Automatic Parallelization and OpenMP Offloadingof Fortran Array Notation
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Computer science↗
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Point containment algorithms for constructive solid geometry with unbounded primitives
Here, we present several algorithms for evaluating point containment in constructive solid geometry (CSG) trees with unbounded primitives. Three algorithms are presented based on postfix, prefix, and infix notations of the CSG binary expression tree. We show that prefix and infix notations enable short-circuiting logic, which reduces the number of primitives that must be checked during point containment. To evaluate the performance of the algorithms, each algorithm was implemented in the OpenMC Monte Carlo particle transport code, which relies on CSG to represent solid bodies through which subatomic particles travel. Two sets of tests were carried out. First, the execution time to generate a rasterized image of a 2D slice of three CSG models of varying complexity was measured. Use of both prefix and infix notations offered significant speedup over the postfix notation that has traditionally been used in particle transport codes, with infix resulting in a 6 x reduction in execution time relative to postfix for a model of a tokamak fusion device. We then measured the execution time of neutron transport simulations of the same three models using each of the algorithms. The results and performance improvements reveal the same trends as for the rasterization test, with a 5.52 x overall speedup using the infix notation relative to the original postfix notation in OpenMC for the tokamak model.
70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
Deciphering spin-parity assignments of nuclear levels
Spin-parity assignments of nuclear levels are critical for understanding nuclear structure and reactions. However, inconsistent notation conventions and ambiguous reporting in research papers often lead to confusion and misinterpretations. Here, this paper examines the policies of the Evaluated Nuclear Structure Data File (ENSDF) and the evaluations by Endt and collaborators, highlighting key differences in their approaches to spin-parity notation. Sources of confusion are identified, including ambiguous use of strong and weak arguments and the conflation of new experimental results with prior constraints. Recommendations are provided to improve clarity and consistency in reporting spin-parity assignments, emphasizing the need for explicit notation conventions, clear differentiation of argument strengths, community education, and separate reporting of new findings. These steps aim to enhance the accuracy and utility of nuclear data for both researchers and evaluators.
Experimental Nuclear Physics↗
Crystal and electronic structure of the ternary Zintl bismuthide BaLiBi
Reported is the accurate refinement of the structure of the ternary bismuthide BaLiBi, based on single-crystal X-ray diffraction data. This compound crystallizes with the ZrBeSi structure type with the space group P6 3 /mmc (no. 194), a=4.9917(6) Å, c=9.079(2) Å, V=195.92(7) Å 3 with two formula units per unit cell. In addition to being a colored ternary variant of the AlB 2 type, the crystal structure of BaLiBi can be also viewed as a “stuffed” variant of the NiAs structure, where the Bi atoms form a hexagonal close packing, the Ba atoms occupy the octahedral voids in this packing, and the Li atoms are located between adjacent tetrahedral voids on their common triangular faces. Furthermore, in the absence of direct Bi–Bi interactions, the BaLiBi crystal structure rationalized according to the notation (Ba 2+ )(Li + )(Bi 3− ), suggesting an electron-balanced composition, i. e., a Zintl phase. In line with this notation, scalar-relativistic first-principle calculations with the LMTO code reveal a semiconducting ground state, with a bandgap of about 0.6 eV. Fully relativistic electronic structure calculations predict a semimetallic ground state.
37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
Discussion: Presentation of Atmospheric 14 C O2 data
ABSTRACT Observations of radiocarbon ( 14 C) in Earth’s atmosphere and other carbon reservoirs are important to quantify exchanges of CO 2 between reservoirs. The amount of 14 C is commonly reported in the so-called Delta notation, i.e., Δ 14 C, the decay- and fractionation-corrected departure of the ratio of 14 C to total C from that ratio in an absolute international standard; this Delta notation permits direct comparison of 14 C/C ratios in the several reservoirs. However, as Δ 14 C of atmospheric CO 2 , Δ 14 CO 2 is based on the ratio of 14 CO 2 to total atmospheric CO 2 , its value can and does change not just because of change in the amount of atmospheric 14 CO 2 but also because of change in the amount of total atmospheric CO 2 , complicating ascription of change in Δ 14 CO 2 to change in one or the other quantity. Here we suggest that presentation of atmospheric 14 CO 2 amount as mole fraction relative to dry air (moles of 14 CO 2 per moles of dry air in Earth’s atmosphere), or as moles or molecules of 14 CO 2 in Earth’s atmosphere, all readily calculated from Δ 14 CO 2 and the amount of atmospheric CO 2 (with slight dependence on δ 13 CO 2 ), complements presentation only as Δ 14 CO 2 , and can provide valuable insight into the evolving budget and distribution of atmospheric 14 CO 2 .
Geochemistry & Geophysics↗
A decay database of coincident γ–γ and γ–X -ray branching ratios for in-field spectroscopy applications
Current fieldable spectroscopy techniques often use single detector systems heavily impacted by interferences from intense background radiation fields. These effects result in low-confidence measurements that can lead to misinterpretation of the collected spectrum. To help improve interpretation of the fission products and short-lived radionuclides produced in a composite sample, a coincidence-database is being developed in support of a robust portable and X-ray coincidence detector system concurrently under development at the Pacific Northwest National Laboratory for in-field deployment. Hitherto, no database exists containing coincident γ–γ and γ–X-ray branching-ratio intensities on an absolute scale that will greatly enhance isotopic identification for in-field applications. As part of this project, software has been developed to parse all radioactive-decay data sets from the Evaluated Nuclear Structure Data File (ENSDF) archive to enable translation into a more useful JavaScript Object Notation (JSON) formats that more readily supports query-based data manipulation. The coincident database described in this work is the first of its kind and contains coincidence γ–γ and γ–X-ray intensities and their corresponding uncertainties, together with auxiliary metadata associated with each decay data set. The new JSON format provides a convenient and portable means of data storage that can be imported into analysis frameworks with relatively low overhead allowing for meaningful comparison with measured data.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Perturbative model of noisy quantum signal processing
Recent progress in quantum signal processing (QSP) and its generalization, quantum singular value transformation, has led to a grand unification of quantum algorithms. However, inherent experimental noise in quantum devices severely limits the length of realizable QSP sequences. Here, we consider a model of QSP with generic perturbative noise in the signal processing basis and present a diagrammatic notation useful for analyzing such errors. To demonstrate our technique, we study a specific coherent error, that of under- or overrotation of the signal processing operator parametrized by ε<<1. For this coherent error model, it is shown that while Pauli Z errors are not recoverable without additional resources, Pauli X and Y errors can be arbitrarily suppressed by coherently appending a noisy recovery QSP without the use of additional resources or ancillas. Furthermore, through a careful accounting of errors using our diagrammatic tools, we provide an upper and lower bound on the length of this recovery QSP operator. We anticipate that the perturbative technique and the diagrammatic notation proposed here will facilitate future study of generic noise in QSP and quantum algorithms.
71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
Developing a Prototype Methodology to Rank CO2-EOR Wells and Assess Their Reuse Potential for Geologic Carbon Storage
This paper presents a prototype methodology to assess the possible transition of Class II carbon dioxide-enhanced oil recovery (CO2-EOR) wells to Class VI wells. The focus is on wellbore construction materials—casing, cement, tubing, and the packer—and includes comprehensive workflows to evaluate these materials, with primary emphasis on compliance with Environmental Protection Agency (EPA) Class VI well construction and conversion guidelines. These workflows systematically assess material properties and performance criteria to ensure regulatory compliance and optimize long-term wellbore integrity and functionality. Utilizing Python scripts and JavaScript Object Notation (JSON) representations, the study automates checks on digitized Texas Railroad Commission (TRRC) data to rank wells based on workflow criteria. By emphasizing critical factors such as casing integrity, cementing techniques, tubing compatibility, and packer selection, the methodology helps well owners and operators prioritize wells for potential reuse as CO2 injection wells. Given limitations in digitized data, manual user verification is required in some sections. Future improvements include integrating non-digitized data through web scraping and machine learning techniques. This research serves as a practical guide for stakeholders, supporting environmental compliance and sustainable well operations.
geologic carbon sequestration↗
Using Likwid and Byfl to Benchmark Hardware Performance
This paper outlines a benchmarking study conducted during my internship at LANL, focusing on CPU (Computer Processing Unit) and program performance assessment. The primary goal was to gather memory access data using three methods across five polybench kernels The data gathered would then be used to compare and contrast to one another and calculate operational intensity for performance comparisons. Benchmarking tools like Byfl and Likwid were employed, with Byfl offering hardware-independent data through LLVM compiler communication and Likwid directly interacting with computer hardware. The study considered various benchmarking factors, including optimization levels, Big O notation ((n)), CPU diversity and specific kernel equations. Big O notation was utilized to simplify code complexity, with detailed breakdwons of operations and memory components for each polybench application. Specific O(n) equations enabled nuanced kernel compariosns, facilitating the identification of performance variations. CPU efficiency assessments were conducted using Likwid tests on two CPUs. The central focus on code optimization aimed at achieving higher speeds and reduced memory usage through streamlined code. Future work propsoes creating a roofline model, synthesizing benchmarking data into a comprehensive data graph to assist in optimizing code and improving hardware performance. The potential impact on the laboratory or national mission was underscored, emphasizing the importance of optimizing applications and hardware to conserve resources and accelerate program execution. The specific relevance to LANL’s operations in math-intensive fields such as Nuclear Fission, Space Exploration, and Nanotechnology highlights the necessity of efficient benchmarking for resource conservation and proram speed. Overall, this study contributes to the understanding of CPU and program performance, providing insights for future optimization efforts in a laboratory setting
97 MATHEMATICS AND COMPUTING↗
Improving Mathematical Exposition of an Industrial-Scale Linear Program
Industrial-scale models require considerable setup time; hence, once built, they are used in myriad ways to consider closely related cases. In practice, the code for these models frequently evolves without appropriate notational choices, largely as a result of the lengthy development time of, and the number of individuals contributing to, their formulation. This leads to inefficiencies and obfuscates model structures that might be leveraged to expedite solutions. In this paper, we advocate for an emerging literature on model formulation “best practices” and present the reformulation of a widely used industrial-scale linear program. The efficient mathematical expression of this linear program, used to plan capacity expansion in the energy sector, allows for greater transparency of model structures and enhanced ability to identify computational performance improvements, as well as a lucid interpretation of its solutions. This type of formulation is employed in several mathematical programming courses at our university as an example of the advantages of best practices; the model more broadly is used widely to inform policy in the U.S. energy sector.
97 MATHEMATICS AND COMPUTING↗
Safety Assurance Framework for Nuclear Digital Instrumentation and Control Software
Software in digital instrumentation and control (D&C) systems poses unique challenges for the safety assurance of nuclear power plants. Through a literature survey of 21 sources, we analyzed various claims, arguments, and evidence used in safety assurance cases across industries. These were organized into a Goal Structuring Notation (GSN) safety assurance case framework to organize and visualize the various arguments for DI&C safety. We developed a classification for the levels of the framework, which can be used in other safety assurance cases to improve clarity.
46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗
Safety Assurance of Software and Machine Learning Development for Nuclear Instrumentation and Controls
Digital instrumentation and control (DI&C) systems monitor and control parameters in nuclear power plants. Ensuring their safety is a critical part of ensuring overall plant safety. Nuclear power plant licensing generates thousands of safety documents that could be organized more effectively using a safety assurance case (SAC). We conducted a literature survey of SACs and created a SAC framework for DI&C software using Goal Structuring Notation (GSN). This framework focuses on four software development processes: management & assurance, pre-developed software (PDS) qualification, the Software Development Life Cycle (SDLC), and the Machine Learning Development Life Cycle (MLDLC). We organized our framework using a novel level structure that can be applied to other SACs to improve their clarity. Finally, we demonstrate how our framework can be incorporated as part of a SAC for a larger reactor system.
46 - INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AN↗
OpenACC Unified Programming Environment for Multi-hybrid Acceleration with GPU and FPGA
Accelerated computing in HPC such as with GPU, plays a central role in HPC nowadays. However, in some complicated applications with partially different performance behavior is hard to solve with a single type of accelerator where GPU is not the perfect solution in these cases. We are developing a framework and transpiler allowing the users to program the codes with a single notation of OpenACC to be compiled for multi-hybrid accelerators, named MHOAT (Multi-Hybrid OpenACC Translator) for HPC applications. MHOAT parses the original code with directives to identify the target accelerating devices, currently supporting NVIDIA GPU and Intel FPGA, dispatching these specific partial codes to background compilers such as NVIDIA HPC SDK for GPU and OpenARC research compiler for FPGA, then assembles binaries for the final object with FPGA bitstream file. In this paper, we present the concept, design, implementation, and performance evaluation of a practical astrophysics simulation code where we successfully enhanced the performance up to 10 times faster than the GPU-only solution.
Boku, Taisuke↗
Light Scalars at FASER
FASER, the ForwArd Search ExpeRiment, is a currently operating experiment at the Large Hadron Collider (LHC) that can detect light long-lived particles produced in the forward region of the LHC interacting point. In this paper, we study the prospect of detecting light CP-even and CP-odd scalars at FASER and FASER 2. Considering a model-independent framework describing the most general interactions between a CP-even or CP-odd scalar and SM particles using the notation of coupling modifiers in the effective Lagrangian, we develop the general formalism for the scalar production and decay. We then analyze the FASER and FASER 2 reaches of light scalars in the large tan β region of the Type-I two Higgs double model as a case study, in which light scalars with relatively long lifetime could be accommodated. In the two benchmark scenarios we considered, the light (pseudo)scalar decay length varies in (10 –8 , 10 5 ) meters. Both FASER and FASER 2 can probe a large part of the parameter space in the large tan β region up to 10 7 , extending beyond the constraints of the other existing experiments.
72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
Cluster dynamics simulations of tritium and helium diffusion in lithium ceramics
Tritium (T) and He diffusion in LiAlO 2 and LiAl 5 O 8 phases influences the performance of tritium producing burnable absorber rods (TPBARs) by affecting the gas release, swelling and thermal conductivity of Li-bearing ceramic pellets. Frenkel pair defects and clusters created by irradiation can attract T and He interstitials and form clusters of the type He i x Li, He i x Al, He i x O, T i x Li, T i x Al, and T i x O, 1 ≤ x ≤ 4 in a Li, Al or O vacancy site (notation denotes x He or T atoms in a 1 Li, 1 Al or 1 O vacant site). The concentration and mobility of each of these clusters collectively contribute to the diffusion of the He and T gases in LiAlO 2 and LiAl 5 O 8 . Here, in this work, free energy cluster dynamics simulations implemented in the Centipede code, are used to obtain the concentration and diffusivities of these clusters which are then used to calculate the total diffusivity of T and He gases in LiAlO 2 and LiAl 5 O 8 . The results show that diffusivity of T is at least one order of magnitude higher in LiAlO 2 as compared to that in LiAl 5 O 8 whereas He diffusion is 2–13 orders of magnitude higher in LiAlO 2 as compared to that in LiAl 5 O 8 . There is a higher concentration of highly diffusive species (T interstitials and T i 03 Li for the case of tritium and He i 01 Li, He i 02 Li, and He i 03 Li for the case of He) in LiAlO 2 than in LiAl 5 O 8 which increase the total diffusion of T and He in LiAlO 2 .
36 MATERIALS SCIENCE↗
pyEGAF: An open-source Python library for the Evaluated Gamma-ray Activation File
The Evaluated Gamma-ray Activation File (EGAF) is one of the most comprehensive resources for thermal neutron-capture data. This database contains data from prompt gamma activation analysis measurements carried out in a consistent manner using the same experimental configuration at the Budapest Research Reactor for 245 isotopes. Although these valuable datasets have been freely available for many years, one of the drawbacks is the outdated and cryptic Evaluated Nuclear Structure Data File (ENSDF) format that is currently adopted for dissemination, making it difficult for users unfamiliar with the format to access and utilize the data contained therein. Furthermore, the ENSDF format does not readily lend itself to modern computational technologies and a parser is required to interpret the complicated mixed-record format. To help overcome these challenges, we have developed a translator to convert the ENSDF-formatted datasets into an open standard JavaScript Object Notation (JSON) format enabling accessibility to applications using different programming languages running in different environments. To compliment this effort, we have also developed an open-source software package implemented in Python, pyEGAF, that is designed to interact with the JSON data structures for general purpose access, manipulation, and analysis of the neutron-capture $\gamma$-ray data in EGAF. The new format, together with the pyEGAF library, greatly enhances access to the wider applications community where EGAF data may be useful or is required.
73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
Nanodomain Formation and Temperature-Dependent Diffusion in Deep Eutectic Solvents Revealed by Single-Molecule Tracking
Deep eutectic solvents (DESs) are typically regarded as homogeneous liquids; however, recent work shows that many exhibit nanoscale structural heterogeneity. Most studies attribute these nanoscale features to short-range chemical interactions. It is still unclear whether a long-range physical mechanism also plays a role. Here, in this study, we examined the nanoscale structure in two hydrophobic DESs, 1:3 tetrabutylammonium bromide: l-menthol (DES-butyl) and 1:3 tetraoctylammonium bromide: l-menthol (DES-octyl). The notation 1:3 represents the molar ratio of the hydrogen bond acceptors to hydrogen bond donors used in the synthesis of the DESs. Single-molecule tracking (SMT) coupled with maximum entropy method (MEM) analysis was used to measure the number of diffusion populations of a dilute concentration of an added fluorescent probe. The presence of more than one population of diffusion coefficients indicates the existence of multiple local environments for the fluorescent probe (i.e., nanoscale structures in the DES). DES-butyl showed a relatively narrow diffusion coefficient distribution centered at 0.55 μm 2 /s, whereas DES-octyl displayed two distinct diffusing populations at 20 °C, with diffusion coefficients of 0.12 μm 2 /s and 0.53 μm 2 /s for the slow and fast populations, respectively. As DES-octyl was heated, the slow-diffusing population steadily diminished and disappeared above ∼30 °C, indicating that the nanodomains present at lower temperatures collapse as the liquid becomes more thermodynamically mixed. This temperature-dependent homogenization is consistent with a physical mechanism of nanostructure formation, for example, liquid–liquid phase separation (LLPS), wherein the structure is not driven solely by specific chemical interactions. The SMT-MEM results suggest that a long-range physical mechanism is the most plausible origin of the measured nanoscale structure in DES-octyl.
Opare-Addo, Jemima [Ames Laboratory (AMES), Ames, ↗
Influence of Surface Defects on WO 3 Photoelectrodes for Catalyzing Chloride Oxidation in Water
Tungsten oxide (WO 3 ) is an n-type semiconductor due to oxygen vacancies (□ O •• in Kroger-Vink notation) or surface protonation as H x WO 3 . It is one of the few acid-stable oxides under large positive bias, which makes WO 3 ideal for interrogating the mechanism of the chloride oxidation reaction (COR). The large, positive valence band edge of ∼3 eV provides the overpotential necessary to carry out the COR, but the reaction competes with the oxygen-evolution reaction in water. The □ O •• defect density can be controlled by the atmosphere under which the material is annealed, so WO 3 films were prepared by a spin-coating method from an ammonium metatungstate precursor annealed at 500 °C under air, flowing O 2 , and flowing argon. Annealing the films in a flowing O 2 atmosphere hinders the formation of □ O ••, and annealing in Ar leads to greater surface W 6+ , likely due to expelling intercalated H + . The saturated photocurrent density (j ph ) is highest in films with the greatest concentration of W 5+ and greatest concentration of oxide defects: (0.66 mA/cm 2 annealed in air, 0.58 mA/cm 2 annealed in Ar, and 0.49 mA/cm 2 annealed in O 2 , reported at 1.5 V vs Ag/AgCl, pH 3 (before the onset of a dark reaction). The defect concentrations are determined by X-ray photoelectron spectroscopy. In all cases the Faradaic efficiency for the COR is near unity. Finally, we demonstrate that W 5d states can be probed by ligand K-edge X-ray absorption near-edge spectroscopy via pre-edge (Cl 1s → W 5d) transitions, lower in energy than the ligand-centered (Cl 1s → 4p) transition. We use this analysis to show the presence of W─Cl covalent bonds on the WO 3 films post-COR, corroborated by DFT calculations. Furthermore, this result stands in contrast to the commonly assumed mechanistic proposal invoking outer-sphere electron transfer to a physisorbed chloride ion.
Cl K-edge↗