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Results for “ring penetration”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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6 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

LongBondEliminator: A Molecular Simulation Tool to Remove Ring Penetrations in Biomolecular Simulation Systems

We develop a workflow, implemented as a plugin to the molecular visualization program VMD, that can fix ring penetrations with minimal user input. LongBondEliminator, detects ring piercing artifacts by the long, strained bonds that are the local minimum energy conformation during minimization for some assembled simulation system. The LongBondEliminator tool then automatically treats regions near these long bonds using multiple biases applied through NAMD. By combining biases implemented through the collective variables module, density-based forces, and alchemical techniques in NAMD, LongBondEliminator will iteratively alleviate long bonds found within molecular simulation systems. Through three concrete examples with increasing complexity, a lignin polymer, an viral capsid assembly, and a large, highly glycosylated protein aggrecan, we demonstrate the utility for this method in eliminating ring penetrations from classical MD simulation systems. The tool is available via gitlab as a VMD plugin, and has been developed to be generically useful across a variety of biomolecular simulations.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

RingIR AG-4000 Testing

The AG-4000 detector can identify gas phase species using molecular fingerprinting and has potential application for SARS-CoV-2 detection in near real time. As part of the development process Sandia will utilize the biological aerosol test bed deployed at the Aerosol Complex to evaluate the penetration of MS2 bacteriophage aerosol through the Ring IR system. The objective of this project is to provide experimentally derived measurements of the RingIR AG-4000 penetration efficiency, including external exhaust filter for mitigation of exhaust aerosol and operation using MS2 bacteriophage as a biological surrogate to the SARS-CoV-2 virus.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

Reversible ratchet effects in a narrow superconducting ring

We study the ratchet effect in a narrow pinning-free superconductive ring based on time-dependent GinzburgLandau (TDGL) equations. Voltage responses to external dc and ac currents at various magnetic fields are studied. Due to asymmetric barriers for flux penetration and flux exit in the ring-shaped superconductor, the critical current above which the flux-flow state is reached, as well as the critical current for the transition to the normal state, are different for the two directions of applied current. Furthermore, these effects cooperatively cause ratchet signal reversal at high magnetic fields, which has not been reported to date in a pinning-free system. The ratchet signal found here is larger than those induced by asymmetric pinning potentials. Our results also demonstrate the feasibility of using mesoscopic superconductors to employ a superconducting diode effect in versatile superconducting devices.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
DOE OSTI2023

Stability of multi-population traffic flows

Traffic waves, known also as stop-and-go waves or phantom jams, appear naturally as traffic instabilities, also in confined environments as a ring-road. A multi-population traffic is studied on a ring-road, comprised of drivers with stable and unstable behavior. There exists a critical penetration rate of stable vehicles above which the system is stable, and under which the system is unstable. In the latter case, stop-and-go waves appear, provided enough cars are on the road. The critical penetration rate is explicitly computable, and, in reasonable situations, a small minority of aggressive drivers is enough to destabilize an otherwise very stable flow. This is a source of instability that a single population model would not be able to explain. Also, the multi-population system can be stable below the critical penetration rate if the number of cars is sufficiently small. Instability emerges as the number of cars increases, even if the traffic density remains the same (i.e., number of cars and road size increase similarly). This shows that small experiments could lead to deducing imprecise stability conditions.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Apple Bitter Rot: Biology, Ecology, Omics, Virulence Factors, and Management of Causal Colletotrichum Species

ABSTRACT Apple bitter rot is caused by various Colletotrichum spp. that threaten apple production globally resulting in millions of dollars in damage annually. The fungus causes a decline in fruit quality and yield, eventually rotting the fruit and rendering it inedible. The pathogen is difficult to keep out of orchards because of its broad host range and transmissibility by rain splash and insects. Once the disease manifests, pathogen identification is difficult due to evolving taxonomy and similar morphology between species. Current management strategies are threatened by an increase in fungicide resistance and regulations on many multisite fungicides, leading to a pressing need for new management options for control. This review aims to summarise the most current knowledge regarding the biology, virulence factors, ecology, omics and emerging management strategies for Colletotrichum species that cause apple bitter rot. Taxonomy Colletotrichum species—Domain Eukaryota, Kingdom Fungi, Phylum Ascomycota, Class Sordariomycetes, Order Glomerellales, Family Glomerellaceae, Genus Colletotrichum . Biology Hemibiotrophic pathogen with a wide host range that establishes a biotrophic interaction where it penetrates host plants using appressoria followed by a switch to necrotrophy causing rot symptoms. Toxins Cercosporin, colletotrichins, colletotric acid, ferricrocin. Host Range The host range varies by species but largely occurs on dicotyledonous plants and is less prevalent on monocots as well as gymnosperms, ferns, mosses and animals (e.g., insects). Disease Symptoms Symptoms often manifest as flat to sunken necrotic areas on fruit. Lesions on leaves and fruit can have concentric rings with abundant pathogen sporulation. Disease Control Colletotrichum spp. are primarily managed by single‐site quinone outside inhibitor (Qol), methyl benzimidazole carbamate (MBC), demethylation inhibitor (DMI) fungicides, and multisite dithiocarbamate and phthalimide fungicides. Susceptibility may vary with species, strain specificity, or geographic region. Other management options include clean stock production, cultural practices, resistance breeding, and biological control through the introduction of protective or competing microorganisms.

Boeckman, Nathanial J. [Plant Pathology Laboratory↗
DOE OSTI2021

Transmission of Images on High-Temperature Nuclear-Grade Metallic Pipe with Ultrasonic Elastic Waves

Transmission of information using elastic ultrasonic waves on existing metallic pipes provides an alternative communication option for a nuclear facility. The advantages of this approach consist of transmitting information through barriers, such as the containment building wall, with minimal modification of the existing hardware. Because bit rates on the order of kilobits per second are achievable, relatively large volumes of data, such as images, can be transmitted. A viable candidate for an ultrasonic communication channel is a stainless steel pipe of the chemical volume control system (CVCS) that penetrates through the reactor containment building wall through a sealed tunnel. To study ultrasonic communication under simulated nuclear facility conditions of high temperature, a test article was developed by installing heating tapes, temperature controllers, and thermal insulation on a laboratory CVCS-like stainless steel pipe. High temperature and radiation-resilient lithium niobate ultrasonic transducers were utilized for information transmission on the heated pipe. The amplitude shift keying (ASK) digital communication protocol was developed and implemented in a GNU Radio software-defined radio environment. A root-raised-cosine filter was introduced to suppress ultrasonic transducer ringing and thus reduce inter-symbol interference. This resulted in the enhancement of the data transmission bit rate compared to information encoding with square pulses. Demonstrations of communication at high temperature included transmission of a 90-KB image at the bit rate of 10 Kbps with a bit error rate of 10 -3 across a 6-ft-long straight pipe heated up to 230 degrees C. Additional preliminary studies were conducted to evaluate ultrasonic communication system resilience to environmental degradation and damage.

42 ENGINEERING↗