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All sources NASA NTRS DOE OSTI

DOE OSTI2020

FATES size- and age-dependent mortality simulation output analysis scripts

This dataset contains python scripts to analyse outputs from the Functionally Assembled Terrestrial Ecosystem Simulator (FATES) and accompanies the paper “Needham, J.F., Chambers, J., Fisher, R., Knox, R., and Koven, C. D., Forest responses to simulated elevated CO2 under alternate hypotheses of size- and age-dependent mortality, 2020, Global Change Biology”. These scripts process FATES outputs from size- and age-dependent mortality simulations which were run to test the effect of different mechanisms of mortality on forest response to elevated CO2 (eCO2). Specifically, these scripts will process single plant functional type (PFT) simulations in which mortality is either a constant background rate, size-dependent or age-dependent. In each case, a simulation with constant woody NPP is compared to a simulation in which woody NPP increases by 25% to simulate the growth response of forests to eCO2. In addition, the data package contains scripts to analyse ensemble simulations with size- and age-dependent mortality and two PFTs, that were run to test the impact of different demographic rates on coexistence and the forest response to eCO2. Finally, the dataset includes scripts for processing simulations testing the sensitivity of results to allometry and to the recruitment scheme.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Advancing Building Energy Modeling with Large Language Models: Exploration and Case Studies

The rapid progression in artificial intelligence has facilitated the emergence of large language models like ChatGPT, offering potential applications extending into specialized engineering modeling, especially physics-based building energy modeling. This paper investigates the innovative integration of large language models with building energy modeling software, focusing specifically on the fusion of ChatGPT with EnergyPlus. A literature review is first conducted to reveal a growing trend of incorporating large language models in engineering modeling, albeit limited research on their application in building energy modeling. We underscore the potential of large language models in addressing building energy modeling challenges and outline potential applications including simulation input generation, simulation output analysis and visualization, conducting error analysis, co-simulation, simulation knowledge extraction and training, and simulation optimization. Three case studies reveal the transformative potential of large language models in automating and optimizing building energy modeling tasks, underscoring the pivotal role of artificial intelligence in advancing sustainable building practices and energy efficiency. The case studies demonstrate that selecting the right large language model techniques is essential to enhance performance and reduce engineering efforts. The findings advocate a multidisciplinary approach in future artificial intelligence research, with implications extending beyond building energy modeling to other specialized engineering modeling.

building energy modeling↗

DOE OSTI2019

Scalable Contour Tree Computation by Data Parallel Peak Pruning

As data sets grow to exascale, automated data analysis and visualization are increasingly important, to intermediate human understanding and to reduce demands on disk storage via in situ analysis. Trends in architecture of high performance computing systems necessitate analysis algorithms to make effective use of combinations of massively multicore and distributed systems. One of the principal analytic tools is the contour tree, which analyses relationships between contours to identify features of more than local importance. Unfortunately, the predominant algorithms for computing the contour tree are explicitly serial, and founded on serial metaphors, which has limited the scalability of this form of analysis. While there is some work on distributed contour tree computation, and separately on hybrid GPU-CPU computation, there is no efficient algorithm with strong formal guarantees on performance allied with fast practical performance. Furthermore, we report the first shared SMP algorithm for fully parallel contour tree computation, with formal guarantees of O(lg V lg t) parallel steps and O(V lg V) work for data with V samples and t contour tree supernodes, and implementations with more than 30× parallel speed up on both CPU using TBB and GPU using Thrust and up 70× speed up compared to the serial sweep and merge algorithm.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2021

Simulated hydrological dynamics and coupled iron redox cycling impact methane production in an Arctic soil: Modeling Archive

This Modeling Archive is in support of an NGEE Arctic publication "Simulated hydrological dynamics and coupled iron redox cycling impact methane production in an Arctic soil" in the Journal of Geophysical Research-Biogeosciences. We simulated biogeochemical cycling in arctic soils using the PFLOTRAN geochemical model combined with measurements from previous NGEE Arctic incubations of polygonal permafrost soils in northern Alaska (Zheng et al., 2018). Simulated iron cycling, carbon dioxide production, and methane production were compared with incubation measurements and the parameterized model was then used to simulate coupled iron and carbon cycling over repeated oxic-anoxic cycles at different levels of carbon substrate availability and pH. The most recent data version (2.0) in the archive incorporates changes to the model and simulations as suggested by reviewers during the manuscript review process. These changes include an updated parameterization of the model; a new set of simulations omitting the iron cycle for direct evaluation of how iron cycle processes affect modeled outcomes; and a set of simulations testing different scenarios of carbon substrate availability in addition to scenarios of initial soil pH. This archive contains simulation code, model output, and analysis code for PFLOTRAN simulations. All scripts are python except the batch script for submitting multiprocessor jobs. Note that the model also requires compiled versions of the Alquimia interface and the NGEE Arctic fork of the PFLOTRAN geochemical simulator (see the README_INSTALL document for basic instructions). The Output directory contains eight data files in netCDF format generated by the model. The Next-Generation Ecosystem Experiments: Arctic (NGEE Arctic), was a 10-year research effort (2012-2022) to reduce uncertainty in Earth System Models by developing a predictive understanding of carbon-rich Arctic ecosystems and feedbacks to climate. NGEE Arctic was supported by the Department of Energy's Office of Biological and Environmental Research. The NGEE Arctic project had two field research sites: 1) located within the Arctic polygonal tundra coastal region on the Barrow Environmental Observatory (BEO) and the North Slope near Utqiagvik (Barrow), Alaska and 2) multiple areas on the discontinuous permafrost region of the Seward Peninsula north of Nome, Alaska. Through observations, experiments, and synthesis with existing datasets, NGEE Arctic provided an enhanced knowledge base for multi-scale modeling and contributed to improved process representation at global pan-Arctic scales within the Department of Energy's Earth system Model (the Energy Exascale Earth System Model, or E3SM), and specifically within the E3SM Land Model component (ELM).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

A Novel Three Phase Oak Ridge DC / AC Converter for Wireless Grid Tied Applications

In this study, a novel three phase oak ridge dc to ac converter is introduced for wireless mobility energy storage (WMES) applications to support the grid demand during peak times. The proposed topology can be used in a bi-directional operation between ac grid and dc terminals of energy storage by accomplishing unity power factor. Inherent merit of the technology can directly merge dc input to the high frequency and 60 Hz grid frequency by superimposing through the wireless coils. Theoretical and simulation results are validated by the simulation analysis for 20 kW output power. The functionality of the proposed three phase system is established by using 6 inches air gap between the couplers with the input of 675 V DC and output of 277 V AC, RMS . The system overall design analysis is demonstrated for simulation analysis and simulation results are presented achieving 3% current total harmonic distortion (THD) and 0.99 power factor (PF) at full load 20 kW wireless power transfer.

Asa, Erdem↗

DOE OSTI2022

Sim-Situ: A Framework for the Faithful Simulation of in situ Processing

The amount of data generated by numerical simulations in various scientific domains led to a fundamental redesign of how the analysis and visualization of simulation outputs are performed. The throughput and capacity of storage subsystems have not evolved as fast as the computing power in extreme-scale supercomputers, making the classical post-hoc approach highly inefficient. In situ processing has then emerged as a solution in which simulation and data analysis/visualization are intertwined for better performance and greater interactivity.Determining the best allocation, i.e., how many resources to allocate to simulation and analysis respectively, mapping, i.e., where and at which frequency to run the analysis/visualization, and data transfer mode is a complex task whose performance assessment is crucial to the efficient execution of in situ processing. However, such a performance evaluation of different strategies usually relies either on directly running them on the targeted execution environments, which can rapidly become extremely time- and resource-consuming, or on resorting to simplified models of the components of an in situ application, which can lack of realism. In both cases, the validity of the performance evaluation is limited.In this paper, we present Sim-Situ, a simulation-based framework for the faithful performance evaluation of in situ processing strategies. We designed Sim-Situ to reflect the typical features of in situ processing systems. Thanks to its modular design, Sim-situ has the necessary flexibility to easily and faithfully evaluate the behavior and performance of various allocation, mapping, and data transfer strategies. We illustrate the simulation capabilities of Sim-Situ on a Molecular Dynamics use case. We study the impact of different strategies on performance and show how users can leverage Sim-Situ to determine interesting tradeoffs when adding analysis/visualization components to their application.

Honoré, Valentin↗

DOE OSTI2019

The Effect of Data Transformations on Scalar Field Topological Analysis of High-Order FEM Solutions

High-order finite element methods (HO-FEM) are gaining popularity in the simulation community due to their success in solving complex flow dynamics. There is an increasing need to analyze the data produced as output by these simulations. Simultaneously, topological analysis tools are emerging as powerful methods for investigating simulation data. Yet, most of the current approaches to topological analysis have had limited application to HO-FEM simulation data for two reasons. First, the current topological tools are designed for linear data (polynomial degree one), but the polynomial degree of the data output by these simulations is typically higher (routinely up to polynomial degree six). Second, the simulation data and derived quantities of the simulation data have discontinuities at element boundaries, and these discontinuities do not match the input requirements for the topological tools. One solution to both issues is to transform the high-order data to achieve low-order, continuous inputs for topological analysis. Nevertheless, there has been little work evaluating the possible transformation choices and their downstream effect on the topological analysis. We perform an empirical study to evaluate two commonly used data transformation methodologies along with the recently introduced L-SIAC filter for processing high-order simulation data. Our findings indicate diverse behaviors are possible. We offer some guidance about how best to consider a pipeline of topological analysis of HO-FEM simulations with the currently available implementations of topological analysis.

97 MATHEMATICS AND COMPUTING↗

DOE OSTI2024

Lambda-PFLOTRAN 1.0: a workflow for incorporating organic matter chemistry informed by ultra high resolution mass spectrometry into biogeochemical modeling

Abstract. Organic matter (OM) composition plays a central role in microbial respiration of dissolved organic matter and subsequent biogeochemical reactions. Here, a direct connection of organic matter chemistry and thermodynamics to reactive transport simulators has been achieved through the newly developed Lambda-PFLOTRAN workflow tool that succinctly incorporates carbon chemistry data generated from Fourier transform ion cyclotron resonance mass spectrometry (FTICR-MS) into reaction networks to simulate organic matter degradation and the resulting biogeochemistry. Lambda-PFLOTRAN is a Python-based workflow, executed through a Jupyter notebook interface, that digests raw FTICR-MS data, develops a representative reaction network based on substrate-explicit thermodynamic modeling (also termed lambda modeling due to its key thermodynamic parameter λ used therein), and completes a biogeochemical simulation with the open source, reactive flow and transport code PFLOTRAN. The workflow consists of the following five steps: configuration, thermodynamic (lambda) analysis, sensitivity analysis, parameter estimation, and simulation output and visualization. Two test cases are provided to demonstrate the functionality of the Lambda-PFLOTRAN workflow. The first test case uses laboratory incubation data of temporal oxygen depletion to fit lambda parameters (i.e., maximum utilization rate and microbial carrying capacity). A slightly more complex second test case fits multiple lambda formulation and soil organic matter release parameters to temporal greenhouse gas generation measured during a soil incubation. Overall, the Lambda-PFLOTRAN workflow facilitates upscaling by using molecular-scale characterization to inform biogeochemical processes occurring at larger scales.

58 GEOSCIENCES↗

DOE OSTI2019

Nuclear recoil scintillation linearity of a high pressure 4 He gas detector

We investigate scintillation linearity of a commercial high pressure 4 He gas detector using monoenergetic 2.8 MeV neutrons from a deuterium-deuterium fusion neutron generator. The scintillation response of the detector was measured for a range of recoil energies between 83 keV and 626 keV by tagging neutrons scattering into fixed angles with a far-side organic scintillator detector. Detailed Monte Carlo simulations were compared to experimental data to determine the linearity of the detector response by comparing the scaling of the energy deposits in the simulations to the detector output. In this analysis, a linear scintillation response corresponds to a consistent value for the scaling factor between simulated energy deposits and experimental data for several different scattering angles. Here we demonstrate that the detector can be used to detect fast neutron interactions down to 83 keV recoil energies and can be used to characterize low-energy neutron sources, one of its potential applications.

47 OTHER INSTRUMENTATION↗

DOE OSTI2018

Frequency–wavenumber spectral analysis of spatio-temporal flows

We propose a fully spatio-temporal approach for identifying spatially varying modes of oscillation in fluid dynamics simulation output by means of multitaper frequency–wavenumber spectral analysis. One-dimensional spectrum estimation has proven to be a valuable tool in the analysis of turbulence data applied spatially to determine the rate of energy transport between spatial scales, or temporally to determine frequencies of oscillatory flows. It also allows for the quantitative comparison of flow characteristics between two scenarios using a standard basis. It has the limitation, however, that it neglects coupling between spatial and temporal structures. Two-dimensional frequency–wavenumber spectral analysis allows one to decompose waveforms into standing or travelling variety. The extended higher-dimensional multitaper method proposed here is shown to have improved statistical properties over conventional non-parametric spectral estimators, and is accompanied by confidence intervals which estimate their uncertainty. Multitaper frequency–wavenumber analysis is applied to a canonical benchmark problem, namely, a direct numerical simulation of von Kármán vortex shedding off a square wall-mounted cylinder with two inflow scenarios with matching momentum-thickness Reynolds numbers $Re_{\unicode[STIX]{x1D703}}\approx 1000$ at the obstacle. Frequency–wavenumber analysis of a two-dimensional section of these data reveals that although both the laminar and turbulent inflow scenarios show a turbulent $-5/3$ cascade in wavenumber ( $\unicode[STIX]{x1D708}$ ) and frequency ( $f$ ), the flow characteristics differ in that there is a significantly more prominent discrete harmonic oscillation near $(f,\unicode[STIX]{x1D708})=(0.2,0.21)$ in wavenumber and frequency in the laminar inflow scenario than the turbulent scenario. This frequency–wavenumber pair corresponds to a travelling wave with velocity near one near the centre path of the vortex street.

Geoga, Christopher J. (ORCID:0000000250604799)↗

DOE OSTI2022

Hybrid Analysis of Fusion Data for Online Understanding of Complex Science on Extreme Scale Computers

The current practice for fusion scientists running first principle simulations on high performance computing plat-forms is to either run their simulations and output their data for post-hoc analysis, or to place in situ analytics into their code. In this paper we examine a complex workflow using XGC fusions simulation run on the Oak Ridge Leadership Computing Facility's supercomputer Summit, which also involve three anal-yses as part of the results necessary for scientific discovery. We discuss the challenges faced when implementing these algorithms and present an original hybrid staging technique to help enable the physicists to make discoveries during the execution of the simulation. By creating this infrastructure, we can examine complicated physics results, which may not have been possible without the infrastructure. For example, our work enables the online visualization of turbulent homoclinic tangle around the magnetic X-point, breaking the last confinement surface. This visualization could help fusion scientists to better understand and improve the turbulence spread of plasma exhaust heat, which is crucial toward realizing plasmas beyond the currently accessible physics regimes of present-day tokamak reactors. The physics of turbulent homoclinic tangle will be reported in a future physics publication, by utilizing the original online analysis/visualization framework presented in this paper.

Suchyta, Eric↗

DOE OSTI2019

Automated Multiscale Approach To Predict Self-Diffusion from a Potential Energy Field

For large-scale screening studies there is a need to estimate the diffusion of gas molecules in nanoporous materials more efficiently than (brute force) molecular dynamics. In particular for systems with low diffusion coefficients molecular dynamics can be prohibitively expensive. An alternative is to compute the hopping rates between adsorption sites using transition state theory. For large-scale screening this requires the automatic detection of the transition states between the adsorption sites along the different diffusion paths. Here an algorithm is presented that analyzes energy grids for the moving particles. It detects the energies at which diffusion paths are formed, together with their directions. This allows for easy identification of nondiffusive systems. For diffusive systems, it partitions the grid coordinates assigned to energy basins and transitions states, permitting a transition state theory based analysis of the diffusion. We test our method on CH 4 diffusion in zeolites, using a standard kinetic Monte Carlo simulation based on the output of our grid analysis. We find that it is accurate, fast, and rigorous without limitations to the geometries of the diffusion tunnels or transition states.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

DOE OSTI2020

Leaf-scale carbon assimilation simulated by the multi-assumption architecture & testbed for process sensitivity analysis

Raw and processed output from the Multi-Assumption Architecture & Testbed (MAAT, https://github.com/walkeranthonyp/MAAT, tag: v1.2.1_walker2020; Walker et al., 2018). The dataset contains leaf-scale carbon assimilation data from three MAAT simulations and their post-processing and plotting scripts. Simulation 1, labelled "FvC_4proc_proc," is a four-process, process sensitivity analysis (Dai et al., 2017) of carbon assimilation based on the Farquhar et al. (1980) photosynthesis model, and its variant proposed by Collatz et al. (1991). Simulation 2, labelled "FvC_4proc_salt," is a 14 parameter sensitivity analysis (Saltelli et al., 2010) of carbon assimilation based on the Farquhar and Collatz photosynthesis models. Simulation 3, labelled "FvC," is a factorial combination of the alternative process representations and parameter values presented in those original papers across a factorial combination of incident photosynthetically active radiation (50-2000 µmol m-2 s-1, in increments of 50) and atmospheric CO2 concentration (50-1500 µmol m-2 s-1, in increments of 50). Additional scripts/functions for post-processing and plotting are part of the MAAT repository. These data were generated to evaluate and compare the Farquhar and Collatz models of leaf-scale photosynthesis across a range of CO2 and incident light conditions. Analysis of results can be found in Walker et al. (2020). This dataset is comprised of R scripts to process data and produce figures; .RDS files, a binary format specific to R and read with the 'readRDS' function, to store raw MAAT output; R and bash scripts (.bs) that help to run a MAAT simulation, .XML files that are output from MAAT describing a run, and .csv files which contain the calculated sensitivity indexes published in Walker et al. (2020).

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2018

WebGIobe - A cloud-based geospatial analysis framework for interacting with climate data

While climate models have evolved over time to produce high fidelity and high resolution climate forecasts, visualization and analysis of the output of the model simulations has been limited, typically constrained to single dimensional charts for visualization and basic aggregate statistics for analytics. Same is true for the large troves of observational data available from meteorological stations all over the world. For richer understanding of climate and the impact of climate change, one needs computational tools that allow researchers, policymakers, and general public, to interact with the climate data. In this paper, we describe, webGlobe, a browser based GIS framework for interacting with climate data, and other datasets available in similar format. webGlobe is a unique resource that allows unprecedented access to climate data through a browser. The framework also allows for deploying machine learning based analytical applications on the climate data without putting computational burden on the client. Instead, webGlobe uses a client-server framework, where the server, deployed on a cloud infrastructure, allows for dynamic allocation of resources for running compute-intensive applications. The capabilities of the framework will be discussed in context of a use case: identifying extreme events from real and simulated climate data using a Gaussian process based change detection algorithm.

Sharma, Arun↗

DOE OSTI2023

CERESMIP: a climate modeling protocol to investigate recent trends in the Earth's Energy Imbalance

The Clouds and the Earth's Radiant Energy System (CERES) project has now produced over two decades of observed data on the Earth's Energy Imbalance (EEI) and has revealed substantive trends in both the reflected shortwave and outgoing longwave top-of-atmosphere radiation components. Available climate model simulations suggest that these trends are incompatible with purely internal variability, but that the full magnitude and breakdown of the trends are outside of the model ranges. Unfortunately, the Coupled Model Intercomparison Project (Phase 6) (CMIP6) protocol only uses observed forcings to 2014 (and Shared Socioeconomic Pathways (SSP) projections thereafter), and furthermore, many of the ‘observed' drivers have been updated substantially since the CMIP6 inputs were defined. Most notably, the sea surface temperature (SST) estimates have been revised and now show up to 50% greater trends since 1979, particularly in the southern hemisphere. Additionally, estimates of short-lived aerosol and gas-phase emissions have been substantially updated. These revisions will likely have material impacts on the model-simulated EEI. We therefore propose a new, relatively low-cost, model intercomparison, CERESMIP, that would target the CERES period (2000-present), with updated forcings to at least the end of 2021. The focus will be on atmosphere-only simulations, using updated SST, forcings and emissions from 1990 to 2021. The key metrics of interest will be the EEI and atmospheric feedbacks, and so the analysis will benefit from output from satellite cloud observation simulators. The Tier 1 request would consist only of an ensemble of AMIP-style simulations, while the Tier 2 request would encompass uncertainties in the applied forcing, atmospheric composition, single and all-but-one forcing responses. We present some preliminary results and invite participation from a wide group of models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

Offshore Wind to Hydrogen - Modeling, Analysis, Testing and International Collaboration Work

This project explores electrolytic hydrogen production from an offshore wind turbine by: Modeling: Simulate an offshore wind turbine and generate power output profiles; Analysis: Analyze offshore conditions and determine operational modes of the stack; Testing: Perform hardware testing to evaluate dynamic characteristics; and International Collaboration Work: Share learnings and publish. Potential Outcomes: Accelerate development of an integrated, in-turbine offshore wind hydrogen system; and Support two DOE Energy Earthshots - Hydrogen and Floating Offshore Wind.

electrolyzer↗

DOE OSTI2026

Reservoir Characterization and Techno-Economic Analysis of Enhanced Geothermal and Closed-Loop Systems in the Wattenberg Field of the Denver-Julesburg Basin, Colorado

This report provides details of reservoir characterization and techno-economic analysis for enhanced geothermal systems and closed-loop geothermal systems in the Denver-Julesburg Basin Wattenberg area. The analysis contributes to the Geothermal Limitless Approach to Drilling Efficiencies (GLADE) project, a multi-institutional research initiative focused on advancing geothermal energy development by reducing drilling costs and improving the rate of penetration. The GLADE project brings together national laboratories, academic institutions, and industry partners, including the U.S. Department of Energy's Geothermal Technologies Office, Occidental Petroleum, the National Laboratory of the Rockies (NLR), Los Alamos National Laboratory, Colorado School of Mines, Louisiana State University, Texas A&M University, and several drilling technology companies. As part of this effort, NLR developed and applied slender-body theory modeling tools and the GEOPHIRES simulator to support techno-economic analysis. The slender-body theory wellbore simulator evaluated thermal performance in U-loop, Eavor-type multilateral, and enhanced geothermal system well configurations. Results indicated that an optimized single U-loop design delivers an outlet temperature of 168.8 degrees Celsius,stabilizing at a final outlet temperature of 135.3 degrees Celsius. Heat production also improved significantly, with an average thermal output of 16.9 MWth and a final thermal output of 11.0 MWth. These results provided critical baseline data for selecting optimized systems for techno-economic analysis. Building on these outputs, NLR applied the GEOPHIRES techno-economic simulator to estimate the levelized cost of electricity for both the Eavor multilateral and enhanced geothermal systems. The sensitivity analysis showed that drilling costs exert a particularly strong impact on the levelized cost of electricity of multilateral systems. Therefore, advances in drilling technology and improved drilling rates could yield significant gains in the economic performance of these systems. In this context, the GLADE project directly supports the U.S. Department of Energy's mission to reduce the cost of geothermal energy and accelerate the deployment of next-generation geothermal technologies.

15 GEOTHERMAL ENERGY↗

DOE OSTI2025

The Aerosol Model Benchmarking Repository: A toolkit for model intercomparison

The Aerosol Model Benchmarking Repository and Standards (AMBRS) project was initiated to provide tools and to establish community standards for benchmarking aerosol models. This report describes a set of open-source tools for building, running, and analyzing aerosol box model simulations in a standardized framework. The framework consists of three core components: AMBuilder, a CMake-based build system that compiles supported models consistently; AMBRS, a Python module that defines unified numerical experiments and executes them with aligned inputs; and PyParticle, an aerosol analysis package that standardizes output, computes diagnostics, and visualizes simulation results. Together, these tools enable reproducible intercomparison of aerosol schemes and support process-level evaluation of how model simplifications affect predictions of size distributions, cloud condensation nuclei activity, and other relevant properties relevant for the Earth-Energy system. Beyond its role in benchmarking, AMBRS provides a platform for studying aerosol processes across scales and can be used to generate training data for AI/ML applications in support of a broader hierarchical aerosol modeling strategy.

54 ENVIRONMENTAL SCIENCES↗