercially available finite-difference electromagnetic solver and by numerical evaluation of exact analytic expressions.

power↗

Spectroradiometric calibration of the Thematic Mapper and Multispectral Scanner system

The newly built Caste spectropolarimeters gave satisfactory performance during tests in the solar radiometer and helicopter modes. A bandwidth normalization technique based on analysis of the moments of the spectral responsivity curves was used to analyze the spectral bands of the MSS and TM subsystems of LANDSAT 4 and 5 satellites. Results include the effective wavelength, the bandpass, the wavelength limits, and the normalized responsivity for each spectral channel. Temperature coefficients for TM PF channel 6 were also derived. The moments normalization method used yields sensor parameters whose derivation is independent of source characteristics (i.e., incident solar spectral irradiance, atmospheric transmittance, or ground reflectance). The errors expected using these parameters are lower than those expected using other normalization methods.

Palmer, J. M.↗

Effective bandwidths for Landsat-4 and Landsat-D' multispectral scanner and thematic mapper subsystems

The spectral bands of the Multispectral Scanner and Thematic Mapper subsystems of Landsat-4 and Landsat-D' have been analyzed using a bandwidth normalization technique based on analysis of the moments of the spectral responsitivity curves. The results include the effective wavelength, the bandpass, the wavelength limits, and the normalized responsivity for each spectral channel. In addition, temperature coefficients for TM PF Channel 6 have been derived. The moments normalization method employed yields sensor parameters whose derivation is independent of source characteristics (i.e., incident solar spectral irradiance, atmospoheric transmittance, or ground reflectance). The errors expected using these parameters are lower than those expected using other normalization methods.

Palmer, J. M.↗

Numerical solution of the vertical structure equation in the normal mode method

In the present model of multilayered stability stratification, aimed at obtaining the analytic eigensolutions of the vertical structure equation, each layer is characterized by its own static stability value. By requiring continuity of pressure and vertical velocity across each interface level, and by imposing suitable upper and lower boundary conditions, matching eigensolutions are obtained in terms of the Bessel functions. Attention is given to an explicit example of a double-layered stratified atmosphere which demonstrates the mathematical manipulations involved; the resultant vertical structure functions are used to check the accuracy of the numerical solutions by the finite difference and finite element methods.

Sasaki, Y. K.↗

Using DAPPER to extract the photon strength function of 58 Fe using the inverse Oslo and shape methods

The photon strength function of 58 Fe has been extracted using both the Oslo and Shape methods from particle–γ coincidence data measured using the Detector Array for Photons, Protons, and Exotic Residues, which probes nuclei utilizing (d,p) reactions in inverse kinematics. Four particle–γ coincidence matrices, each constructed with different treatments of the γ–ray energies, are explored in order to observe the impact on the resulting nuclear level density and photon strength. The final photon strength function reported is found to agree well with previous Oslo measurements of other iron isotopes. Systematic uncertainties are included, using different model parameters and their reported errors to perform the Oslo method normalization. The model-independent Shape method is explored and the functional form of the photon strength function obtained is in agreement with the Oslo method results. A low-energy enhancement is not reported for 58 Fe in this work given possible subtraction issues originating from strongly populated states.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Using DAPPER to extract the photon strength function of 58Fe using the inverse Oslo and shape methods

The photon strength function of 58 Fe has been extracted using both the Oslo and Shape methods from particle-γ coincidence data measured using the Detector Array for Photons, Protons, and Exotic Residues, which probes nuclei utilizing (d,p) reactions in inverse kinematics. Four particle-γ coincidence matrices, each constructed with different treatments of the γ-ray energies, are explored in order to observe the impact on the resulting nuclear level density and photon strength. The final photon strength function reported is found to agree well with previous Oslo measurements of other iron isotopes. Systematic uncertainties are included, using different model parameters and their reported errors to perform the Oslo method normalization. The model-independent Shape method is explored and the functional form of the photon strength function obtained is in agreement with the Oslo method results. A low-energy enhancement is not reported for 58 Fe in this work given possible subtraction issues originating from strongly populated states.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

OmicsMLMentor: A Web Application for Guided Machine Learning Analysis of Omics Data

Expression-based omics technologies (e.g. proteomics, metabolomics, transcriptomics, etc.) increasingly rely on supervised and unsupervised machine learning (ML) models to find key biomolecules distinguishing conditions, identify natural groupings in biological data, or generate predictions for outcomes of interest. Fitting ML models to omics data presents several challenges, including handling missing data, selecting a normalization method, choosing a valid model, and optimizing hyperparameters, all requiring statistical programming skills to address these challenges. Thus, the open-source web application SLOPE was designed to lower the barrier to ML modeling for omics data. SLOPE supports the fitting of 15 ML models (10 supervised and 5 unsupervised) tailored to omics datasets, such as proteomics, metabolomics, lipidomics, and transcriptomics. SLOPE offers several omics-specific features, including methods for handling missingness (imputation, conversion, removal), normalization tests, ranking of models based on the structure of a user’s data and user input, and optimal hyperparameter selections using cross-validation splits. By streamlining ML workflows for omics analysis, SLOPE address critical gaps in existing online web tools, facilitating a broader adoption of these models for omics research. Here, SLOPE is applied to data from a lignin exposure study to highlight the workflow for fitting both supervised and unsupervised models to data.

lipidomics↗

A comparison of the bounded derivative and the normal-mode initialization methods using real data

Application of the bounded-derivative and normal-mode methods to a simple linear barotropic model at a typical middle latitude shows that the two methods lead to identical constraints up to a certain degree of approximation. Beyond this accuracy the two methods may differ from each other. When applied to a global nonlinear barotropic model using real data, again the two methods lead to similar balanced initial states. The gravity oscillations in the unbalanced height field, which have amplitudes of up to 60 m with a dominant periodicity of about 5 to 6 h, are practically eliminated by both initialization methods. The rotational wind component is smooth even for the unbalanced initial state. The small-scale spatial features of the irrotational wind component are drastically reduced by initialization. Both the nonlinear normal-mode and the bounded-derivative initialization methods yield similar divergence fields centered around the areas of highest orography. The comparison shows that there is no significant loss of information in the mass and momentum fields, despite the fact that the bounded-derivative method employs only the original, rotational wind component to construct a balanced initial state compared to the normal-mode method, which, in addition, makes use of the unbalanced divergent wind and height fields.

Semazzi, F. H. M.↗

Parallelized Quadrupole Simulations of Thermographic Responses of Composites

Thermography has been shown to be a viable technique for inspection of composites. Model inversion of the thermography data requires a fast method for performing the forward problem. Viable numerical methods for the thermal response forward problem are finite element, finite difference and the quadrupole method. Normally both the finite element and finite difference methods solve for the thermal response in the time domain which limits one’s ability to increase the speed of the simulation by parallelization. In contrast, the quadrupole method solves for the Laplace transform of the thermal response. One of the features of the Laplace transform methodology is the solution at any discrete time is independent of the solution at all other times. Therefore, it is easy to separate into a set of independent calculations with each of the times of interest being performed in parallel. Additionally, the numeric inversion of the Laplace transform typically involves numerically solving for the Laplace transform at multiple Laplace frequencies. Each of those solutions are also independent of solutions at other frequencies and can be calculated in parallel. By parallelization of this method, it is possible to perform the simulations of three-dimensional configurations in seconds. When the input stimulus for thermal response is a delta function heat flux (a reasonable approximation for flash heating), the thermal response is smooth. For this case, it is possible to accurately estimate the thermal response at any time within a given time interval from a set of simulations separated by exponentially increasing time steps. From these simulations, it is possible to accurately interpolate to find the response at intermediate times by a spline interpolation of the logarithm of time versus logarithm of temperature. The thermal response with exponential time stepping is shown to produce values for the thermal response which are within 1% of values within the time interval. The simulations are compared to finite element simulations of the same inspection configurations. The simulations are also compared to the thermographic measurements on composites where shape and depth of the delaminations are obtained from other inspection methods.

Thermography↗

Parallelized Quadrupole Simulations of Thermographic Responses of Composites

Thermography has been shown to be a viable technique for inspection of composites. Model inversion of the thermography data requires a fast method for performing the forward problem. Viable numerical methods for the thermal response forward problem are finite element, finite difference and the quadrupole method. Normally both the finite element and finite difference methods solve for the thermal response in the time domain which limits one’s ability to increase the speed of the simulation by parallelization. In contrast, the quadrupole method solves for the Laplace transform of the thermal response. One of the features of the Laplace transform methodology is the solution at any discrete time is independent of the solution at all other times. Therefore, it is easy to separate into a set of independent calculations with each of the times of interest being performed in parallel. Additionally, the numeric inversion of the Laplace transform typically involves numerically solving for the Laplace transform at multiple Laplace frequencies. Each of those solutions are also independent of solutions at other frequencies and can be calculated in parallel. By parallelization of this method, it is possible to perform the simulations of three-dimensional configurations in seconds. When the input stimulus for thermal response is a delta function heat flux (a reasonable approximation for flash heating), the thermal response is smooth. For this case, it is possible to accurately estimate the thermal response at any time within a given time interval from a set of simulations separated by exponentially increasing time steps. From these simulations, it is possible to accurately interpolate to find the response at intermediate times by a spline interpolation of the logarithm of time versus logarithm of temperature. The thermal response with exponential time stepping is shown to produce values for the thermal response which are within 1% of values within the time interval. The simulations are compared to finite element simulations of the same inspection configurations. The simulations are also compared to the thermographic measurements on composites where shape and depth of the delaminations are obtained from other inspection methods.

Thermography↗

Normalization and Implementation of Three Gravitational Acceleration Models

Unlike the uniform density spherical shell approximations of Newton, the consequence of spaceflight in the real universe is that gravitational fields are sensitive to the asphericity of their generating central bodies. The gravitational potential of an aspherical central body is typically resolved using spherical harmonic approximations. However, attempting to directly calculate the spherical harmonic approximations results in at least two singularities that must be removed to generalize the method and solve for any possible orbit, including polar orbits. Samuel Pines, Bill Lear, and Robert Gottlieb developed three unique algorithms to eliminate these singularities. This paper documents the methodical normalization of two of the three known formulations for singularity-free gravitational acceleration (namely, the Lear and Gottlieb algorithms) and formulates a general method for defining normalization parameters used to generate normalized Legendre polynomials and Associated Legendre Functions (ALFs) for any algorithm. A treatment of the conventional formulation of the gravitational potential and acceleration is also provided, in addition to a brief overview of the philosophical differences between the three known singularity-free algorithms.

Eckman, Randy A.↗

Evaluation of normalization strategies for mass spectrometry-based multi-omics datasets

Introduction Data normalization is crucial for multi-omics integration, reducing systematic errors and maximizing the likelihood of discovering true biological variation. Most studies assess normalization for a single omics type or use datasets from separate experiments. Few address time-course data, where normalization might bias temporal differentiation. In this study, we compared common normalization methods and a machine learning approach, Systematical Error Removal using Random Forest (SERRF), using multi-omics datasets generated from the same experiment—even from the same cell lysate. Objectives To develop a straightforward process to assess normalization effects and identify the most robust methods across multi-omics datasets. Methods We analyzed metabolomics, lipidomics, and proteomics datasets from primary human cardiomyocytes and motor neurons exposed to acetylcholine-active compounds over time. Normalization effectiveness was evaluated based on improvement in QC features consistency and observing the change in treatment and time-related variance. Results Probabilistic Quotient Normalization (PQN) and Locally Estimated Scatterplot Smoothing (LOESS) QC were identified as optimal for metabolomics and lipidomics, while PQN, Median, and LOESS normalization excelled for proteomics. These methods consistently enhanced QC feature consistency in metabolomics and lipidomics, and preserved time-related variance or treatment-related variance in proteomics, demonstrating their effectiveness and robustness. SERRF normalization, applied only to metabolomics in this study, outperformed other methods in some datasets but inadvertently masked treatment-related variance in others. Conclusion Our evaluation identified PQN and LoessQC as the top methods for metabolomics and lipidomics, and PQN, Median, and Loess normalization for proteomics, in multi-omics integration in a temporal study.

60 APPLIED LIFE SCIENCES↗