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At least 19 records

Understanding Climate-Vegetation Interactions in Global Rainforests Through a GP-Tree Analysis

The tropical rainforests are the largest reserves of terrestrial carbon and, therefore, the future of these rainforests is a question that is of immense importance in the geoscience research community. With the recent severe Amazonian droughts in 2005 and 2010 and on-going drought in the Congo region for more than two decades, there is growing concern that these forests could succumb to precipitation reduction, causing extensive carbon release and feedback to the carbon cycle. However, there is no single ecosystem model that quantifies the relationship between vegetation health in these rainforests and climatic factors. Small scale studies have used statistical correlation measure and simple linear regression to model climate-vegetation interactions, but suffer from the lack of comprehensive data representation as well as simplistic assumptions about dependency of the target on the covariates. In this paper we use genetic programming (GP) based symbolic regression for discovering equations that govern the vegetation climate dynamics in the rainforests. Expecting micro-regions within the rainforests to have unique characteristics compared to the overall general characteristics, we use a modified regression-tree based hierarchical partitioning of the space to build individual models for each partition. The discovery of these equations reveal very interesting characteristics about the Amazon and the Congo rainforests. Our method GP-tree shows that the rainforests exhibit tremendous resiliency in the face of extreme climatic events by adapting to changing conditions.

genetic programming↗

Simulating Forest Dynamics of Lowland Rainforests in Eastern Madagascar

Ecological modeling and forecasting are essential tools for the understanding of complex vegetation dynamics. The parametric demands of some of these models are often lacking or scant for threatened ecosystems, particularly in diverse tropical ecosystems. One such ecosystem and also one of the world's biodiversity hotspots, Madagascar's lowland rainforests, have disappeared at an alarming rate. The processes that drive tree species growth and distribution remain as poorly understood as the species themselves. We investigated the application of the process-based individual-based FORMIND model to successfully simulate a Madagascar lowland rainforest using previously collected multi-year forest inventory plot data. We inspected the model's ability to characterize growth and species abundance distributions over the study site, and then validated the model with an independently collected forest-inventory dataset from another lowland rainforest in eastern Madagascar. Following a comparative analysis using inventory data from the two study sites, we found that FORMIND accurately captures the structure and biomass of the study forest, with r(squared) values of 0.976, 0.895, and 0.995 for 1:1 lines comparing observed and simulated values across all plant functional types for aboveground biomass (tonnes/ha), stem numbers, and basal area (m(squared)/ha), respectively. Further, in validation with a second study forest site, FORMIND also compared well, only slightly over-estimating shade-intermediate species as compared to the study site, and slightly under-representing shade-tolerant species in percentage of total aboveground biomass. As an important application of the FORMIND model, we measured the net ecosystem exchange (NEE, in tons of carbon per hectare per year) for 50 ha of simulated forest over a 1000-year run from bare ground. We found that NEE values ranged between 1 and -1 t Cha(exp -1)year(exp -1), consequently the study forest can be considered as a net neutral or a very slight carbon sink ecosystem, after the initial 130 years of growth. Our study found that FORMIND represents a valuable tool toward simulating forest dynamics in the immensely diverse Madagascar rainforests.

Forest Productivity↗

Widespread Increase of Boreal Summer Dry Season Length Over the Congo Rainforest

Dry season length strongly influences tropical rainforest vegetation and is largely determined by precipitation patterns. Over the Amazon, the dry season length has increased since 1979 and severe short-term droughts have occurred. However, similar changes have not been investigated for the world’s second largest rainforest, the Congo Basin, where long-term drying and large-scale declines in forest greenness and canopy water content were reported. Here we present observational evidence for widespread increases in the boreal summer (June–August) dry season length over the Congo Basin since the 1980s, from both hydrological and ecological perspectives. We analyzed both dry season onset and dry season end via multiple independent precipitation and satellite derived vegetation datasets for the period 1979–2015. The dry season length increased by 6.4–10.4 days per decade in the period 1988–2013, primarily attributed to an earlier dry season onset and a delayed dry season end. The earlier dry season onset was caused by long-term droughts due to decreased rainfall in the pre-dry season (April–June). The delayed dry season end resulted from insufficiently replenished soil moisture, which postpones the start of the next wet season and hinders vegetation regrowth. If such changes continue, the enhanced water stress in a warming climate may affect the carbon cycle and alter the composition and structure of evergreen rainforest.

Congo rainforest growing season NDVI SIF↗

Escape Ratio Contributes More Than Fluorescence Yield to SIF-GPP Relationship Over Crops and Rainforest

Solar-induced chlorophyll fluorescence (SIF) is an effective indicator to track the gross primary productivity (GPP). However, there is still a lack of a clear understanding for the contribution of physiological and structural factors to the SIF–GPP relationship at the canopy scale. To quantify the influence of different SIF components, particularly the photon escape ratio ($f$ esc ) and fluorescence yield (Φ F ), on the SIF–GPP relationship, this study evaluated the performance of various vegetation indices (VIs), SIF components, light use efficiency (LUE), and GPP over two typical biomes (crops and rainforest), using a range of satellite remote sensing products. In August of each year from 2018 to 2020, both SIF and GPP over United States (U.S.) Corn Belt are higher than those over the Amazon rainforest, attributed to the consistent pattern of higher $f$ esc and LUE over crops than over rainforest, as well as Φ F . Furthermore, the structural signals represented by $f$ esc (R = 0.41–0.64) can better capture the LUE variations than Φ F (R = 0.10–0.30) for each biome. In conclusion, this study highlights that $f$ esc , determined by canopy structure, has great potential to capture LUE and GPP changes within and across biomes.

60 APPLIED LIFE SCIENCES↗

Anomalous Net Biome Exchange Over Amazonian Rainforests Induced by the 2015/16 El Niño: Temperature-dominated Total Flux but Soil Dryness-Shaped Spatial Pattern

The magnitude and spatial pattern of anomalous net biome exchange (NBE) induced by the 2015/16 El Niño over Amazonian rainforests remain uncertain. We here investigated them using multi-model posterior NBE products in the Orbiting Carbon Observatory-2 (OCO-2) version 10 modeling intercomparison project. Results suggest that relative to the annual NBE average in 2017/18, larger anomalous carbon release occurred over the eastern and northern Amazonian rainforests in 2015/16, with a total flux of approximately 0.4 PgC yr−1 after assimilating satellite-observed column CO2 concentrations (XCO2) over land. We further find that this anomalous spatial pattern was predominantly determined by soil dryness, while the total positive NBE anomaly was dominated by higher temperature with its contribution of approximately 68~70%. We believe that atmospheric inversions assimilating more satellite-observed XCO2 in future can provide us more comprehensive understanding how Amazonian rainforests cope with the abiotic stresses induced by El Niño events.

Jun Wang↗

Vanderwaltozyma urihicola sp. nov., a yeast species isolated from rotting wood and beetles in a Brazilian Amazonian rainforest biome

Five yeast isolates belonging to a candidate for novel species were obtained from rotting wood and the gut of a passalid beetle larva in a site of Amazonian rainforest biome in Brazil. Sequence analysis of the Internal Transcribed Spacer (ITS)-5.8S region and the D1/D2 domains of the large subunit rRNA gene showed that the isolates represent a novel species of the genus Vanderwaltozyma. The closest relative of the novel species is Vanderwaltozyma huisunica. These species differs due to 44 nt substitutions and 21 indels in the sequences of the ITS region, as well as by 15 substitutions and four indels in the sequences of the D1/D2 domains. A phylogenomic analysis of the Vanderwaltozyma species with genomes sequenced showed that this novel species is an outgroup to the other species of this genus. We propose the name Vanderwaltozyma urihicola sp. nov. (CBS 18107T, MycoBank MB 856975) to accommodate these isolates. Furthermore, the species is homothallic, producing one to two ascospores per ascus. The habitat of V. urihicola is rotting wood in the Brazilian Amazonian rainforest biome.

Amazonian Forest↗

IN11B-1621: Quantifying How Climate Affects Vegetation in the Amazon Rainforest

Amazon droughts in 2005 and 2010 have raised serious concern about the future of the rainforest. Amazon forests are crucial because of their role as the largest carbon sink in the world which would effect the global warming phenomena with decreased photosynthesis activity. Especially, after a decline in plant growth in 1.68 million km2 forest area during the once-in-a-century severe drought in 2010, it is of primary importance to understand the relationship between different climatic variables and vegetation. In an earlier study, we have shown that non-linear models are better at capturing the relation dynamics of vegetation and climate variables such as temperature and precipitation, compared to linear models. In this research, we learn precise models between vegetation and climatic variables (temperature, precipitation) for normal conditions in the Amazon region using genetic programming based symbolic regression. This is done by removing high elevation and drought affected areas and also considering the slope of the region as one of the important factors while building the model. The model learned reveals new and interesting ways historical and current climate variables affect the vegetation at any location. MAIAC data has been used as a vegetation surrogate in our study. For temperature and precipitation, we have used TRMM and MODIS Land Surface Temperature data sets while learning the non-linear regression model. However, to generalize the model to make it independent of the data source, we perform transfer learning where we regress a regularized least squares to learn the parameters of the non-linear model using other data sources such as the precipitation and temperature from the Climatic Research Center (CRU). This new model is very similar in structure and performance compared to the original learned model and verifies the same claims about the nature of dependency between these climate variables and the vegetation in the Amazon region. As a result of this study, we are able to learn, for the very first time how exactly different climate factors influence vegetation at any location in the Amazon rainforests, independent of the specific sources from which the data has been obtained.

global warming↗

A Multi-scaled Analysis of Forest Structure using Individual-Based Modeling in a Costa Rican Rainforest

Consideration of scale is essential when examining structural relationships in forests. In this study, we present a parameterization of the FORMIND individual-based forest model for old growth Atlantic lowland rainforest in La Selva, Costa Rica. Results show that the simulated forest reproduces the structural complexity of Costa Rican rainforest within 2.3% of aboveground biomass values, based on comparisons with CARBONO inventory plot data. The Costa Rica FORMIND simulation was then used to investigate the relationship between canopy height and aboveground biomass (AGB), leaf area index (LAI) and gross primary productivity (GPP) at different spatial scales (20 × 20 m, 60 × 60 m, 100mx100m). The relationship between aboveground biomass and height is of particular importance toward the calibration of various remote sensing products including lidar and radar, whereas the LAI and GPP relationships are understudied in this context. We found that the relationship between all three variables and height varies considerably: the relationship is stronger at finer scales and weaker at coarser resolution. However, in all three comparisons, RMSE also decreased as scales coarsened, with the largest difference shown between 100 m and 10 m resolutions in relating AGB to Lorey's height (R^2 decreased by 0.3; RMSE decreased by 114.5 Mg/ha). This suggests that a trade-off between accuracy and precision exists, and further highlights the importance of spatial scale in determining the relatability of forest structure variables.

A.H.Armstrong↗

Effects of Amazonian Flying Rivers on Frog Biodiversity and Populations in the Atlantic Rainforest

Given the speed at which humans are changing the climate, species with high degrees of endemism may not have time to avoid extinction through adaptation. We investigated through teleconnection analysis the origin of rainfall that determines the phylogenetic diversity of rainforest frogs and the effects of microclimate differences in shaping the morphological traits of isolated populations (which contribute to greater phylogenetic diversity and speciation). We also investigated through teleconnection analysis how deforestation in Amazonia can affect ecosystem services that are fundamental to maintaining the climate of the Atlantic rainforest biodiversity hotspot. Seasonal winds known as flying rivers carry water vapor from Amazonia to the Atlantic Forest, and the breaking of this ecosystem service could lead Atlantic Forest species to population decline and extinction in the short term. Our results suggest that the selection of morphological traits that shape Atlantic Forest frog diversity and their population dynamics are influenced by the Amazonian flying rivers. Our results also suggest that the increases of temperature anomalies in the Atlantic Ocean due to global warming and in the Amazon forest due to deforestation are already breaking this cycle and threaten the biodiversity of the Atlantic Forest hotspot.

anurans↗

Advancing an integrated understanding of land–ocean connections in shaping the marine ecosystems of coastal temperate rainforest ecoregions

Land and ocean ecosystems are strongly connected and mutually interactive. As climate changes and other anthropogenic stressors intensify, the complex pathways that link these systems will strengthen or weaken in ways that are currently beyond reliable prediction. In this review we offer a framework of land–ocean couplings and their role in shaping marine ecosystems in coastal temperate rainforest (CTR) ecoregions, where high freshwater and materials flux result in particularly strong land–ocean connections. Using the largest contiguous expanse of CTR on Earth—the Northeast Pacific CTR (NPCTR)—as a case study, we integrate current understanding of the spatial and temporal scales of interacting processes across the land–ocean continuum, and examine how these processes structure and are defining features of marine ecosystems from nearshore to offshore domains. We look ahead to the potential effects of climate and other anthropogenic changes on the coupled land–ocean meta-ecosystem. Finally, we review key data gaps and provide research recommendations for an integrated, transdisciplinary approach with the intent to guide future evaluations of and management recommendations for ongoing impacts to marine ecosystems of the NPCTR and other CTRs globally. In the light of extreme events including heatwaves, fire, and flooding, which are occurring almost annually, this integrative agenda is not only necessary but urgent.

54 ENVIRONMENTAL SCIENCES↗

Mapping Deforestation and Land Use in Amazon Rainforest Using SAR-C Imagery

Land use changes and deforestation in tropical rainforests are among the major factors affecting the overall function of the global environment. To routinely assess the spatial extend and temporal dynamics of these changes has become an important challenge in several scientific disciplines such as climate and environmental studies. In this paper, the feasibility of using polarimetric spaceborne SAR data in mapping land cover types in the Amazon is studied.

SAR-C Imagery Amazon Rainforest Land Use Deforesta↗

Community‐Level Metabolic Shifts Following Land Use Change in the Amazon Rainforest Identified by a Supervised Machine Leaning Approach

ABSTRACT The Amazon rainforest has been subjected to high rates of deforestation, mostly for pasturelands, over the last few decades. This change in plant cover is known to alter the soil microbiome and the functions it mediates, but the genomic changes underlying this response are still unresolved. In this study, we used a combination of deep shotgun metagenomics complemented by a supervised machine learning approach to compare the metabolic strategies of tropical soil microbial communities in pristine forests and long‐term established pastures in the Amazon. Machine learning‐derived metagenome analysis indicated that microbial community structures (bacteria, archaea and viruses) and the composition of protein‐coding genes were distinct in each plant cover type environment. Forest and pasture soils had different genomic diversities for the above three taxonomic groups, characterised by their protein‐coding genes. These differences in metagenome profiles in soils under forests and pastures suggest that metabolic strategies related to carbohydrate and energy metabolisms were altered at community level. Changes were also consistent with known modifications to the C and N cycles caused by long‐term shifts in aboveground vegetation and were also associated with several soil physicochemical properties known to change with land use, such as the C/N ratio, soil temperature and exchangeable acidity. In addition, our analysis reveals that these alterations in land use can also result in changes to the composition and diversity of the soil DNA virome. Collectively, our study indicates that soil microbial communities shift their overall metabolic strategies, driven by genomic alterations observed in pristine forests and long‐term established pastures with implications for the C and N cycles.

carbon and nitrogen cycles↗

Weak influence of anthropogenic emissions on aerosol, cloud, and rain in the wet season of the Amazon rainforest

Anthropogenic emissions have been shown to affect new particle formation, aerosol concentrations, and clouds. Such effects vary with region, environmental conditions, and cloud types. In the wet season of Amazonia, anthropogenic emissions emitted from Manaus, Brazil, can significantly increase the cloud condensation nuclei (CCN) concentrations compared to the background of mainly natural aerosols. However, the regional response of cloud and rain to anthropogenic emissions in Amazonia remains very uncertain. Here, we aim to quantify how aerosol concentration, cloud, and rain respond to changes in anthropogenic emissions through parameterized new particle formation and primary aerosol emission in the Manaus region and to understand the underlying mechanisms. We ran the atmosphere-only configuration of the HadGEM3 climate model with a nested regional domain that covers most of the rainforest region (720 km by 1200 km with 3 km resolution) under scaled regional emissions. The 7 d simulations show that, in the areas that are affected by anthropogenic emissions, when aerosol and precursor gas emissions are doubled from the baseline emission inventories, aerosol number concentrations increase by 13 %. The nucleation rate that involves sulfuric acid and biogenic compounds generally increases with pollution levels. However, nucleation is suppressed very close to the pollution source, resulting in lower nucleation and soluble Aitken mode aerosol number concentrations. We also found that doubling the anthropogenic emission can increase the cloud droplet number concentrations ( N d ) by 9 %, but cloud water and rain mass mixing ratios do not change significantly. Even very strong reductions in aerosol number concentrations by a factor of 4, which is an unrealistic condition, cause only a 4 % increase in rain over the domain. If we assume our simulation has a fine enough grid resolution and an accurate representation of the relevant atmospheric processes, the simulated weak and non-linear response of cloud and rain properties to linearly scaled anthropogenic emissions suggests that the interactions among aerosol, cloud, and precipitation in the Amazonian convective environment are buffered by microphysical processes. It also implies that the convective environment is resilient to the changes in Nd that occur in response to localized anthropogenic aerosol perturbations.

Wang, Xuemei [University of Leeds (United Kingdom)↗

Seasonal and Diurnal Opportunities for XCH4, XCO2, and XCO for the Amazonian Rainforest Region Allowing Sampling and Validation

There is considerable interest in the aggregate methane emissions from the Amazon and similar moist tropical regions, and XCH4 measurements are well suited to constrain sources to the global atmosphere. Similarly, XCO2 measurements constrain CO2 in the region. XCO helps to partition CO2 patterns among burning and respiration processes. GeoCarb may allow these column measurements over the Western Hemisphere, but satellite retrieval require exacting calibration and validation by sun-focused Fourier transform spectrometers (FTS). The rarity of sufficiently large gaps in the cloud cover over the Amazon and similar rainforests restricts the validation opportunities for useful FTS observations and even more the opportunities for accurate retrievals. TropOMI observational statistics are extremely poor for the region. We have used two data sources to evaluate FTS opportunities at Manaus, Brazil, an FTS operated for 8 months near Manaus by Mavendra Dubey, and also sun-photometer measurements at several stations. The promise of using data from other satellites, e.g. GOES-16 ( (Geostationary Operational Environmental Satellite) and CALIOP (Cloud-Aerosol LIdar with Orthogonal Polarization gaps and aerosol layering will be described. We report initial results on five questions: (1) how frequent are observing opportunities of FTS?, (2) What evidence is there that gaps in clouds are wide enough for satellite retrievals at an appropriate accuracy, (3) What is the diurnal and seasonal variability of cloud gaps?, and (4) What limitations are currently suggested for unbiased FTS measurement of XCH4 due to diurnal effects, and (5) What evidence is there for incidence of problematic high aerosol extinction at higher layers of the troposphere (800 hPa to 120 hPa) which alter the XCH4 light-paths?

Chatfield, Robert↗

Panama Rainforest Changes with Experimental Drought (PaRChED): Initial Effects of Partial Throughfall Exclusion on Soil Dynamics in Lowland Forests Across Variation in Rainfall and Soil Fertility

Changes in rainfall are predicted across tropical regions, with effects on nutrient, water, and carbon cycling. This chapter summarizes results from the first two years of a throughfall exclusion experiment in four lowland Panamanian forests that span a 1,000-mm change in rainfall and variation in soil fertility. Soil respiration (i.e., soil carbon dioxide [CO2 ] flux) declined with throughfall exclusion, with a site*season interaction, and the radiocarbon age of respired carbon was older in exclusion versus control plots. The decline in soil CO2 flux could be related to reduced fine root production and soil microbial biomass. Microbial community composition also changed with throughfall exclusion in infertile soils, and soil nutrients accumulated more in exclusion versus control plots during the dry season. The net effects on soil carbon storage will depend on the relative strengths of these effects over time. Continued research could improve predictions of tropical forest-climate feedbacks with changes in precipitation.

54 ENVIRONMENTAL SCIENCES↗