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Bioenergy landscapes drive trophic shifts in generalist ants
Changes in trophic niche—the pathways through which an organism obtains energy and nutrients—are a fundamental way in which organisms respond to environmental conditions. But the capacity for species to alter their trophic niches in response to global change, and the ways they do so when able, remain largely unknown. Here we examine food webs in three long–term and large–scale experiments to test how resource availability and nutritional requirements interact to determine an organism's trophic niche in the context of one of the largest global trends in land use—the rise in bioenergy production. Here, we use carbon and nitrogen stable isotope analyses to characterize arthropod food webs across three biofuel crops representing a gradient in plant resource richness (corn monocultures, fields dominated by native switchgrass and restored prairie), and to quantify changes in the trophic niche of a widespread generalist ant species across habitats. In doing so, we measure the effects of basal resource richness on food chain length, niche breadth and trophic position. We frame our results in the context of two hypotheses that explain variation in trophic niche—the niche variation hypothesis which emphasizes the importance of resource diversity and ecological opportunity, and the optimal diet hypothesis which emphasizes dietary constraints and the availability of optimal resources. Increasing plant richness lengthened food chains by 10%–20% compared to monocultures. Niche breadths of generalist ants did not vary with resource richness, suggesting they were limited by optimal diet requirements and constraints rather than by ecological opportunity. The ants instead responded to changes in plant richness by shifting their estimated trophic position. In resource–poor monocultures, the ants were top predators, sharing a trophic position with predatory spiders. In resource–rich environments, in contrast, the ants were omnivores, relying on a mix of animal prey and plant–based resources. In addition to highlighting novel ecosystem impacts of alternate bioenergy landscapes, our results suggest that niche breadth and trophic diversification depend more on the presence of optimal resources than on ecological opportunity alone.
Characterization of Mechanical Performance of Composites Fabricated Using Innovative Carbon Fiber Wet Laid Process
Recent innovation in production of optimized nonwoven wet laid (WL) carbon fiber (CF) mats raised the question of optimal translation of the performance and isotropy into composites formed through these dry preforms. This work explores the mechanical behavior of composites produced from WL-CF mats in conjunction with the microstructure predicted through Object Oriented Finite Element Analysis (OOF). The mats used for the composites were prepared in two dispersion regimes using 25.4 mm long CF. The mixing regimes discussed in the author’s previous work, are identified as Method 1 for the traditional processing regime and Method 2 for the innovative regime that provided optimal nonwoven WL-CF mats. Composite panels from Method 2 mats showed a normalized tensile strength increase of 52% over those from Method 1 panels. Reproducibility analysis of composites made from Method 2 mats demonstrated a standard deviation of 2% in fiber weight content, 2% in tensile modulus and 9% in tensile strength, while composites made from Method 1 mats demonstrated a standard deviation of 5% in fiber weight content, 5% in tensile modulus and 17% in tensile strength. Systematic study of the microstructure and its analysis through OOF confirmed the isotropy translation of mats produced through method 2 to the composites. This study validated the hypothesis that optimal nonwoven mats lead to a well-balanced composite with optimal performance and that non-optimal nonwoven mats do not pack into a well-balanced composite.
SCExAO/CHARIS Near-infrared Integral Field Spectroscopy of the HD 15115 Debris Disk
We present new, near-infrared (1.1–2.4 μm) high-contrast imaging of the debris disk around HD 15115 with the Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) system coupled with the Coronagraphic High Angular Resolution Imaging Spectrograph (CHARIS). The SCExAO/CHARIS resolves the disk down to ρ ∼ 0.″2 (r {sub proj} ∼ 10 au), a factor of ∼3–5 smaller than previous recent studies. We derive a disk position angle of PA ∼ 279.°4–280.°5 and an inclination of i ∼ 85.°3–86.2.°. While recent SPHERE/IRDIS imagery of the system could suggest a significantly misaligned two-ring disk geometry, CHARIS imagery does not reveal conclusive evidence for this hypothesis. Moreover, optimizing models of both one- and two-ring geometries using differential evolution, we find that a single ring having a Hong-like scattering phase function matches the data equally well within the CHARIS field of view (ρ ≲ 1″). The disk’s asymmetry, well evidenced at larger separations, is also recovered; the west side of the disk appears, on average, around 0.4 mag brighter across the CHARIS bandpass between 0.″25 and 1″. Comparing Space Telescope Imaging Spectrograph (STIS) 50CCD optical photometry (2000–10500 Å) with CHARIS near-infrared photometry, we find a red (STIS/50CCD−CHARIS broadband) color for both sides of the disk throughout the 0.″4–1″ region of overlap, in contrast to the blue color reported at similar wavelengths for regions exterior to ∼2″. Further, this color may suggest a smaller minimum grain size than previously estimated at larger separations. Finally, we provide constraints on planetary companions and discuss possible mechanisms for the observed inner disk flux asymmetry and color.
Non-commutative disintegrations: Existence and uniqueness in finite dimensions
Motivated by advances in categorical probability, we introduce non-commutative almost everywhere (a.e.) equivalence and disintegrations in the setting of C*-algebras. We show that C*-algebras (resp. W*-algebras) and a.e. equivalence classes of 2-positive (resp. positive) unital maps form a category. We prove non-commutative disintegrations are a.e. unique whenever they exist. We provide an explicit characterization for when disintegrations exist in the setting of finite-dimensional C*-algebras, and we give formulas for the associated disintegrations.
SCExAO/CHARIS Near-infrared Integral Field Spectroscopy of the HD 15115 Debris Disk
We present new, near-infrared (1.1–2.4 μm) high-contrast imaging of the debris disk around HD 15115 with the Subaru Coronagraphic Extreme Adaptive Optics (SCExAO) system coupled with the Coronagraphic High Angular Resolution Imaging Spectrograph (CHARIS). The SCExAO/CHARIS resolves the disk down to ρ ∼ 0."2 (r(proj) ∼ 10 au), a factor of ∼3–5 smaller than previous recent studies. We derive a disk position angle of PA ∼ 279.°4–280.°5 and an inclination of i ∼ 85.°3–86.2.°. While recent SPHERE/IRDIS imagery of the system could suggest a significantly misaligned two-ring disk geometry, CHARIS imagery does not reveal conclusive evidence for this hypothesis. Moreover, optimizing models of both one- and two-ring geometries using differential evolution, we find that a single ring having a Hong-like scattering phase function matches the data equally well within the CHARIS field of view (ρ ≲ 1''). The disk's asymmetry, well evidenced at larger separations, is also recovered; the west side of the disk appears, on average, around 0.4 mag brighter across the CHARIS bandpass between 0farcs25 and 1''. Comparing Space Telescope Imaging Spectrograph (STIS) 50CCD optical photometry (2000–10500 Å) with CHARIS near-infrared photometry, we find a red (STIS/50CCD−CHARIS broadband) color for both sides of the disk throughout the 0farcs4–1'' region of overlap, in contrast to the blue color reported at similar wavelengths for regions exterior to ∼2''. Further, this color may suggest a smaller minimum grain size than previously estimated at larger separations. Finally, we provide constraints on planetary companions and discuss possible mechanisms for the observed inner disk flux asymmetry and color.
GO Competition Challenge 1 Benchmark Approach and Validation Support
At the outset ARPA-e’s grid optimization competition sought to test a hypothesis that modern nonlinear optimization methods had reached a level of performance and reliability necessary to optimize energy grids using nonlinear power flow equations. The results demonstrated by this project and the other participants in the grid optimization competition have demonstrated beyond any shadow of doubt that this hypothesis is true. This result suggest that the mathematical optimization technology now exists to produce a revolution in power grid optimization software, which would improve the efficiency of energy grid operations to the broad benefit of society.
Discounting Water for Optimal Carbon Gain as a Basis of Stomatal Closure
The exchange of carbon dioxide and water vapor between terrestrial ecosystems and the atmosphere is regulated by stomata (small pores in the leaves of plants). Unsurprisingly, environmental factors controlling the opening and closure of stomata has been sought as early as 1800. One approach, popularized in the early 1970s, is a stomatal optimization framework. This framework is based on the hypothesis that plants optimize carbon gain subject to water loss or water availability constraints. This constraint optimization problem was solved in various forms assuming instantaneous adjustments of stomatal aperture to maximize a reward function with no future foresight or legacy effects. Holtzman et al. (2024, https://doi.org/10.1029/2023av001113) offers a novel approach that can diagnose the effective timescale over which the reward function maximization must be time-integrated. The developed method thus optimizes an integrated carbon gain function but adjusted by a discount factor subject to water availability in the root zone. The discount factor considers how the plant values carbon gain to save water and its timescale can be inferred from observations because the model is analytically tractable. The results suggest that the most important climate factor that determines this discount timescale is multi-annual mean of the longest dry period during the growing season. The findings highlight how local climate traits influence the spatial variation in ecosystem-level water use strategies. This sets the stage for expanding such a framework to cases where multiple constraints act in concert while operating at distinct time scales.
Tissue scale agent-based simulation of premalignant progressions in Barrett’s esophagus
Barrett’s esophagus (BE) is a benign condition of the distal esophagus that initiates a multistage pathway to esophageal adenocarcinoma (EAC). Short of frequent intrusive (and costly) surveillance, effective screening for neoplasia in BE populations is yet to be established since progressors are rare and virtually undetectable without routine biopsies, which often sample only a small portion of the BE tissue. As a result, reliable estimation of the true prevalence of dysplasia in a BE population and evidence-based optimization of screening for at-risk individuals is challenging. Data-driven microsimulations, i.e., model-generated instances of disease history in a predefined virtual population, have found utility in the EAC screening literature as low-overhead alternatives to real-world hypothesis testing of optimal interventions for dysplasia. Despite the successes, computational limitations, paucity of knowledge and data on Barrett’s dysplasia, and the complexities of disease progression as a multiscale multiphysics process have hindered the treatment of disease progression in BE as a spatial process. Agent-based modeling of nucleation and proliferation processes in dysplasia warrants exploration in this context as an approximation that operates at a trade-off between computational tractability and precise representation of the composition and physics of the substrate (tissue). In this study, we describe spatially resolved simulations of premalignant progression toward EAC in a coarse-grained model of Barrett’s tissue that resolves the metaplastic tissue at a length scale of 0.42 mm (~3300 crypts/mm 2 ). Finally, the model is calibrated to reproduce historical high-grade dysplasia prevalence when model-generated patients are screened using the Seattle protocol.
A test of ecological optimality for semiarid vegetation
Three ecological optimality hypotheses which have utility in parameter reduction and estimation in a climate-soil-vegetation water balance model are reviewed and tested. The first hypothesis involves short term optimization of vegetative canopy density through equilibrium soil moisture maximization. The second hypothesis involves vegetation type selection again through soil moisture maximization, and the third involves soil genesis through plant induced modification of soil hydraulic properties to values which result in a maximum rate of biomass productivity.
Optimization of the electron transport layer in quantum dot light-emitting devices
Quantum dot light-emitting devices have emerged as an important technology for display applications. Their emission is a result of recombination between positive and negative charge carriers that are transported through the hole and electron conductive layers, respectively. The selection of electron or hole transport materials in these devices not only demands the alignment of energy levels between the layers but also balances the flow of electrons and holes toward the recombination sites. In this work, we examine a method for device optimization through control of the charge carrier kinetics. We employ impedance spectroscopy to examine the mobility of charge carriers through each of the layers. The derived mobility values provide a path to estimate the transition time of each charge carrier toward the emitting layer. We suggest that an optimal device structure can be obtained when the transition times of both charge carriers toward the active layer are similar. Finally, we examine our hypothesis by focusing on thickness optimization of the electron transport layer.
Signatures of optimal codon usage in metabolic genes inform budding yeast ecology
Reverse ecology is the inference of ecological information from patterns of genomic variation. One rich, heretofore underutilized, source of ecologically relevant genomic information is codon optimality or adaptation. Bias toward codons that match the tRNA pool is robustly associated with high gene expression in diverse organisms, suggesting that codon optimization could be used in a reverse ecology framework to identify highly expressed, ecologically relevant genes. To test this hypothesis, we examined the relationship between optimal codon usage in the classic galactose metabolism ( GAL ) pathway and known ecological niches for 329 species of budding yeasts, a diverse subphylum of fungi. We find that optimal codon usage in the GAL pathway is positively correlated with quantitative growth on galactose, suggesting that GAL codon optimization reflects increased capacity to grow on galactose. Optimal codon usage in the GAL pathway is also positively correlated with human-associated ecological niches in yeasts of the CUG-Ser1 clade and with dairy-associated ecological niches in the family Saccharomycetaceae. For example, optimal codon usage of GAL genes is greater than 85% of all genes in the genome of the major human pathogen Candida albicans (CUG-Ser1 clade) and greater than 75% of genes in the genome of the dairy yeast Kluyveromyces lactis (family Saccharomycetaceae). We further find a correlation between optimization in the GAL actose pathway genes and several genes associated with nutrient sensing and metabolism. This work suggests that codon optimization harbors information about the metabolic ecology of microbial eukaryotes. This information may be particularly useful for studying fungal dark matter—species that have yet to be cultured in the lab or have only been identified by genomic material.
Ecological optimality in water-limited natural soil-vegetation systems. II - Tests and applications
The long-term optimal climatic climax soil-vegetation system is defined for several climates according to previous hypotheses in terms of two free parameters, effective porosity and plant water use coefficient. The free parameters are chosen by matching the predicted and observed average annual water yield. The resulting climax soil and vegetation properties are tested by comparison with independent observations of canopy density and average annual surface runoff. The climax properties are shown also to satisfy a previous hypothesis for short-term optimization of canopy density and water use coefficient. Using these hypotheses, a relationship between average evapotranspiration and optimum vegetation canopy density is derived and is compared with additional field observations. An algorithm is suggested by which the climax soil and vegetation properties can be calculated given only the climate parameters and the soil effective porosity. Sensitivity of the climax properties to the effective porosity is explored.
Finding a common ground for RCM experiments. Part B: Benchmark study on ethanol ignition
Rapid compression machines (RCMs) are widely used to investigate gas phase reaction kinetics of various kind of fuels at application relevant conditions. In principle, the operation of an RCM is based on the idea of compressing a homogenous pre-mixed fuel-air mixture by a piston. Usually creviced pistons ensure a homogenous adiabatic core in the center of the reaction chamber which permits the assumption of an isentropic relation between the measured pressure and gas temperature. Despite the ideal core gas compression, non-ideal effects such as heat loss, differences in the compression behavior, and ultimately non-standardized design and operation of rapid compression machines lead to different experimental results in different facilities at nominally the same end of compression conditions. In this study ignition delay times of ethanol are investigated at four different conditions in five independent RCMs. As expected, the raw results of the different facilities indeed show notable differences at the same end of compression conditions. However, according to the adiabatic core hypothesis the agreement between kinetic simulations and experiments should be consistent for all facilities provided that the facility effects are correctly accounted for. To elaborate upon this hypothesis, a kinetic mechanism is optimized to reflect the experimental results of all facilities. In the end, the optimized mechanism predicts all experimental data within the expected uncertainty. This confirms the reliability of RCM experiments for kinetic investigations and the validity of the effective volume approach in simulating RCM data.
The TOYSAT structural control experiment
The Lockheed TOYSAT experiment is described. The experiment was designed to test hypothesis concerning the application of optimal control theory to flexible spacecraft. The theory is presented, and results described.
Method and system for diagnostics of apparatus
Proposed is a method, implemented in software, for estimating fault state of an apparatus outfitted with sensors. At each execution period the method processes sensor data from the apparatus to obtain a set of parity parameters, which are further used for estimating fault state. The estimation method formulates a convex optimization problem for each fault hypothesis and employs a convex solver to compute fault parameter estimates and fault likelihoods for each fault hypothesis. The highest likelihoods and corresponding parameter estimates are transmitted to a display device or an automated decision and control system. The obtained accurate estimate of fault state can be used to improve safety, performance, or maintenance processes for the apparatus.
On the Integration of Loudness Over Time for the Prediction of Single-Event Annoyance
Loudness is the quality of human perception that is most related to acoustic intensity and energy, however there is no agreed-upon way of integrating loudness over time for the prediction of noise-induced annoyance. Most noise metrics used today for aircraft certification and regulation employ the “Equal-Energy Hypothesis” (EEH) and sum the acoustical energy of one or more noise events over time to create a single metric value that represents the entire exposure. Using the EEH creates a natural tradeoff between the peak energy and the duration of a single noise event, the “hypothesis” being that this tradeoff optimally predicts annoyance in a wide variety of situations. This work proposes a strategy for integrating a loudness-like time series which is flexible in two ways: First, it includes a parameter b ∈ [0,1]. When b = 0, the metric will return the peak of the time series. At b = .5, the metric will behave in accordance with the EEH. At b = 1, the metric will penalize the duration of the sound more than the EEH would. Second, transformations are given so that the strategy can be computed from, or generate quantities in units analogous to, decibels (or phon), physical units (acoustic pressure/power), or perceptually-scaled units (sone). This approach is demonstrated on a dataset of annoyance responses to single events of UAV and road vehicle noise that is fit with an augmented linear regression. Analyses based on this integration of A-weighted level and the output of the “Zwicker” loudness model yield similar results: that subjects may have been slightly more sensitive to the durations of the events than the EEH would suppose, but that the EEH cannot be disproven using these data. The time-integrated metrics outperform both time-averaged and centile-based metrics.
On the Integration of Loudness Over Time for the Prediction of Single-Event Annoyance
Loudness is the quality of human perception that is most related to acoustic intensity and energy, however there is no agreed-upon way of integrating loudness over time for the prediction of noise-induced annoyance. Most noise metrics used today for aircraft certification and regulation employ the “Equal-Energy Hypothesis” (EEH) and sum the acoustical energy of one or more noise events over time to create a single metric value that represents the entire exposure. Using the EEH creates a natural tradeoff between the peak energy and the duration of a single noise event, the “hypothesis” being that this tradeoff optimally predicts annoyance in a wide variety of situations. This work proposes a strategy for integrating a loudness-like time series which is flexible in two ways: First, it includes a parameter b ∈ [0,1]. When b = 0, the metric will return the peak of the time series. At b = .5, the metric will behave in accordance with the EEH. At b = 1, the metric will penalize the duration of the sound more than the EEH would. Second, transformations are given so that the strategy can be computed from, or generate quantities in units analogous to, decibels (or phon), physical units (acoustic pressure/power), or perceptually-scaled units (sone). This approach is demonstrated on a dataset of annoyance responses to single events of UAV and road vehicle noise that is fit with an augmented linear regression. Analyses based on this integration of A-weighted level and the output of the “Zwicker” loudness model yield similar results: that subjects may have been slightly more sensitive to the durations of the events than the EEH would suppose, but that the EEH cannot be disproven using these data. The time-integrated metrics outperform both time-averaged and centile-based metrics.