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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Filling the Gaps: A Bayesian Mixture Model for Imputing Missing Soil Water Content Data

ABSTRACT Soil water content (SWC) data are central to evaluating how soil moisture varies over time and space and influences critical plant and ecosystem functions, especially in water‐limited drylands. However, sensors that record SWC at high frequencies often malfunction, leading to incomplete timeseries and limiting our understanding of dryland ecosystem dynamics. We developed an analytical approach to impute missing SWC data, which we tested at six eddy flux tower sites along an elevation gradient in the southwestern United States. We impute missing data as a mixture of linearly interpolated SWC between the observed endpoints of a missing data gap and SWC simulated by an ecosystem water balance model (SOILWAT2). Within a Bayesian framework, we allowed the relative utility (mixture weight) of each component (linearly interpolated vs. SOILWAT2) to vary by depth, site and gap characteristics. We explored “fixed” weights versus “dynamic” weights that vary as a function of cumulative precipitation, average temperature, and time since the start of the gap. Both models estimated missing SWC data well ( R 2 = 0.70–0.88 vs. 0.75–0.91 for fixed vs. dynamic weights, respectively), but the utility of linearly interpolated versus SOILWAT2 values depended on site and depth. SOILWAT2 was more useful for more arid sites, shallower depths, longer and warmer gaps and gaps that received greater precipitation. Overall, the mixture model reliably gap‐fills SWC, while lending insight into processes governing SWC dynamics. This approach to impute missing data could be adapted to accommodate more than two mixture components and other types of environmental timeseries.

Ogle, Kiona [School of Informatics, Computing, and↗
DOE OSTI2021

Topographical shifts in fine root lifespan in a mixed, mesic temperate forest

Root lifespan, often is estimated in landscape- and ecosystem-level carbon models using linear approximations. In water manipulation experiments, fine root lifespan can vary with soil water content. Soil water content is generally structured by complex topography, which is largely unaccounted for in landscape- and ecosystem-scale carbon models. Topography governs the range of soil water content experienced by roots which may impact their lifespan. We hypothesized that root lifespan varied nonlinearly across a temperate, mesic, forested catchment due to differences in soil water content associated with topographic position. We expected regions of the landscape that were too wet or too dry would have soils that were not optimal for roots and thus result in shorter root lifespans. Specifically, we hypothesized that root lifespan would be longest in areas that consistently had soil water content in the middle of the soil water content spectrum, while in soils at either very low or very high soil water content, root lifespan would be relatively short. We tested this hypothesis by collecting and analyzing two years of minirhizotron and soil moisture data in plots widely distributed in the Shale Hills catchment of the Susquehanna-Shale Hills Critical Zone Observatory in Pennsylvania. We found that fine root lifespans were longer in traditionally wetter topographic regions, but detected no short term (biweekly) effect of soil moisture on root lifespan. Additionally, depth in soil, soil series, slope face orientation, and season of birth strongly affected root lifespans across the catchment. In contrast, lifespan was unaffected by root diameter or mycorrhizal association. Failure to account for these variables could result in erroneous estimates of fine root lifespan and, consequentially, carbon flux in temperate forested regions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Root water uptake of biofuel crops revealed by coupled electrical resistivity and soil water content measurements

Abstract Biofuel crops, including annuals such as maize ( Zea mays L.), soybean [ Glycine max (L.) Merr.], and canola ( Brassica napus L.), as well as high‐biomass perennial grasses such as miscanthus ( Miscanthus × giganteus J.M. Greef & Deuter ex Hodkinson & Renvoiz), are candidates for sustainable alternative energy sources. However, large‐scale conversion of croplands to perennial biofuel crops could have substantial impacts on regional water, nutrient, and C cycles due to the longer growing seasons and differences in rooting systems compared with most annual crops. However, due to the limited tools available to nondestructively study the spatiotemporal patterns of root water uptake in situ at field scales, these differences in crop water use are not well known. Geophysical imaging tools such as electrical resistivity (ER) reveal changes in water content in the soil profile. In this study, we demonstrate the use of a novel coupled hydrogeophysical approach with both time domain reflectometry soil water content and ER measurements to compare root water uptake and soil properties of an annual crop rotation with the perennial grass miscanthus, across three growing seasons (2009–2011) in southwest Michigan, USA. We estimated maximum root depths to be between 1.2 and 2.2 m, with the vertical distribution of roots being notably deeper in 2009 relative to 2010 and 2011, likely due to the drought conditions during that first year. Modeled cumulative ET of both crops was underestimated (2–34%) relative to estimates obtained from soil water drawdown in prior studies but was found to be greater in the perennial grass than the annual crops, despite shallower modeled rooting depths in 2010 and 2011.

Kuhl, Alexandria S.↗
DOE OSTI2025

Observed and Imputed Volumetric Soil Water Content Timeseries for the New Mexico Elevation Gradient

Reliable soil water content (SWC) data are essential for understanding dryland ecosystem dynamics, but high-frequency SWC sensors often fail, creating gaps in critical datasets. To address this, we developed a Bayesian mixture model that imputes missing SWC using both linear interpolation and an ecosystem water balance model (SOILWAT2), tested across six AmeriFlux eddy covariance tower sites in the New Mexico Elevation Gradient, demonstrating its effectiveness in reconstructing SWC patterns while providing insights into the factors driving SWC variability. Daily volumetric soil water content (SWC) data are provided as csv-formatted spreadsheets for the six AmeriFlux sites (US-Seg, US-Ses, US-Wjs, US-Mpi, US-Vcp, and US-Vcs). For each site there is an observed SWC file (site_SWC_gapfill.csv) and a file that contains imputed SWC (imputed_SWC_site.csv). The observed SWC files contain temperature corrected sensor values, tower precipitation data, as well as outputs from SOILWAT2 simulations that were used to impute SWC. The imputed files contain the original observed SWC values and the imputed missing SWC values. When SWC was missing from the original data, the missing value was imputed based on the Bayesian imputation mixture model. The posterior mean of all imputed values is reported as "mean_X". When the observed SWC was NOT missing, mean_X = observed SWC value (original data). The standard deviation, 2.5th percentile and the 97.5th percentile for the imputed values are also reported in the imputed files. There are readme text files for each file type explaining the contents of each column.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Changes in soil water content and lateral flow exert large effects on soil thermal dynamics across Alaskan landscapes

Both lateral surface and subsurface water flow affect soil moisture dynamics, yet most land surface models only solve subsurface water movement vertically. Here, we use a 3D ecosystem model that considers both land surface and subsurface hydrologic processes to simulate soil moisture, which is then used to drive a 1-D vertical soil thermal model to simulate the soil moisture effects on soil thermal dynamics in central Alaska. Our coupled model improves soil temperature (ST) estimates by 43.5% in comparison with observational data. Soil moisture has little effect on ST during the wet season (-1.5%) and a substantial influence during the dry season (60%). Spatially, water lateral flow has significant impacts on both soil moisture and ST, causing model estimates for thawed areas in the transition season to increase by ~10% in the study area. Our results highlight the importance of considering dynamical soil moisture, as well as lateral flow effects, on soil thermal dynamics in permafrost regions.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Field-Scale Lysimeter Studies of Glass and Cementitious Waste Forms at the Hanford Site - 20392

The Hanford site Integrated Disposal Facility (IDF) will receive waste forms from vitrification activities at the Hanford Waste Treatment and Immobilization Plant (WTP). The waste form inventory to be disposed of at the IDF will consist of vitrified low-activity waste (LAW) in glass forms and solidified (or encapsulated) secondary wastes in cementitious forms. The IDF is a near-surface burial facility located near Hanford's Waste Treatment and Immobilization Plant in the 200 East Area of the site's Central Plateau. An extensive set of laboratory experimental data has been collected to support IDF performance assessment calculations of the eventual degradation of waste forms and mobility of contaminants. This paper describes the start of a field experiment to generate waste-form performance data on a larger scale (tens of centimeters), over a longer duration (five years or more), and under field conditions representative of the IDF. Results from this study are expected to improve model descriptions of contaminant mobility, reduce uncertainties about the representativeness of laboratory results in the IDF performance assessment, improve stakeholder confidence in the safe disposal of treated waste at the IDF, and facilitate the adoption of informed facility designs with the potential to reduce operational costs. A lysimeter test facility near Hanford's 200 West Area has been repurposed to carry out long-term assessments of waste forms buried in sediments excavated from the IDF. The waste forms are buried in large drainage lysimeters, open caissons that are two meters in diameter and three meters deep. Waste forms are buried in up to six locations in each lysimeter. Samplers collect pore water and drainage water beneath the waste forms and air from the pore space adjacent to waste forms. Sensors measure temperature, soil water content, soil water tension, and drainage flux. One lysimeter containing cementitious waste forms and one containing glass waste forms have been completed, along with a control lysimeter (without waste forms). The cementitious waste forms are Cast Stone grout formulations using a liquid secondary waste simulant and a generic Hanford high-salt simulant, as well as a hydrated lime-based grout formulation using a liquid secondary waste simulant. Technetium-99 and iodine-127 were added as tracers to monitor contaminant mobility. Glass waste forms were fabricated in two formulations (LAWA44 and ORLEC28), with rhenium and molybdenum tracers to monitor waste form degradation. The predicted performance of the waste forms in the lysimeters was modeled prior to installation to determine waste form size, tracer concentration/activity, and locations of sensors and samplers. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
DOE OSTI2023

Real-Time, Simultaneous Soil Water Content and Meteorological Data Measurement to Support TRACER over Harris County, Texas (Field Campaign Report: Part I)

The main purpose of this project was to provide ground-truth and satellite-based soil water content data in the Houston, Texas, area to support the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility’s 2022 field campaign, the Tracking Aerosol Convection Interactions ExpeRiment (TRACER). This involved installing four soil monitoring stations at different locations in the Houston area, two of which were part of the ARM facility and two were ancillary. The two stations associated directly with ARM were installed alongside other facilities managed and maintained by the TRACER research team during the intensive operational period (IOP), one located at the La Porte, Texas airport and the other near Guy, Texas. Data from these stations were assimilated with similar data collected by the Harris County Flood Control District (HCFCD) to improve the spatial coverage of the real-time monitoring network. The ground-truth data were compared to the satellite-based (National Aeronautics and Space Administration [NASA]’s Soil Moisture Active Passive [SMAP] mission) data in the TRACER area of interest, and analyzed further to nowcast gridded data over the Houston area. The nowcasted, gridded data product was made available to TRACER researchers for use in climate and land-atmosphere interaction modeling that can help understand formation and persistence of convective storms in dense urban areas, and predict possible environmental events such as floods.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Real-Time, Simultaneous Soil Water Content and Meteorological Data Measurement to Support TRACER over Harris County, Texas Field Campaign Report: Part II

The main purpose of this project was to provide ground-truth and satellite-based soil water content data in the Houston, Texas, area to support the U.S. Department of Energy Atmospheric Radiation Measurement (ARM) user facility’s 2022 field campaign, the Tracking Aerosol Convection Interactions ExpeRiment (TRACER). This involved installing four soil monitoring stations at different locations in the Houston area, two of which were part of the ARM facility and two were ancillary. The two stations associated directly with ARM were installed alongside other facilities managed and maintained by the TRACER research team during the intensive operational period (IOP), one located at the La Porte, Texas airport and the other located near Guy, Texas. Data from these stations were assimilated with similar data collected by the Harris County Flood Control District (HCFCD) to improve the spatial coverage of the real-time monitoring network. The ground-truth data were compared to the satellite-based (National Aeronautics and Space Administration [NASA]’s Soil Moisture Active Passive [SMAP] mission) data in the TRACER area of interest, and analyzed further to nowcast gridded data over the Houston area. The nowcasted, gridded data product was made available to TRACER researchers for use in climate and land-atmosphere interaction modeling that can help understand formation and persistence of convective storms in dense urban areas, and predict possible environmental events such as floods.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Soil water content, matric potential, carbon dioxide and oxygen concentrations, Oct 2018-Dec 2021, Slate River Floodplain, Crested Butte, Colorado

This data package includes a time series of soil sensor data (temperature, water content, bulk electrical conductivity, porewater dissolved oxygen and porewater dissolved carbon dioxide) in a vertical profile from the Slate River floodplain outside Crested Butte, Colorado, a focus field site for the SLAC Floodplain Hydro-Biogeochemistry SFA. The data was generated as part of the work targeting the overarching research question for the SLAC SFA: How do ubiquitous subsurface interfaces mediate molecular-scale biogeochemical processes and groundwater quality in floodplains and watersheds? The package includes: (1) soil temperature, volumetric water content and electrical conductivity at 40, 60 and 82.5 cm depth; (2) soil matric potential at 40, 60, 79 and 100 cm depth; (3) soil CO2 concentrations at 40, 60 and 82.5 cm depth; and (4) soil oxygen concentrations at 60, 82.5, 100, 135, 170 and 182 cm depth. Both the carbon dioxide and oxygen sensors are optical sensors that can measure the partial pressure of oxygen in both saturated and unsaturated conditions. Unfortunately, soil CO2 in the profile is unexpectedly high and above the sensor calibration range (0-25,000 ppm). In addition, soil CO2 sensors failed within a year of deployment, so we only report CO2 data from 2019-2020.Within the data package, "FLMD.csv" describes file-level metadata and "dd.csv" defines column headers and universal terms across the dataset. The data package includes 4 "*data.csv" files, one for each calendar year in the dataset. Each "*data.csv" file has a corresponding "*_InstallationMethods.csv" file that describes the location, sensor model, sensor serial number and other metadata corresponding for each measured parameter. Because sensors have been added over time, not every sensor has data dating back to Oct 2018. Note that there is a data gap over winter 2019-2020 due to a power outage. While this repository currently only contains data through December 2021, the dataset will be updated as additional years are collected and processed.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Active layer thickness as a function of soil water content

Active layer thickness (ALT) is a critical metric for monitoring permafrost. How soil moisture influences ALT depends on two competing hypotheses: (a) increased soil moisture increases the latent heat of fusion for thaw, resulting in shallower active layers, and (b) increased soil moisture increases soil thermal conductivity, resulting in deeper active layers. To investigate their relative influence on thaw depth, we analyzed the Field Measurements of Soil Moisture and Active Layer Thickness (SMALT) in Alaska and Canada dataset, consisting of thousands of measurements of thaw depth and soil moisture collected at dozens of sites across Alaska and Canada as part of NASA’s Arctic Boreal Vulnerability Experiment (ABoVE). As bulk volumetric water content (VWC) integrated over the entire active layer increases, ALT decreases, supporting the latent heat hypothesis. However, as VWC in the top 12 cm of soil increases, ALT increases, supporting the thermal conductivity hypothesis. Regional temperature variations determine the baseline thaw depth while precipitation may influence the sensitivity of ALT to changes in VWC. Soil latent heat dominates over thermal conductivity in determining ALT, and the effect of bulk VWC on ALT appears consistent across sites.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) from the Dominican Republic, February 2013 - August 2017.

Daily data that has been processed to monthly. Data represents near-surface soil moisture (depth of 0-10 cm) at a latitude of 19.76 N, and longitude -70.57 E. Data was downloaded from the PBO soil moisture data network and is publicly available. Data from this site is referenced as Dominican Republic (1) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) located in the Dominican Republic , February 2013 - December 2016

Daily data that has been processed to monthly. Data represents near-surface soil moisture (depth of 0-10 cm) at a latitude of 17.90 N, and longitude -71.67 E. Data was downloaded from the PBO soil moisture data network and is publicly available. Data from this site is referenced as Dominican Republic (2) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Characterizing soil water content variability across spatial scales from optimized high-resolution distributed temperature sensing technique

Fiber-optic Distributed Temperature Sensing, when combined with the Single-probe Heat-pulse technique can measure soil moisture (θ) across spatial scales. The key limitation of this system is in obtaining the relationship between soil thermal conductivity (λ) and θ for a specific field. Using the Department of Energy Atmospheric Radiation Measurement (ARM) site, this study tested a new methodology to account for the spatial variability in the λ-θ relationship using a Gaussian processes model. The resulting accurate θ measurements (RMSE = 0.03 m 3 m –3 ) were used to characterize the spatial variability of θ across scales and to develop an empirical equation that can correct for the changes in the θ spatial variability observed at different spatial resolutions. In addition, the number of required samples to accurately characterize θ and its variability over scales ranging from 5 m and 350 m were estimated. Finally, these findings provide key information to scale soil moisture from centimeters to hundreds of meters for process understanding.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) from Australia, November 2007 - May 2009

Hourly data processed to monthly. Data collected from Eddy Covariance Flux Tower at near-surface (0-10 cm). Site located at latitude -13.08 deg N, longitude 131.12 deg E. Data was downloaded from the FluxNet soil moisture data network and is publicly available. Data from this site located at, referenced as Australia (3) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) from Australia, August 2001 - December 2014

Hourly data processed to monthly. Data collected from Eddy Covariance Flux Tower at near-surface (0-10 cm). Site located at latitude -12.49 deg N, longitude 131.15 deg E. Data was downloaded from the FluxNet soil moisture data network and is publicly available. Data from this site is referenced as Australia (4) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) from Guyaflux site, French Guiana, January 2007 - December 2014

Daily data processed to monthly. Data was collected from Eddy Covariance Flux Tower at the near-surface (0-10 cm). Site located at latitude 5.28 deg N, longitude -52.92 deg E. Data was downloaded from the FluxNet soil moisture data network and is publicly available. Data from this site is referenced as French Guiana (2) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3) located in Santarem, Brazil K67, July 2000 - February 2004

Hourly data processed to monthly. Data collected from Eddy Covariance Flux Tower at the near-surface (0-10 cm). Site located at a latitude -3.02 deg N, longitude -54.97 deg E. Data was downloaded from the FluxNet soil moisture data network and is publicly available. Data from this site is referenced as Brazil (3) in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Soil Water Content (m3 m-3), October 2011 - May 2017

Hourly data processed to monthly. Data collected from Cosmic Neutron Probes at variable depth averaging 15 cm that was interpolated to near-surface (0-10 cm). Site located at latitude 0.28 deg N, longitude 36.87 deg E. Data was downloaded from the The COsmic-ray Soil Moisture Observing System (COSMOS) soil moisture data network and is publicly available. Data was made available by the COsmic-ray Soil Moisture Observing SysteM (COSMOS). Data from this site is referenced as Kenya in Table 1 and Figure 4 of Solander et al., 2020, The pan-tropical soil moisture response to El Nino, Hydrol. Earth Syst. Sci., in press.

54 ENVIRONMENTAL SCIENCES↗