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At least 19 records
All sourcesNASA NTRSDOE OSTI
NASA NTRS1986

Base pairing and base mis-pairing in nucleic acids

In recent years we have learned that DNA is conformationally active. It can exist in a number of different stable conformations including both right-handed and left-handed forms. Using single crystal X-ray diffraction analysis we are able to discover not only additional conformations of the nucleic acids but also different types of hydrogen bonded base-base interactions. Although Watson-Crick base pairings are the predominant type of interaction in double helical DNA, they are not the only types. Recently, we have been able to examine mismatching of guanine-thymine base pairs in left-handed Z-DNA at atomic resolution (1A). A minimum amount of distortion of the sugar phosphate backbone is found in the G x T pairing in which the bases are held together by two hydrogen bonds in the wobble pairing interaction. Because of the high resolution of the analysis we can visualize water molecules which fill in to accommodate the other hydrogen bonding positions in the bases which are not used in the base-base interactions. Studies on other DNA oligomers have revealed that other types of non-Watson-Crick hydrogen bonding interactions can occur. In the structure of a DNA octamer with the sequence d(GCGTACGC) complexed to an antibiotic triostin A, it was found that the two central AT base pairs are held together by Hoogsteen rather than Watson-Crick base pairs. Similarly, the G x C base pairs at the ends are also Hoogsteen rather than Watson-Crick pairing. Hoogsteen base pairs make a modified helix which is distinct from the Watson-Crick double helix.

Wang, A. H. J.↗
NASA NTRS1994

A constraint on the pair-density ratio (Z+) in an electron-positron pair wind

We derive a constraint on the pair density ratio, z(sub +) = n(sub +)/n(sub p), in an electron-positron pair wind flowing away from the central region of an accretion disk around a compact object under the assumption of a coupling between electrons, positrons, and protons. The minimum rate at which positrons are injected into the annihilation volume is given by the observed annihilation flux per unit volume. This rate is then used to determine a minimum mass loss rate per unit area, M(dot)(sub *) for a given pair density ratio at the base of the streamline. The requirement that M(dot)(sub *) less than M(dot)(sub *)(sub Edd) (the mean Eddington mass loss rate per unit area) then places a lower limit on the pair density ratio, z(sub +,)(sub min). A positron annihilation line was observed in Nova Muscae 1991 by GRANAT/SIGMA. The narrow width and redshift of the line suggest that the pair production and annihilation regions are physically distinct. We hypothesize that an electron-positron pair wind transports the pairs from the production to the annihilation region and calculate z(sub +),(sub min). We then determine constraints on the physical parameters on the pair production region by comparing z(sub +),(sub min) with previous studies of two-temperature and one-temperature accretion disks with electron-positron pairs.

Moscoso, M. D.↗
NASA NTRS1990

Tidal distortions in pairs of early-type galaxies

The authors are conducting an imaging survey of pairs of elliptical galaxies which has already produced interesting results. Some pairs present a common pattern of distortion interpreted in terms of tidal effects (Davoust and Prugniel, 1988; Prugniel et al., 1989). Other examples drawn from the literature (Borne and Hoessel, 1988; Colina and Perez-Fournon, 1990) share the same morphology. New cases and lists of the characteristics of 24 such systems. The authors' pairs are drawn from a sample of binary and multiple galaxies which has in turn been extracted from the CGCG, UGC (Nilson, 1973) and VV (Vorontsov-Velyaminov, 1959) catalogues. This sample includes that of Karachentsev (1972). It contains 1800 pairs, among which 700 are S - S or mixed morphology pairs. The authors are working on the remainder to produce a sample of close physical pairs of elliptical galaxies (they also include bulge dominated SO's since the morphological discrimination from ellipticals is often ambiguous, in particular for interacting galaxies). One of the interests of this work is to provide a sample selected on purely optical criteria, at variance with other works (e.g., Valentijn and Casertano, 1988). This will allow statistical studies of non-optical properties of these pairs (in particular radio emission). The authors have so far obtained charge-coupled device (CCD) images of 125 pairs with a 2m telescope and velocities' differences of 78 pairs were obtained using the 1.93 meter telescope of Observatoire de Haute Provence and from the literature. One is an optical pair (VV 190). Eighteen of our pairs present the morphological effect described in Davoust and Prugniel (1988): the external parts of each member are stretched in opposite senses in a direction rougly perpendicular to the pair axis. The proportion of 15 plus or minus 4 percent distorted pairs confirms previous estimates. Except for a few cases involving flattened galaxies with nearly aligned major axes which deserve careful detailed analysis (Prugniel, 1989), the apparent distortions do correspond to physical distortions. We have searched the literature for isophote maps showing this effect. In the survey of radio galaxies by Colina and Perez-Fournon (1990), 7 out of 20 pairs show this characteristic distortion.

Prugniel, Philippe↗
NASA NTRS2002

Pulsar Polar Cap Heating and Surface Thermal X-ray Emission: Inverse Compton Radiation Pair Fronts - 2

We investigate the production of electron-positron pairs by inverse Compton scattered (ICS) photons above a pulsar polar cap (PC) and calculate surface heating by returning positrons. This paper is a continuation of our self-consistent treatment of acceleration, pair dynamics, and electric field screening above pulsar PCs. We calculate the altitude of the inverse Compton pair-formation fronts, the flux of returning positrons, and present the heating efficiencies and X-ray luminosities. We revise pulsar death lines implying cessation of pair formation, and present them in surface magnetic field-period space. We find that virtually all known radio pulsars are capable of producing pairs by resonant and nonresonant ICS photons radiated by particles accelerated above the PC in a pure star-centered dipole field, so that our ICS pair death line coincides with empirical radio pulsar death. Our calculations show that ICS pairs are able to screen the accelerating electric field only for high PC surface temperatures and magnetic fields. We argue that such screening at ICS pair fronts occurs locally, slowing but not turning off acceleration of particles until screening can occur at a curvature radiation (CR) pair front at higher altitude. In the case where no screening occurs above the PC surface, we anticipate that the pulsar gamma-ray luminosity will be a substantial fraction of its spin-down luminosity. The X-ray luminosity resulting from PC heating by ICS pair fronts is significantly lower than the PC heating luminosity from CR pair fronts, which dominates for most pulsars. PC heating from ICS pair fronts is highest in millisecond pulsars, which cannot produce CR pairs, and may account for observed thermal X-ray components in the spectra of these old pulsars.

Harding, Alice K.↗
NASA NTRS2012

Pulsar Pair Cascades in Magnetic Fields with Offset Polar Caps

Neutron star magnetic fields may have polar caps (PC) that are offset from the dipole axis, through field-line sweepback near the light cylinder or non-symmetric currents within the star. The effects of such offsets on electron-positron pair cascades are investigated, using simple models of dipole magnetic fields with small distortions that shift the PCs by different amounts or directions. Using a Monte Carlo pair cascade simulation, we explore the changes in the pair spectrum, multiplicity and energy flux across the PC, as well as the trends in pair flux and pair energy flux with spin-down luminosity, L(sub sd). We also give an estimate of the distribution of heating flux from returning positrons on the PC for different offsets. We find that even modest offsets can produce significant increases in pair multiplicity, especially for pulsars that are near or beyond the pair death lines for centered PCs, primarily because of higher accelerating fields. Pair spectra cover several decades in energy, with the spectral range of millisecond pulsars (MSPs) two orders of magnitude higher than for normal pulsars, and PC offsets allow significant extension of all spectra to lower pair energies. We find that the total PC pair luminosity L(sub pair) is proportional to L(sub sd), with L(sub pair) approximates 10(exp -3) L(sub sd) for normal pulsars and L(sub pair) approximates 10(exp -2) L(sub sd) for MSPs. Remarkably, the total PC heating luminosity for even large offsets increases by less than a factor of two, even though the PC area increases by much larger factors, because most of the heating occurs near the magnetic axis.

Harding, Alice K.↗
NASA NTRS2002

Regimes of Pulsar Pair Formation and Particle Energetics

We investigate the conditions required for the production of electron-positron pairs above a pulsar polar cap (PC) and the influence of pair production on the energetics of the primary particle acceleration. Assuming space-charge limited flow acceleration including the inertial frame-dragging effect, we allow both one-photon and two-photon pair production by either curvature radiation (CR) photons or photons resulting from inverse-Compton scattering of thermal photons from the PC by primary electrons. We find that,, while only the younger pulsars can produce pairs through CR, nearly all known radio pulsars are capable of producing pairs through non-resonant inverse-Compton scatterings. The effect of the neutron star equations of state on the pair death lines is explored. We show that pair production is facilitated in more compact stars and more a massive stars. Therefore accretion of mass by pulsars in binary systems may allow pair production in most of the millisecond purser population. We also find that two-photon pair production may be important in millisecond pursers if their surface temperatures are above approx. or equal to three million degrees K. Pursers that produce pairs through CRT wilt have their primary acceleration limited by the effect of screening of the electric field. In this regime, the high-energy luminosity should follow a L(sub HE) proportional to dot-E(sup 1/2, sub rot) dependence. The acceleration voltage drop in pursers that produce pairs only through inverse-Compton emission will not be limited by electric field screening. In this regime, the high-energy luminosity should follow a L(sub HE) proportional to dot-E(sub rot) dependence. Thus, older pursers will have significantly lower gamma-ray luminosity.

Harding, Alice K.↗
NASA NTRS1990

An atlas of mixed-morphology pairs

Current theories of galaxy formation imply that environment is the most important factor in deciding whether a collapsing region becomes a spiral galaxy or an elliptical galaxy. If this is the case, then isolated pairs comprising a galaxy of each morphology provide an especially interesting test, since, strictly speaking, they should not exist. The first phase of studying E-S pairs is to define a sample which is genuinely isolated and genuinely E-S. The catalog compiled by Karachentsev is the most useful Northern Hemisphere starting point, containing 603 pairs which obeyed certain well-defined angular isolation criteria. All of these pairs now have velocities, enabling further removal of at least some of the non-physical binaries. The conventional cutoff at 500 km s(exp -1) was used for this purpose. However, the morphological types were estimated from Palomar Sky Survey prints, and are consequently not very accurate. It was therefore decided to obtain good charge coupled device (CCD) images in the B-band of all pairs from the Karachentsev sample which were classified as either E-S (73 pairs) or E-SO (91 pairs), for a total of 164 pairs. This includes the 24 pairs with known redshift differences greater than 500 km s(exp -1) (9 E-S and 15 E-SO), which were also imaged in this survey, not only for completeness but also in case the criteria were later changed, or the redshifts were found to be in error. A total of 198 CCD frames were obtained between February 1986 and the present, with most of the observations being completed by the summer of 1987. A number of missing stragglers and replacements for poor quality images were taken more recently. Most observations used the number 1-0.9m telescope at Kitt Peak, with a few frames from the 2.1m. Some pairs required more than one image due to their separation. The morphological study did not require photometric conditions, but calibrations were made for almost all images anyway, and the weather was probably photometric at least half of the time, at least to an accuracy of around 0.1 magnitudes. The results of this first phase will be published in the form of an Atlas, from which any interested readers will be able to select their own sub-sample using their preferred morphological criteria.

Sharp, N. A.↗
NASA NTRS2011

Design Considerations for a Dedicated Gravity Recovery Satellite Mission Consisting of Two Pairs of Satellites

Future satellite missions dedicated to measuring time-variable gravity will need to address the concern of temporal aliasing errors; i.e., errors due to high-frequency mass variations. These errors have been shown to be a limiting error source for future missions with improved sensors. One method of reducing them is to fly multiple satellite pairs, thus increasing the sampling frequency of the mission. While one could imagine a system architecture consisting of dozens of satellite pairs, this paper explores the more economically feasible option of optimizing the orbits of two pairs of satellites. While the search space for this problem is infinite by nature, steps have been made to reduce it via proper assumptions regarding some parameters and a large number of numerical simulations exploring appropriate ranges for other parameters. A search space originally consisting of 15 variables is reduced to two variables with the utmost impact on mission performance: the repeat period of both pairs of satellites (shown to be near-optimal when they are equal to each other), as well as the inclination of one of the satellite pairs (the other pair is assumed to be in a polar orbit). To arrive at this conclusion, we assume circular orbits, repeat groundtracks for both pairs of satellites, a 100-km inter-satellite separation distance, and a minimum allowable operational satellite altitude of 290 km based on a projected 10-year mission lifetime. Given the scientific objectives of determining time-variable hydrology, ice mass variations, and ocean bottom pressure signals with higher spatial resolution, we find that an optimal architecture consists of a polar pair of satellites coupled with a pair inclined at 72deg, both in 13-day repeating orbits. This architecture provides a 67% reduction in error over one pair of satellites, in addition to reducing the longitudinal striping to such a level that minimal post-processing is required, permitting a substantial increase in the spatial resolution of the gravity field products. It should be emphasized that given different sets of scientific objectives for the mission, or a different minimum allowable satellite altitude, different architectures might be selected.

Wiese, D. N.↗
NASA NTRS2000

Database of non-canonical base pairs found in known RNA structures

Atomic resolution RNA structures are being published at an increasing rate. It is common to find a modest number of non-canonical base pairs in these structures in addition to the usual Watson-Crick pairs. This database summarizes the occurrence of these rare base pairs in accordance with standard nomenclature. The database, http://prion.bchs.uh.edu/, contains information such as sequence context, sugar pucker conformation, anti / syn base conformations, chemical shift, p K (a)values, melting temperature and free energy. Of the 29 anticipated pairs with two or more hydrogen bonds, 20 have been encountered to date. In addition, four unexpected pairs with two hydrogen bonds have been reported bringing the total to 24. Single hydrogen bond versions of five of the expected geometries have been encountered among the single hydrogen bond interactions. In addition, 18 different types of base triplets have been encountered, each of which involves three to six hydrogen bonds. The vast majority of the rare base pairs are antiparallel with the bases in the anti configuration relative to the ribose. The most common are the GU wobble, the Sheared GA pair, the Reverse Hoogsteen pair and the GA imino pair.

NASA Discipline Exobiology↗
NASA NTRS1990

Geometrical parameters of E+S pairs

Local environmental conditions (i.e., density and angular momentum properties of protogalactic clouds) are thought to be factors affecting the ultimate morphology of a galaxy. The existence of significant numbers of mixed morphology (E/SO+S) pairs of galaxies would represent a direct challenge to this idea unless all early-type components are formed by mergers. The authors wished to isolate candidate E+S pairs for detailed study. The authors have observed 22 pairs of mixed morphology galaxies (containing at least one early-type component) selected from a catalog of Sulentic (1988: unpublished) based upon the ESO sky survey. The observed sample and relevant morphological and interaction characteristics are summarized in tabular form. The authors report the relevant geometrical properties of the galaxies in another table. They list the maximum values measured for the ellipticity and the a(4)/a shape parameter together with the total measured twisting along the profile beyond the seeing disk (they set an inner limit of 3 arcsed). An asterisk indicates objects in which a(4)/a is neither predominantly boxy nor disky. They found a large number of true mixed pairs with 13/22 E+S pairs in the present sample. The remaining objects include 5 disk pairs (composed of SO and S members) and 3 early-type pairs comprising E and SO members. They estimate that between 25 and 50 percent of the pairs in any complete sample will be of the E+S type. This suggests that 100 to 200 such pairs exist on the sky brighter than m sub pg = 16.0. They found no global evidence for a difference between E members of this sample and those in more general samples (e.g., Bender et al. 1989). In particular, they found that about 30 percent of the early-type galaxies cannot be classified either predominantly boxy or disky because the a(4)/a profile shows both of these features at a comparable level or does not show any significant trend. Isophotal twisting is observed with a range and distribution consistent with general samples (delta PA between 0 to 70 degrees). Two spirals show significant twisting in their bulge components. They observed two early-type components with shell structure and at least 6 objects with twisting values greater than about 30 degrees.

Rampazzo, Roberto↗
NASA NTRS2013

Current Flow and Pair Creation at Low Altitude in Rotation-Powered Pulsars' Force-Free Magnetospheres: Space Charge Limited Flow

We report the results of an investigation of particle acceleration and electron-positron plasma generation at low altitude in the polar magnetic flux tubes of rotation-powered pulsars, when the stellar surface is free to emit whatever charges and currents are demanded by the force-free magnetosphere. We apply a new 1D hybrid plasma simulation code to the dynamical problem, using Particle-in-Cell methods for the dynamics of the charged particles, including a determination of the collective electrostatic fluctuations in the plasma, combined with a Monte Carlo treatment of the high-energy gamma-rays that mediate the formation of the electron-positron pairs.We assume the electric current flowing through the pair creation zone is fixed by the much higher inductance magnetosphere, and adopt the results of force-free magnetosphere models to provide the currents which must be carried by the accelerator. The models are spatially one dimensional, and designed to explore the physics, although of practical relevance to young, high-voltage pulsars. We observe novel behaviour (a) When the current density j is less than the Goldreich-Julian value (0 < j/j(sub GJ) < 1), space charge limited acceleration of the current carrying beam is mild, with the full Goldreich-Julian charge density comprising the charge densities of the beam and a cloud of electrically trapped particles with the same sign of charge as the beam. The voltage drops are of the order of mc(sup 2)/e, and pair creation is absent. (b) When the current density exceeds the Goldreich-Julian value (j/j(sub GJ) > 1), the system develops high voltage drops (TV or greater), causing emission of curvature gamma-rays and intense bursts of pair creation. The bursts exhibit limit cycle behaviour, with characteristic time-scales somewhat longer than the relativistic fly-by time over distances comparable to the polar cap diameter (microseconds). (c) In return current regions, where j/j(sub GJ) < 0, the system develops similar bursts of pair creation. These discharges are similar to those encountered in previous calculations by Timokhin of pair creation when the surface has a high work function and cannot freely emit charge. In cases (b) and (c), the intermittently generated pairs allow the system to simultaneously carry the magnetospherically prescribed currents and adjust the charge density and average electric field to force-free conditions. We also elucidate the conditions for pair creating beam flow to be steady (stationary with small fluctuations in the rotating frame), finding that such steady flows can occupy only a small fraction of the current density parameter space exhibited by the force-free magnetospheric model. The generic polar flow dynamics and pair creation are strongly time dependent. The model has an essential difference from almost all previous quantitative studies, in that we sought the accelerating voltage (with pair creation, when the voltage drops are sufficiently large; without, when they are small) as a function of the applied current.

Timokhin, A. N.↗
NASA NTRS2024

Terrestrial Ages and Pairing of Howardites, Eucrites and Diogenites From the Miller Range Icefields, Antarctica

In the past 45 years, the US Antarctic Meteorite (ANSMET) program has recovered more than 22,000 meteorites from more than 50 individual meteorite stranding areas. Although the Antarctic meteorite collection is dominated by ordinary chondrites which represent 80-90% of the recovered samples, it also contains many achondrites, including howardites, eucrites and diogenites, which are collectively known as HED meteorites. A challenge for the Antarctic meteorite collection is to identify paired fragments that belong to the same fall. Eight ANSMET field sea-sons at the Miller Range Icefields (MIL), a series of blue ice fields about 40 km long and 10-20 km wide, have yielded more than 3000 meteorites including 56 HEDs. At least three possible pairing groups (with 3-10 members each) were initially identified among the MIL diogenites and one each among the howardites and eucrites. Since many HED meteorites are heterogeneous breccias, pairing identifications based on cm-sized samples is difficult and other independent evidence is needed to verify these proposed pairings, as was shown for several Antarctic howardite pairing-groups. Here we re-examine pairings of HED’s from the Miller Range Icefields, using multiple lines of evidence, including texture/petrography, chemical composition, cosmogenic radionuclides and find locations. Due to the heterogeneous nature of HED meteorites, we will not only consider pairings strictly among the three HED groups, but will also consider pairing of howardites with brecciated eucrites or brecciated diogenites if the cosmogenic nuclides, texture and chemical compositions support this. The concentrations of cosmogenic radionuclides in meteorites are a function of the cosmic-ray exposure (CRE) age, shielding conditions (size and irradiation depth), chemical composition, as well the terrestrial age of the meteorite sample. Since the production rates of cosmogenic nuclides as a function of meteoroid size, depth and composition are well understood [6], their measured concentrations can be used to determine which meteorites belong to the same fall even if the chemical composition of the samples show significant variations. We selected 28 of the 56 HED samples from the MIL collection, including 12 diogenites, 8 howardites and 8 brecciated eucrites to investigate pairing relationships.

howardite↗
NASA NTRS1999

Nucleic acid duplexes incorporating a dissociable covalent base pair

We have used molecular modeling techniques to design a dissociable covalently bonded base pair that can replace a Watson-Crick base pair in a nucleic acid with minimal distortion of the structure of the double helix. We introduced this base pair into a potential precursor of a nucleic acid double helix by chemical synthesis and have demonstrated efficient nonenzymatic template-directed ligation of the free hydroxyl groups of the base pair with appropriate short oligonucleotides. The nonenzymatic ligation reactions, which are characteristic of base paired nucleic acid structures, are abolished when the covalent base pair is reduced and becomes noncoplanar. This suggests that the covalent base pair linking the two strands in the duplex is compatible with a minimally distorted nucleic acid double-helical structure.

Non-NASA Center↗
NASA NTRS1979

Penrose pair production as a power source of quasars and active galactic nuclei

Penrose pair production in massive canonical Kerr black holes (those with a/M equal to 0.998) is proposed as a way to explain the nature of the vast fluctuating energy production associated with active galactic nuclei and quasars. It is assumed that a Kerr black hole with a mass of the order of 100 million solar masses lies at the center of an active nucleus and that an accretion disk is formed. Penrose pair production in the inner ergosphere of such a massive canonical Kerr black hole is analyzed. The results indicate that: (1) particle pairs are ejected within a 40 deg angle relative to the equator; (2) the particle energy is of the order of 1 GeV per pair; (3) the pressure of the electron-positron relativistic gas is proportional to the electron-positron number density; (4) pair production may occur in bursts; and (5) the overall lifetime of an active nucleus would depend on the time required to exhaust the disk of its matter content. A test of the theory is suggested which involves observation of the 0.5-MeV pair-annihilation gamma rays that would be generated by annihilating particle pairs.

Kafatos, M.↗
NASA NTRS1983

Pair Production near Threshold in Pulsar Magnetic Fields

In pulsar polar cap models, curvature radiation gamma rays produce e(+)e(-) pairs in the strong magnetic fields near the surface of the neutron star. While these gamma rays have energies E sub gamma mc(2), they also propagate at very small angles to the fields, such that the threshold condition, E gamma 2mc(2)/sin theta is just barely satisfied when they pair produce. Threshold effects on the pair production attenuation coefficient, which are due to the discreteness of the e(+)e(-) Landau states, must therefore be considered when computing the mean free paths of curvature radiation photons in pulsar magnetic fields. These effects, which are not incorporated in the asymptotic expression for the attenuation coefficient, have some interesting consequences for pulsar models. Since pair production is suppressed near threshold, the photon mean free paths are longer than previously thought. In magnetic fields approximately 6x10 approximately G, the pairs tend to be produced in the ground state Landau level and will not synchrotron radiate. Since synchrotron radiation is an essential ingredient in the electromagnetic cascades which produce low energy pairs above the acceleration region, pulsars with very high magnetic fields may not produce many pairs.

Harding, A. K.↗
NASA NTRS1983

Pair production near threshold in pulsar magnetic fields

In Pulsar polar cap models, curvature radiation gamma-rays produce e(+) e(-) pairs in the strong magnetic fields near the surface of the neutron star. While these gamma rays havea energies E sub gamma mc(2), they also propagate at very small angies to the fields, such that the threshold condition, E gamma 2mc(2)/sin theta is just barely satisfied when they pair produce. Threshold effects on the pair production attenuation coefficient, which are due to the discreteness of the e(+) e(-) Landau states, must therefore be considered when computing the mean free paths of curvature radiation photons in pulsar magnetic fields. These effects, which are not incorporated in the asymptotic expression for the attenuation coefficient, have some interesting consequences for pulsar models. Since pair production is suppressed near threshold, the photon mean free paths are longer than previously thought. In magnetic fields greater than approximately 6 x 10 to the 12th G, the pairs tend to be produced in the ground state Landau level and will not synchrotron radiate. Since synchrotron radiation is an essential ingredient in the eiectromagnetic cascades which produce low energy pairs above the acceleration region, pulsars with very high magnetic fields may not produce many pairs.

Harding, A. K.↗