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At least 19 records

Filling the Gaps: A Bayesian Mixture Model for Imputing Missing Soil Water Content Data

ABSTRACT Soil water content (SWC) data are central to evaluating how soil moisture varies over time and space and influences critical plant and ecosystem functions, especially in water‐limited drylands. However, sensors that record SWC at high frequencies often malfunction, leading to incomplete timeseries and limiting our understanding of dryland ecosystem dynamics. We developed an analytical approach to impute missing SWC data, which we tested at six eddy flux tower sites along an elevation gradient in the southwestern United States. We impute missing data as a mixture of linearly interpolated SWC between the observed endpoints of a missing data gap and SWC simulated by an ecosystem water balance model (SOILWAT2). Within a Bayesian framework, we allowed the relative utility (mixture weight) of each component (linearly interpolated vs. SOILWAT2) to vary by depth, site and gap characteristics. We explored “fixed” weights versus “dynamic” weights that vary as a function of cumulative precipitation, average temperature, and time since the start of the gap. Both models estimated missing SWC data well ( R 2 = 0.70–0.88 vs. 0.75–0.91 for fixed vs. dynamic weights, respectively), but the utility of linearly interpolated versus SOILWAT2 values depended on site and depth. SOILWAT2 was more useful for more arid sites, shallower depths, longer and warmer gaps and gaps that received greater precipitation. Overall, the mixture model reliably gap‐fills SWC, while lending insight into processes governing SWC dynamics. This approach to impute missing data could be adapted to accommodate more than two mixture components and other types of environmental timeseries.

Ogle, Kiona [School of Informatics, Computing, and↗

Topographical shifts in fine root lifespan in a mixed, mesic temperate forest

Root lifespan, often is estimated in landscape- and ecosystem-level carbon models using linear approximations. In water manipulation experiments, fine root lifespan can vary with soil water content. Soil water content is generally structured by complex topography, which is largely unaccounted for in landscape- and ecosystem-scale carbon models. Topography governs the range of soil water content experienced by roots which may impact their lifespan. We hypothesized that root lifespan varied nonlinearly across a temperate, mesic, forested catchment due to differences in soil water content associated with topographic position. We expected regions of the landscape that were too wet or too dry would have soils that were not optimal for roots and thus result in shorter root lifespans. Specifically, we hypothesized that root lifespan would be longest in areas that consistently had soil water content in the middle of the soil water content spectrum, while in soils at either very low or very high soil water content, root lifespan would be relatively short. We tested this hypothesis by collecting and analyzing two years of minirhizotron and soil moisture data in plots widely distributed in the Shale Hills catchment of the Susquehanna-Shale Hills Critical Zone Observatory in Pennsylvania. We found that fine root lifespans were longer in traditionally wetter topographic regions, but detected no short term (biweekly) effect of soil moisture on root lifespan. Additionally, depth in soil, soil series, slope face orientation, and season of birth strongly affected root lifespans across the catchment. In contrast, lifespan was unaffected by root diameter or mycorrhizal association. Failure to account for these variables could result in erroneous estimates of fine root lifespan and, consequentially, carbon flux in temperate forested regions.

54 ENVIRONMENTAL SCIENCES↗

Microwave remote sensing of soil water content

Microwave remote sensing of soils to determine water content was considered. A layered water balance model was developed for determining soil water content in the upper zone (top 30 cm), while soil moisture at greater depths and near the surface during the diurnal cycle was studied using experimental measurements. Soil temperature was investigated by means of a simulation model. Based on both models, moisture and temperature profiles of a hypothetical soil were generated and used to compute microwave soil parameters for a clear summer day. The results suggest that, (1) soil moisture in the upper zone can be predicted on a daily basis for 1 cm depth increments, (2) soil temperature presents no problem if surface temperature can be measured with infrared radiometers, and (3) the microwave response of a bare soil is determined primarily by the moisture at and near the surface. An algorithm is proposed for monitoring large areas which combines the water balance and microwave methods.

Cihlar, J.↗

Root water uptake of biofuel crops revealed by coupled electrical resistivity and soil water content measurements

Abstract Biofuel crops, including annuals such as maize ( Zea mays L.), soybean [ Glycine max (L.) Merr.], and canola ( Brassica napus L.), as well as high‐biomass perennial grasses such as miscanthus ( Miscanthus × giganteus J.M. Greef & Deuter ex Hodkinson & Renvoiz), are candidates for sustainable alternative energy sources. However, large‐scale conversion of croplands to perennial biofuel crops could have substantial impacts on regional water, nutrient, and C cycles due to the longer growing seasons and differences in rooting systems compared with most annual crops. However, due to the limited tools available to nondestructively study the spatiotemporal patterns of root water uptake in situ at field scales, these differences in crop water use are not well known. Geophysical imaging tools such as electrical resistivity (ER) reveal changes in water content in the soil profile. In this study, we demonstrate the use of a novel coupled hydrogeophysical approach with both time domain reflectometry soil water content and ER measurements to compare root water uptake and soil properties of an annual crop rotation with the perennial grass miscanthus, across three growing seasons (2009–2011) in southwest Michigan, USA. We estimated maximum root depths to be between 1.2 and 2.2 m, with the vertical distribution of roots being notably deeper in 2009 relative to 2010 and 2011, likely due to the drought conditions during that first year. Modeled cumulative ET of both crops was underestimated (2–34%) relative to estimates obtained from soil water drawdown in prior studies but was found to be greater in the perennial grass than the annual crops, despite shallower modeled rooting depths in 2010 and 2011.

Kuhl, Alexandria S.↗

Observed and Imputed Volumetric Soil Water Content Timeseries for the New Mexico Elevation Gradient

Reliable soil water content (SWC) data are essential for understanding dryland ecosystem dynamics, but high-frequency SWC sensors often fail, creating gaps in critical datasets. To address this, we developed a Bayesian mixture model that imputes missing SWC using both linear interpolation and an ecosystem water balance model (SOILWAT2), tested across six AmeriFlux eddy covariance tower sites in the New Mexico Elevation Gradient, demonstrating its effectiveness in reconstructing SWC patterns while providing insights into the factors driving SWC variability. Daily volumetric soil water content (SWC) data are provided as csv-formatted spreadsheets for the six AmeriFlux sites (US-Seg, US-Ses, US-Wjs, US-Mpi, US-Vcp, and US-Vcs). For each site there is an observed SWC file (site_SWC_gapfill.csv) and a file that contains imputed SWC (imputed_SWC_site.csv). The observed SWC files contain temperature corrected sensor values, tower precipitation data, as well as outputs from SOILWAT2 simulations that were used to impute SWC. The imputed files contain the original observed SWC values and the imputed missing SWC values. When SWC was missing from the original data, the missing value was imputed based on the Bayesian imputation mixture model. The posterior mean of all imputed values is reported as "mean_X". When the observed SWC was NOT missing, mean_X = observed SWC value (original data). The standard deviation, 2.5th percentile and the 97.5th percentile for the imputed values are also reported in the imputed files. There are readme text files for each file type explaining the contents of each column.

54 ENVIRONMENTAL SCIENCES↗

Soil water content and evaporation determined by thermal parameters obtained from ground-based and remote measurements

Soil water contents from both smooth and rough bare soil were estimated from remotely sensed surface soil and air temperatures. An inverse relationship between two thermal parameters and gravimetric soil water content was found for Avondale loam when its water content was between air-dry and field capacity. These parameters, daily maximum minus minimum surface soil temperature and daily maximum soil minus air temperature, appear to describe the relationship reasonably well. These two parameters also describe relative soil water evaporation (actual/potential). Surface soil temperatures showed good agreement among three measurement techniques: in situ thermocouples, a ground-based infrared radiation thermometer, and the thermal infrared band of an airborne multispectral scanner.

Reginato, R. J.↗

An Evaluation of Total Solar Reflectance and Spectral Band Ratioing Techniques for Estimating Soil Water Content

For several days in March of 1975, reflected solar radiation measurements were obtained from smooth and rough surfaces of wet, drying, and continually dry Avondale loam at Phoenix, Arizona, with pyranometers located 50 cm above the ground surface and a multispectral scanner flown at a 300-m height. The simple summation of the different band radiances measured by the multispectral scanner proved equally as good as the pyranometer data for estimating surface soil water content if the multispectral scanner data were standardized with respect to the intensity of incoming solar radiation or the reflected radiance from a reference surface, such as the continually dry soil. Without this means of standardization, multispectral scanner data are most useful in a spectral band ratioing context. Our results indicated that, for the bands used, no significant information on soil water content could be obtained by band ratioing. Thus the variability in soil water content should insignificantly affect soil-type discrimination based on identification of type-specific spectral signatures. Therefore remote sensing, conducted in the 0.4- to 1.0-micron wavelength region of the solar spectrum, would seem to be much More suited to identifying crop and soil types than to estimating of soil water content.

Reginato, R. J.↗

Changes in soil water content and lateral flow exert large effects on soil thermal dynamics across Alaskan landscapes

Both lateral surface and subsurface water flow affect soil moisture dynamics, yet most land surface models only solve subsurface water movement vertically. Here, we use a 3D ecosystem model that considers both land surface and subsurface hydrologic processes to simulate soil moisture, which is then used to drive a 1-D vertical soil thermal model to simulate the soil moisture effects on soil thermal dynamics in central Alaska. Our coupled model improves soil temperature (ST) estimates by 43.5% in comparison with observational data. Soil moisture has little effect on ST during the wet season (-1.5%) and a substantial influence during the dry season (60%). Spatially, water lateral flow has significant impacts on both soil moisture and ST, causing model estimates for thawed areas in the transition season to increase by ~10% in the study area. Our results highlight the importance of considering dynamical soil moisture, as well as lateral flow effects, on soil thermal dynamics in permafrost regions.

54 ENVIRONMENTAL SCIENCES↗

Initialization of soil-water content in regional-scale atmospheric prediction models

The purpose of this study is to demonstrate the feasibility of determining the soil-water content fields required as initial conditions for land surface components within atmospheric prediction models. This is done using a model of the hydrologic balance and conventional meteorological observations, land cover, and soils information. A discussion is presented of the subgrid-scale effects, the integration time, and the choice of vegetation type on the soil-water content patterns. Finally, comparisons are made between two The Pennsylvania State University/National Center for Atmospheric Research mesoscale model simulations, one using climatological fields and the other one using the soil-moisture fields produced by this new method.

Smith, Christopher B.↗

Field-Scale Lysimeter Studies of Glass and Cementitious Waste Forms at the Hanford Site - 20392

The Hanford site Integrated Disposal Facility (IDF) will receive waste forms from vitrification activities at the Hanford Waste Treatment and Immobilization Plant (WTP). The waste form inventory to be disposed of at the IDF will consist of vitrified low-activity waste (LAW) in glass forms and solidified (or encapsulated) secondary wastes in cementitious forms. The IDF is a near-surface burial facility located near Hanford's Waste Treatment and Immobilization Plant in the 200 East Area of the site's Central Plateau. An extensive set of laboratory experimental data has been collected to support IDF performance assessment calculations of the eventual degradation of waste forms and mobility of contaminants. This paper describes the start of a field experiment to generate waste-form performance data on a larger scale (tens of centimeters), over a longer duration (five years or more), and under field conditions representative of the IDF. Results from this study are expected to improve model descriptions of contaminant mobility, reduce uncertainties about the representativeness of laboratory results in the IDF performance assessment, improve stakeholder confidence in the safe disposal of treated waste at the IDF, and facilitate the adoption of informed facility designs with the potential to reduce operational costs. A lysimeter test facility near Hanford's 200 West Area has been repurposed to carry out long-term assessments of waste forms buried in sediments excavated from the IDF. The waste forms are buried in large drainage lysimeters, open caissons that are two meters in diameter and three meters deep. Waste forms are buried in up to six locations in each lysimeter. Samplers collect pore water and drainage water beneath the waste forms and air from the pore space adjacent to waste forms. Sensors measure temperature, soil water content, soil water tension, and drainage flux. One lysimeter containing cementitious waste forms and one containing glass waste forms have been completed, along with a control lysimeter (without waste forms). The cementitious waste forms are Cast Stone grout formulations using a liquid secondary waste simulant and a generic Hanford high-salt simulant, as well as a hydrated lime-based grout formulation using a liquid secondary waste simulant. Technetium-99 and iodine-127 were added as tracers to monitor contaminant mobility. Glass waste forms were fabricated in two formulations (LAWA44 and ORLEC28), with rhenium and molybdenum tracers to monitor waste form degradation. The predicted performance of the waste forms in the lysimeters was modeled prior to installation to determine waste form size, tracer concentration/activity, and locations of sensors and samplers. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Soil Water Content Effects on Net Ecosystem CO2 Exchange and Actual Evapotranspiration in a Mediterranean Semiarid Savanna of Central Chile

Biosphere-atmosphere water and carbon fluxes depend on ecosystem structure, and their magnitudes and seasonal behavior are driven by environmental and biological factors. We studied the seasonal behavior of net ecosystem CO2 exchange (NEE), Gross Primary Productivity (GPP), Ecosystem Respiration (RE), and actual evapotranspiration (ETa) obtained by eddy covariance measurements during two years in a Mediterranean Acacia savanna ecosystem (Acacia caven) in Central Chile. The annual carbon balance was −53 g C/sq. m in 2011 and −111 g C/sq. m in 2012, showing that the ecosystem acts as a net sink of CO2, notwithstanding water limitations on photosynthesis observed in this particularly dry period. Total annual ETa was of 128 mm in 2011 and 139 mm in 2012. Both NEE and ETa exhibited strong seasonality with peak values recorded in the winter season (July to September), as a result of ecosystem phenology, soil water content and rainfall occurrence. Consequently, the maximum carbon assimilation rate occurred in wintertime. Results show that soil water content is a major driver of GPP and RE, defining their seasonal patterns and the annual carbon assimilation capacity of the ecosystem, and also modulating the effect that solar radiation and air temperature have on NEE components at shorter time scales.

Meza, Francisco J.↗

Field Evaluation of Portable Soil Water Content Sensors in a Sandy Loam

Ground observations are critical in the validation of soil water content (SWC) estimates from both satellites and land surface models. Portable SWC sensors provide useful information to determine the amount of SWC in the topsoil layer for various applications; however, these probes are not accurate without site‐specific correction. In the present study, we examined and compared six different types of portable electromagnetic (EM) SWC sensors, including multiple sensors made by the same manufacturers, for a total of 16 EM‐based SWC probes equipped with portable data loggers. All SWC probes met the target accuracy after onsite correction—the RMSD was <0.025 m(exp 3) m(exp -3). Using the two‐sample t-tests, we observed that SWC data obtained from similar electrode lengths and from different manufacturers showed similar distributions over time with the same mean. Furthermore, using the maximize R method to combine SWC data from two different types of sensors increased the accuracy of the results. When datasets from two different types of sensors were combined, the Pearson's correlation coefficient (R value) and RMSD values were improved. The average R value improved from .930 to .945, and the RMSD decreased from 0.036 m(exp 3) m(exp -3) to 0.018 m(exp 3) m(exp −3). These results indicate that, along with site‐specific correction, synergetic use of multiple manufacturers’ EM‐based SWC probes can improve the R value and reduce systematic bias.

soil moisture data↗

Relation between L-band soil emittance and soil water content

An experimental relation between soil emittance (E) at L-band and soil surface moisture content (M) is compared with a theoretical one. The latter depends on the soil dielectric constant, which is a function of both soil moisture content and of soil texture. It appears that a difference of 10 percent in the surface clay content causes a change in the estimate of M on the order of 0.02 cu m/cu m. This is based on calculations with a model that simulates the flow of water and energy, in combination with a radiative transfer model. It is concluded that an experimental determination of the E-M relation for each soil type is not required, and that a rough estimate of the soil texture will lead to a sufficiently accurate estimate of soil moisture from a general, theoretical relationship obtained by numerical simulation.

Stroosnijder, L.↗

Real-Time, Simultaneous Soil Water Content and Meteorological Data Measurement to Support TRACER over Harris County, Texas (Field Campaign Report: Part I)

The main purpose of this project was to provide ground-truth and satellite-based soil water content data in the Houston, Texas, area to support the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility’s 2022 field campaign, the Tracking Aerosol Convection Interactions ExpeRiment (TRACER). This involved installing four soil monitoring stations at different locations in the Houston area, two of which were part of the ARM facility and two were ancillary. The two stations associated directly with ARM were installed alongside other facilities managed and maintained by the TRACER research team during the intensive operational period (IOP), one located at the La Porte, Texas airport and the other near Guy, Texas. Data from these stations were assimilated with similar data collected by the Harris County Flood Control District (HCFCD) to improve the spatial coverage of the real-time monitoring network. The ground-truth data were compared to the satellite-based (National Aeronautics and Space Administration [NASA]’s Soil Moisture Active Passive [SMAP] mission) data in the TRACER area of interest, and analyzed further to nowcast gridded data over the Houston area. The nowcasted, gridded data product was made available to TRACER researchers for use in climate and land-atmosphere interaction modeling that can help understand formation and persistence of convective storms in dense urban areas, and predict possible environmental events such as floods.

54 ENVIRONMENTAL SCIENCES↗

Real-Time, Simultaneous Soil Water Content and Meteorological Data Measurement to Support TRACER over Harris County, Texas Field Campaign Report: Part II

The main purpose of this project was to provide ground-truth and satellite-based soil water content data in the Houston, Texas, area to support the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility’s 2022 field campaign, the Tracking Aerosol Convection Interactions ExpeRiment (TRACER). This involved installing four soil monitoring stations at different locations in the Houston area, two of which were part of the ARM facility and two were ancillary. The two stations associated directly with ARM were installed alongside other facilities managed and maintained by the TRACER research team during the intensive operational period (IOP), one located at the La Porte, Texas airport and the other located near Guy, Texas. Data from these stations were assimilated with similar data collected by the Harris County Flood Control District (HCFCD) to improve the spatial coverage of the real-time monitoring network. The ground-truth data were compared to the satellite-based (National Aeronautics and Space Administration [NASA]’s Soil Moisture Active Passive [SMAP] mission) data in the TRACER area of interest, and analyzed further to nowcast gridded data over the Houston area. The nowcasted, gridded data product was made available to TRACER researchers for use in climate and land-atmosphere interaction modeling that can help understand formation and persistence of convective storms in dense urban areas, and predict possible environmental events such as floods.

54 ENVIRONMENTAL SCIENCES↗

Thermal remote sensing of surface soil water content with partial vegetation cover for incorporation into climate models

This study outlines a method for the estimation of regional patterns of surface moisture availability (M(sub 0)) and fractional vegetation (Fr) in the presence of spatially variable vegetation cover. The method requires relating variations in satellite-derived (NOAA, Advanced Very High Resolution Radiometer (AVHRR)) surface radiant temperature to a vegetation index (computed from satellite visible and near-infrared data) while coupling this association to an inverse modeling scheme. More than merely furnishing surface soil moisture values, the method constitues a new conceptual and practical approach for combining thermal infrared and vegetation index measurements for incorporating the derived values of M(sub 0) into hydrologic and atmospheric prediction models. Application of the technique is demonstrated for a region in and around the city of Newcastle upon Tyne situated in the northeast of England. A regional estimate of M(sub 0) is derived and is probabbly good for fractional vegetation cover up to 80% before errors in the estimated soil water content become unacceptably large. Moreover, a normalization scheme is suggested from which a nomogram, `universal triangle,' is constructed and is seen to fit the observed data well. The universal triangle also simplifies the inclusion of remotely derived M(sub 0) in hydrology and meteorological models and is perhaps a practicable step toward integrating derived data from satellite measurements in weather forecasting.

Gillies, Robert R.↗

Soil water content, matric potential, carbon dioxide and oxygen concentrations, Oct 2018-Dec 2021, Slate River Floodplain, Crested Butte, Colorado

This data package includes a time series of soil sensor data (temperature, water content, bulk electrical conductivity, porewater dissolved oxygen and porewater dissolved carbon dioxide) in a vertical profile from the Slate River floodplain outside Crested Butte, Colorado, a focus field site for the SLAC Floodplain Hydro-Biogeochemistry SFA. The data was generated as part of the work targeting the overarching research question for the SLAC SFA: How do ubiquitous subsurface interfaces mediate molecular-scale biogeochemical processes and groundwater quality in floodplains and watersheds? The package includes: (1) soil temperature, volumetric water content and electrical conductivity at 40, 60 and 82.5 cm depth; (2) soil matric potential at 40, 60, 79 and 100 cm depth; (3) soil CO2 concentrations at 40, 60 and 82.5 cm depth; and (4) soil oxygen concentrations at 60, 82.5, 100, 135, 170 and 182 cm depth. Both the carbon dioxide and oxygen sensors are optical sensors that can measure the partial pressure of oxygen in both saturated and unsaturated conditions. Unfortunately, soil CO2 in the profile is unexpectedly high and above the sensor calibration range (0-25,000 ppm). In addition, soil CO2 sensors failed within a year of deployment, so we only report CO2 data from 2019-2020.Within the data package, "FLMD.csv" describes file-level metadata and "dd.csv" defines column headers and universal terms across the dataset. The data package includes 4 "*data.csv" files, one for each calendar year in the dataset. Each "*data.csv" file has a corresponding "*_InstallationMethods.csv" file that describes the location, sensor model, sensor serial number and other metadata corresponding for each measured parameter. Because sensors have been added over time, not every sensor has data dating back to Oct 2018. Note that there is a data gap over winter 2019-2020 due to a power outage. While this repository currently only contains data through December 2021, the dataset will be updated as additional years are collected and processed.

54 ENVIRONMENTAL SCIENCES↗

Response of some Thematic Mapper band ratios to variation in soil water content

Bidirectional reflectance to nadir in the reflective TM bands and the 1.15-1.3-micron band was measured in the laboratory as moisture content was varied in ten soils. Stronger absorption by water in TM5 and TM7 was expected to cause ratios of other bands to TM5 and TM7 to increase with water content, but in most cases these ratios were constant or decreased at low to intermediate water content and increased only at high moisture levels. Because these ratios were found to decrease as illumination elevation angle decreased, it was suggested that increased roughness resulting from the methods of moistening and mixing the soil may have tended to counteract the expected ratio increases.

Musick, H. Brad↗