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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes

ABSTRACT Mucoromycota fungi and their Mollicutes-related endobacteria (MRE) are an ideal system for studying bacterial–fungal interactions and evolution due to the long-term and intimate nature of their interactions. However, methods for detecting MRE face specific challenges due to the poor representation of MRE in sequencing databases coupled with the high sequence divergence of their genomes, making traditional similarity searches unreliable. This has precluded estimations on the diversity of MRE associated with Mucoromycota. To determine the prevalence of previously undetected MRE in fungal genome sequences, we scanned 389 Mucoromycota genome assemblies available from the National Center for Biotechnology Information for the presence of MRE sequences using publicly available tools to map contigs from fungal assemblies to publicly available MRE genomes. We demonstrate a higher diversity of MRE genomes than previously described in Mucoromycota and a lack of cophylogeny between MRE and the majority of their fungal hosts. This supports the late invasion hypothesis regarding MRE acquisition across most of the examined fungal families. In contrast with other Mucoromycota lineages, MRE from the Gigasporaceae displayed some degree of cophylogeny with their hosts, which may indicate that horizontal transmission is restricted between members of this family or that transmission is strictly vertical. These results underscore the need for a refined process to capture sequencing data from potential fungal endosymbionts to discern their evolution and transmission. Screens of fungal genomes for MRE can help improve the quality of fungal genome assemblies while identifying new MRE lineages to further test hypotheses on their origin and evolution. IMPORTANCE Mollicutes-related endobacteria (MRE) are obligate intracellular bacteria found within Mucoromycota fungi. Despite their frequent detection, MRE roles in host functioning are still unknown. Comparative genomic investigations can improve our understanding of the impact of MRE on their fungal hosts by identifying similarities and differences in MRE genome evolution. However, MRE genomes have only been assembled from a small fraction of Mucoromycota hosts. Here, we demonstrate that MRE can be present yet undetected in publicly available Mucoromycota genome assemblies. We use these newfound sequences to assess the broader diversity of MRE and their phylogenetic relationships with respect to their hosts. We demonstrate that publicly available tools can be used to extract novel MRE sequences from assembled fungal genomes leading to insights on MRE evolution. This work contributes to a greater understanding of the fungal microbiome, which is crucial to improving knowledge on the dynamics and impacts of fungi in microbial ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2023

A publicly available PyTorch-$\mathrm{ABAQUS}$ $\mathrm{UMAT}$ deep-learning framework for level-set plasticity

Here this paper introduces a publicly available PyTorch-ABAQUS deep-learning framework of a family of plasticity models where the yield surface is implicitly represented by a scalar-valued function. In particular, our focus is to introduce a practical framework that can be deployed for engineering analysis that employs a user-defined material subroutine (UMAT/VUMAT) for ABAQUS, which is written in FORTRAN. To accomplish this task while leveraging the back-propagation learning algorithm to speed up the neural-network training, we introduce an interface code where the weights and biases of the trained neural networks obtained via the PyTorch library can be automatically converted into a generic FORTRAN code that can be a part of the UMAT/VUMAT algorithm. To enable third-party validation, we purposely make all the data sets, source code used to train the neural-network-based constitutive models, and the trained models available in a public repository. Furthermore, the practicality of the workflow is then further tested on a dataset for anisotropic yield function to showcase the extensibility of the proposed framework. A number of representative numerical experiments are used to examine the accuracy, robustness and reproducibility of the results generated by the neural network models.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Impact Study of Thunderstorms on the US Power Grid Using Publicly Available Datasets

This work analyzes the impact of thunderstorms on the US power grid based on publicly available data. Since thunderstorms can bring lightning, heavy precipitation, and wind storms, analyzing their impact on the power system provides a combined correlation of lightning strikes, floods, and wind storms on power outages. This paper leverages publicly available thunderstorm datasets from the National Weather Service (NWS) and power outage datasets from Oak Ridge National Laboratory’s Environment for Analysis of Geo-Located Energy Information (EAGLE-I) to study the correlation between thunderstorms and power outages. This work is analyzing the patterns of thunderstorms from 2013-2022, which shows that the thunderstorms are not slowing down and will seem to continue their impact on human life in the future. This work also analyzes the monthly and yearly pattern of the impact of thunderstorms on power systems at the national, state, and county level.

Bhusal, Narayan↗
DOE OSTI2024

Publicly Available Molten Salt Data/Benchmarks

This presentation summarizes data for three molten salt reactors that has been made publicly available by Copenhagen Atomics. This information will be shared with the participants of the OECD/NEA International Reactor Physics Experiment Evaluation (IRPhE) Technical Review Group.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
NASA NTRSDate not supplied

The Mars Climate Modeling Center at NASA Ames Research Center: Overview of Recent Science, Model Development, and Progress Making Tools Publicly Available and Accessible

In addition to conducting science investigations on the atmosphere and climate of Mars, a main function of the Mars Climate Modeling Center at NASA Ames Research Center is to develop, maintain, and make available to the community state-of-the-art Mars Global Climate Models (MGCMs). Our goal here is to present the status of the Ames MGCM, an overview of our ongoing science projects, the tools we have recently made publicly available, and our plans for releases and continued community engagement.

M A Kahre↗
NASA NTRS1998

LDAR, A Three-Dimensional Lightning Warning System: Its Development and Use by the Government, and Transition to Public Availability

NASA, at the John F. Kennedy Space Center (KSC), developed and operates a unique high precision lightning location system to provide lightning related weather warnings. These warnings are used to stop lightning-sensitive operations such as space vehicle launches and ground operations where equipment and personnel are at risk. The data is provided to the Range Weather Operations [45th Weather Squadron, U. S. Air Force (USAF)] where it is used with other meteorological data to issue weather advisories and warnings for Cape Canaveral Air Station (CCAS) and KSC operations. This system, called Lightning Detection and Ranging (LDAR), provides users with a graphical display in three dimensions of 66 MHz radio frequency events generated by lightning processes. The locations of these events provide a sound basis for the prediction of lightning hazards. NASA and Global Atmospherics, Inc. are developing a new system that will replace the unique LDAR components with commercially available and maintainable components having improved capabilities. These components will be phased in to ensure full continuity and access to this important warning technology. These LDAR systems are expected to eventually be available for installation and use by the public at specialized facilities, such as airports, and for general weather warnings via the National Weather Service (NWS) or television broadcast. The NWS in Melbourne has had access to real-time LDAR data since 1993 on an experimental basis. This use of LDAR has shown promise for the improvement of aviation forecasts and severe weather warnings. More so, it has opened the door to investigate the feasibility of issuing lightning-related public advisories. The success of its early use suggests that this technology may improve safety and potentially save lives, therefore constituting a significant benefit to the public. This paper describes the LDR system, the plans and progress of these upgrades, and the potential benefits of its use.

Starr, Stan↗
DOE OSTI2024

Deploying a Publicly Available and Living National Oil and Gas Well Geodatabase: CO2-Locate: A Dynamic Database & Tool

Emission mitigation and safe geologic carbon storage require an understanding of local wellbore infrastructure, yet well data are siloed across many entities. Addressing this challenge, the National Energy Technology Laboratory published CO2-Locate, an integrated and dynamic national wellbore geodatabase. CO2-Locate offers up to date well data spanning more than 40 federal, state, and tribal entities, as well as spatially summarized insights designed to support commercial, regulatory, and research communities as they strive to curb climate change through a national energy transition.

Pfander, Isabelle↗
NASA NTRS1985

The final COS-B database now publicly available

The data obtained by the gamma ray satellite COS-B was processed, condensed and integrated together with the relevant mission and experiment parameters into the Final COS-B Database. The database contents and the access programs available with the database are outlined. The final sky coverage and a presentation of the large scale distribution of the observed Milky Way emission are given. The database is announced to be available through the European Space Agency.

Mayer-Hasselwander, H. A.↗
NASA NTRS2001

Publicly Available Numerical Codes for Modeling the X-ray and Microwave Emissions from Solar and Stellar Activity

We have posted numerical codes on the Web for modeling the bremsstrahlung x-ray emission and the a gyrosynchrotron radio emission from solar and stellar activity. In addition to radiation codes, steady-state and time-dependent Fokker-Planck codes are provided for computing the distribution and evolution of accelerated electrons. A 1-D hydrodynamics code computes the response of the stellar atmosphere (chromospheric evaporation). A code for modeling gamma-ray line spectra is also available. On-line documentation is provided for each code. These codes have been developed for modeling results from the High Energy Solar Spectroscopic Imager (HESSI) along related microwave observations of solar flares. Comprehensive codes for modeling images and spectra of solar flares are under development. The posted codes can be obtained on NASA/Goddard's HESSI Web Site at http://hesperia.gsfc.nasa.gov/hessi/modelware.htm. This work is supported in part by the NASA Sun-Earth Connection Program.

Holman, Gordon D.↗
DOE OSTI2023

Effect of image resolution on automated classification of chest X-rays

Deep learning (DL) models have received much attention lately for their ability to achieve expert-level performance on the accurate automated analysis of chest X-rays (CXRs). Recently available public CXR datasets include high resolution images, but state-of-the-art models are trained on reduced size images due to limitations on graphics processing unit memory and training time. As computing hardware continues to advance, it has become feasible to train deep convolutional neural networks on high-resolution images without sacrificing detail by downscaling. This study examines the effect of increased resolution on CXR classification performance. We used the publicly available MIMIC-CXR-JPG dataset, comprising 377,110 high resolution CXR images for this study. We applied image downscaling from native resolution to 2048 × 2048 pixels, 1024 × 1024 pixels, 512 × 512 pixels, and 256 × 256 pixels and then we used the DenseNet121 and EfficientNet-B4 DL models to evaluate clinical task performance using these four downscaled image resolutions. We find that while some clinical findings are more reliably labeled using high resolutions, many other findings are actually labeled better using downscaled inputs. We qualitatively verify that tasks requiring a large receptive field are better suited to downscaled low resolution input images, by inspecting effective receptive fields and class activation maps of trained models. Lastly, we show that stacking an ensemble across resolutions outperforms each individual learner at all input resolutions while providing interpretable scale weights, indicating that diverse information is extracted across resolutions.

47 OTHER INSTRUMENTATION↗
DOE OSTI2025

AI for Earthquake Physics

The core LANL program sponsored by Office of Science, Basic Energy Science, Chemical Sciences, Geosciences, and Biosciences (DOE-BES-CSGB) and led by PI Johnson aims to research earthquake faults to advance fault physics and earthquake hazards. All work completed is required to be made publicly available through publications and open-source codes supporting the published results. All routines are/will-be written in open source python and applied to publicly available data sets. These routines will format data from input into models, develop and test modeling frameworks for the problems addressed, and produce figures applicable to peer-reviewed manuscripts. All work is reviewed for Los Alamos Unlimited Release before submitting to a journal. This summary encompasses recently completed work and work to be complete for the duration of the program.

Johnson, Christopher↗
DOE OSTI2025

University Data Management Pilot Utilizing the Nuclear Research Data System

Background In 2022, the Office of Science and Technology Policy (OSTP) issued a memo that significantly reshaped the landscape of access to federally funded research. The memo mandated that all taxpayer-funded research be made available to the public without delay upon publication, without an embargo period, superseding the 2013 OSTP public access policy. This public access policy promotes transparency and the democratization of knowledge, ensuring that the fruits of scientific endeavors funded by federal agencies could be immediately accessed and built upon by scientists, educators, students, and the public at large. To implement the requirements of the OSTP guidance and DOE Public Access Plan, the Office of Nuclear Energy (NE) has implemented public access plan guidance and has identified several areas where better data management practices would further expand public access to important nuclear energy related scientific data, reports, and other technical products. Significant NE supported efforts are already underway for data management and public access to important nuclear energy related data.1 2 To address gaps in data management practices, and improve retention and accessibility of data, NE is actively exploring enhanced data management options utilizing its high-performance computing resources administered by its Nuclear Scientific User Facility Program. A newly piloted system, the Nuclear Research Data System (NRDS) acts as a portal for data collection and dissemination. Nuclear Energy University Program Research and Development Portfolio According to Web of Science, NEUP has produced 2,345 journal publication that have been cited more than 61,000 times3 and countless conference proceedings. These publications are publicly available through OSTI.gov and in the open literature. Additional scientific and technical products including project milestones that are not publications and NEUP project final reports are vetted through OSTI.gov and released once reviewed and approved by DOE. Since 2009, NEUP has awarded close to 1,000 different R&D projects in technical areas across the NE research programs. As of June 2023, 512 NEUP reports are publicly available on OSTI. The underlying data for projects is still held at universities, and data transfer, co-location, and dissemination has not occurred in a systematic way. NEUP data is currently accessible through myriad university-based data repositories, or through direct requests to PIs. The program identified this patchwork of repositories, or often lack of publicly available data, as a significant barrier to an organized, accessible, and comprehensive solution to sharing data with the larger nuclear energy community. Approach The goal of this pilot project is to establish a pathway to a consolidated long-term repository for NEUP project data. To accomplish this goal, the pilot strives to accomplish the following objectives: Establish data collection standards, including a standard set of required supplementary information to contextualize and support raw data files. Work with the HPC group collect and upload information and to modify the NRDS system, as needed, to support a standardized approach. Resolve potential barriers to successful roll out of an expanded data collection strategy, including modifying data management plan guidelines and establishing a document and data release process that accounts for potential intellectual property and/or export control concerns. Results Overall, the pilot was successful in collecting 8,982 raw and processes data files, 220 reports, 56 calibration files, and 5,931 other supplementary documents. Supplementary documents included experimental plans, methods, journal publications and conference proceedings, milestone reports, and final reports. Figure 2 shows the number of data sets and supplementary project information provided by each project. Projects has significantly different input, depending on experimental data produced and completeness of the datasets provided.

Data collection↗