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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

CFM-ID 4.0: More Accurate ESI MS/MS Spectral Prediction and Compound Identification

In the field of metabolomics, mass spectrometry (MS) is the method most commonly used for identifying and annotating metabolites. As this typically involves matching a given MS spectrum against an experimentally acquired reference spectral library, this approach is limited by the coverage and size of such libraries (which typically number in the thousands). These experimental libraries can be greatly extended by predicting the MS spectra of known chemical structures (which number in the millions) to create computational reference spectral libraries. To facilitate the generation of predicted spectral reference libraries we developed CFM-ID, a computer program that can accurately predict ESI-MS/MS spectrum for a given compound structure. CFM-ID is one of the best-performing methods for compound-to-mass-spectrum prediction, and also one of the top tools for in silico mass-spectrum-to-compound identification. This work improves CFM-ID’s ability to predict ESI-MS/MS spectra from compounds by: (1) learning parameters from features based on the molecular topology, (2) adding a new approach to ring cleavage that models such cleavage as a sequence of simple chemical bond dissociations and (3) expanding its hand-written rule-based predictor to cover more chemical classes, including acylcarnitines, acylcholines, flavonols, flavones, flavanones, and flavonoid glycosides. We demonstrate that this new version of CFM-ID (version 4.0) is significantly more accurate than previous CFM-ID versions, in terms of both EI-MS/MS spectral prediction and compound identification. CFM-ID 4.0 is available at http://cfmid4.wishartlab.com/ as a webservice and docker images can be downloaded at https://hub.docker.com/r/wishartlab/cfmid

Wang, Fei↗
DOE OSTI2020

Short-wavelength-sensitive 2 (Sws2) visual photopigment models combined with atomistic molecular simulations to predict spectral peaks of absorbance

For many species, vision is one of the most important sensory modalities for mediating essential tasks that include navigation, predation and foraging, predator avoidance, and numerous social behaviors. The vertebrate visual process begins when photons of the light interact with rod and cone photoreceptors that are present in the neural retina. Vertebrate visual photopigments are housed within these photoreceptor cells and are sensitive to a wide range of wavelengths that peak within the light spectrum, the latter of which is a function of the type of chromophore used and how it interacts with specific amino acid residues found within the opsin protein sequence. Minor differences in the amino acid sequences of the opsins are known to lead to large differences in the spectral peak of absorbance (i.e. the λ max value). In our prior studies, we developed a new approach that combined homology modeling and molecular dynamics simulations to gather structural information associated with chromophore conformation, then used it to generate statistical models for the accurate prediction of λ max values for photopigments derived from Rh1 and Rh2 amino acid sequences. In the present study, we test our novel approach to predict the λ max of phylogenetically distant Sws2 cone opsins. To build a model that can predict the λ max using our approach presented in our prior studies, we selected a spectrally-diverse set of 11 teleost Sws2 photopigments for which both amino acid sequence information and experimentally measured λ max values are known. The final first-order regression model, consisting of three terms associated with chromophore conformation, was sufficient to predict the λ max of Sws2 photopigments with high accuracy. This study further highlights the breadth of our approach in reliably predicting λ max values of Sws2 cone photopigments, evolutionary-more distant from template bovine RH1, and provided mechanistic insights into the role of known spectral tuning sites.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

Predicting impurity spectral functions using machine learning

The Anderson Impurity Model (AIM) is a canonical model of quantum many-body physics. Here we investigate whether machine learning models, both neural networks (NN) and kernel ridge regression (KRR), can accurately predict the AIM spectral function in all of its regimes, from empty orbital, to mixed valence, to Kondo. To tackle this question, we construct two large spectral databases containing approximately 410 000 and 600 000 spectral functions of the single-channel impurity problem. We show that the NN models can accurately predict the AIM spectral function in all of its regimes, with pointwise mean absolute errors down to 0.003 in normalized units. We find that the trained NN models outperform models based on KRR and enjoy a speedup on the order of 10 5 over traditional AIM solvers. Finally, the required size of the training set of our model can be significantly reduced using farthest point sampling in the AIM parameter space, which is important for generalizing our method to more complicated multichannel impurity problems of relevance to predicting the properties of real materials.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗
NASA NTRS2014

Comparisons Between Model Predictions and Spectral Measurements of Charged and Neutral Particles on the Martian Surface

Detailed measurements of the energetic particle radiation environment on the surface of Mars have been made by the Radiation Assessment Detector (RAD) on the Curiosity rover since August 2012. RAD is a particle detector that measures the energy spectrum of charged particles (10 to approx. 200 MeV/u) and high energy neutrons (approx 8 to 200 MeV). The data obtained on the surface of Mars for 300 sols are compared to the simulation results using the Badhwar-O'Neill galactic cosmic ray (GCR) environment model and the high-charge and energy transport (HZETRN) code. For the nuclear interactions of primary GCR through Mars atmosphere and Curiosity rover, the quantum multiple scattering theory of nuclear fragmentation (QMSFRG) is used. For describing the daily column depth of atmosphere, daily atmospheric pressure measurements at Gale Crater by the MSL Rover Environmental Monitoring Station (REMS) are implemented into transport calculations. Particle flux at RAD after traversing varying depths of atmosphere depends on the slant angles, and the model accounts for shielding of the RAD "E" dosimetry detector by the rest of the instrument. Detailed comparisons between model predictions and spectral data of various particle types provide the validation of radiation transport models, and suggest that future radiation environments on Mars can be predicted accurately. These contributions lend support to the understanding of radiation health risks to astronauts for the planning of various mission scenarios

Kim, Myung-Hee Y.↗
NASA NTRS1986

Sharply curved turn around duct flow predictions using spectral partitioning of the turbulent kinetic energy and a pressure modified wall law

Computational predictions of turbulent flow in sharply curved 180 degree turn around ducts are presented. The CNS2D computer code is used to solve the equations of motion for two-dimensional incompressible flows transformed to a nonorthogonal body-fitted coordinate system. This procedure incorporates the pressure velocity correction algorithm SIMPLE-C to iteratively solve a discretized form of the transformed equations. A multiple scale turbulence model based on simplified spectral partitioning is employed to obtain closure. Flow field predictions utilizing the multiple scale model are compared to features predicted by the traditional single scale k-epsilon model. Tuning parameter sensitivities of the multiple scale model applied to turn around duct flows are also determined. In addition, a wall function approach based on a wall law suitable for incompressible turbulent boundary layers under strong adverse pressure gradients is tested. Turn around duct flow characteristics utilizing this modified wall law are presented and compared to results based on a standard wall treatment.

Santi, L. Michael↗
DOE OSTI2020

Predicting mesoscale spectral thermal conductivity using advanced deterministic phonon transport techniques

We present a review, demonstration and simulation of phonon transport for the purposes of predicting materials performance at the mesoscale. We focus primarily on the development and implementation of a unified methodology to enable predictive heat transport. We report on the current state of the art as it pertains to deterministic phonon transport methodologies, discussing various topics concerning phonons. In application, we focus on the Self-Adjoint Angular Flux (SAAF) formulation of the Boltzmann transport equation for phonons, and develop the spatial, angular, and material property discretization required to accurately simulate the predictive physics of heat transport in dielectrics. We discuss thermal interfacial resistance and present our formulation of the diffuse mismatch model for simulating phonon interactions at internal boundaries. We have recently developed a deterministic, spectral phonon transport method for predicting effective thermal conductivity ($\kappa_{\textrm{eff}}$), using Bose-Einstein source terms coupled through an average material temperature. In this method, we introduce a closure term to the phonon transport system which acts as a redistribution function for the total energy of the system, and serves as a guide for the amount of non-equilibrium behavior occurring in the system. This method predicts thermal conductivity and equilibrium temperature distributions in homogeneous and heterogeneous materials using data generated by ab initio density functional theory methods. We employ polarization, density of states and full dispersion spectra to resolve thermal conductivity with numerous angular and spatial discretizations. Our implementation utilizes a Richardson iteration on a modified version of the phonon scattering source. The equations associated with this method are solved via a modification of traditional source iteration. We compare the performance of source iteration applied to an existing uncoupled, traditional SAAF method to our new method and comment on the iterative performance of each. We observe ballistic and diffusive phonon scattering as acoustic thickness of the domain changes, and are able to make comparisons between the accuracy and efficiency of both methods.

36 MATERIALS SCIENCE↗
DOE OSTI2022

CFM-ID 4.0 – a web server for accurate MS-based metabolite identification

The CFM-ID 4.0 web server (https://cfmid.wishartlab.com) is an online tool for predicting, annotating and interpreting tandem mass (MS/MS) spectra of small molecules. It is specifically designed to assist researchers pursuing studies in metabolomics, exposomics and analytical chemistry. More specifically, CFM-ID 4.0 supports the: 1) prediction of electrospray ionization quadrupole time-of-flight tandem mass spectra (ESI-QTOF-MS/MS) for small molecules over multiple collision energies (10 eV, 20 eV, and 40 eV); 2) annotation of ESI-QTOF-MS/MS spectra given the structure of the compound; and 3) identification of a small molecule that generated a given ESI-QTOF-MS/MS spectrum at one or more collision energies. The CFM-ID 4.0 web server makes use of a substantially improved MS fragmentation algorithm, a much larger database of experimental and in silico predicted MS/MS spectra and improved scoring methods to offer more accurate MS/MS spectral prediction and MS/MS-based compound identification. Compared to earlier versions of CFM-ID, this new version has an MS/MS spectral prediction performance that is ~22% better and a compound identification accuracy that is ~35% better on a standard (CASMI 2016) testing dataset. CFM-ID 4.0 also features a neutral loss function that allows users to identify similar or substituent compounds where no match can be found using CFM-ID’s regular MS/MS-to-compound identification utility. Finally, the CFM-ID 4.0 web server now offers a much more refined user interface that is easier to use, supports molecular formula identification (from MS/MS data), provides more interactively viewable data (including proposed fragment ion structures) and displays MS mirror plots for comparing predicted with observed MS/MS spectra. These improvements should make CFM-ID 4.0 much more useful to the community and should make small molecule identification much easier, faster, and more accurate.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS2011

Development of Jet Noise Power Spectral Laws

High-quality jet noise spectral data measured at the Aero-Acoustic Propulsion Laboratory (AAPL) at NASA Glenn is used to develop jet noise scaling laws. A FORTRAN algorithm was written that provides detailed spectral prediction of component jet noise at user-specified conditions. The model generates quick estimates of the jet mixing noise and the broadband shock-associated noise (BBSN) in single-stream, axis-symmetric jets within a wide range of nozzle operating conditions. Shock noise is emitted when supersonic jets exit a nozzle at imperfectly expanded conditions. A successful scaling of the BBSN allows for this noise component to be predicted in both convergent and convergent-divergent nozzles. Configurations considered in this study consisted of convergent and convergent- divergent nozzles. Velocity exponents for the jet mixing noise were evaluated as a function of observer angle and jet temperature. Similar intensity laws were developed for the broadband shock-associated noise in supersonic jets. A computer program called sJet was developed that provides a quick estimate of component noise in single-stream jets at a wide range of operating conditions. A number of features have been incorporated into the data bank and subsequent scaling in order to improve jet noise predictions. Measurements have been converted to a lossless format. Set points have been carefully selected to minimize the instability-related noise at small aft angles. Regression parameters have been scrutinized for error bounds at each angle. Screech-related amplification noise has been kept to a minimum to ensure that the velocity exponents for the jet mixing noise remain free of amplifications. A shock-noise-intensity scaling has been developed independent of the nozzle design point. The computer program provides detailed narrow-band spectral predictions for component noise (mixing noise and shock associated noise), as well as the total noise. Although the methodology is confined to single streams, efforts are underway to generate a data bank and algorithm applicable to dual-stream jets. Shock-associated noise in high-powered jets such as military aircraft can benefit from these predictions.

Khavaran, Abbas↗
DOE OSTI2020

Optimization and Prediction of Spectral Response of Metasurfaces Using Artificial Intelligence

Hot-electron generation has been a topic of intense research for decades for numerous applications ranging from photodetection and photochemistry to biosensing. Recently, the technique of hot-electron generation using non-radiative decay of surface plasmons excited by metallic nanoantennas, or meta-atoms, in a metasurface has attracted attention. These metasurfaces can be designed with thicknesses on the order of the hot-electron diffusion length. The plasmonic resonances of these ultrathin metasurfaces can be tailored by changing the shape and size of the meta-atoms. One of the fundamental mechanisms leading to generation of hot-electrons in such systems is optical absorption, therefore, optimization of absorption is a key step in enhancing the performance of any metasurface based hot-electron device. Here we utilized an artificial intelligence-based approach, the genetic algorithm, to optimize absorption spectra of plasmonic metasurfaces. Using genetic algorithm optimization strategies, we designed a polarization insensitive plasmonic metasurface with 90% absorption at 1550 nm that does not require an optically thick ground plane. We fabricated and optically characterized the metasurface and our experimental results agree with simulations. Finally, we present a convolutional neural network that can predict the absorption spectra of metasurfaces never seen by the network, thereby eliminating the need for computationally expensive simulations. Our results suggest a new direction for optimizing hot-electron based photodetectors and sensors.

77 NANOSCIENCE AND NANOTECHNOLOGY↗
NASA NTRS1992

Redox effects in ordinary chondrites and implications for asteroid spectrophotometry

The sensitivity of reflectance spectra to mean ferrous iron content and olivine and pyroxene proportion enhancements in the course of metamorphic oxidation is presently used to examine whether metamorphically-induced ranges in mineralogy, and corresponding spectral parameters, may explain the observed variations in S-asteroid rotational spectra. The predicted spectral variations within any one chondrite class are, however, insufficient to account for S-asteroid rotational spectra, and predicted spectral-range slopes have a sign opposite to the rotational measurements. Metamorphic oxidation is found unable to account for S-asteroid rotational spectra.

Mcsween, Harry Y., Jr.↗
NASA NTRS2002

A Parametric Study of Fine-scale Turbulence Mixing Noise

The present paper is a study of aerodynamic noise spectra from model functions that describe the source. The study is motivated by the need to improve the spectral shape of the MGBK jet noise prediction methodology at high frequency. The predicted spectral shape usually appears less broadband than measurements and faster decaying at high frequency. Theoretical representation of the source is based on Lilley's equation. Numerical simulations of high-speed subsonic jets as well as some recent turbulence measurements reveal a number of interesting statistical properties of turbulence correlation functions that may have a bearing on radiated noise. These studies indicate that an exponential spatial function may be a more appropriate representation of a two-point correlation compared to its Gaussian counterpart. The effect of source non-compactness on spectral shape is discussed. It is shown that source non-compactness could well be the differentiating factor between the Gaussian and exponential model functions. In particular, the fall-off of the noise spectra at high frequency is studied and it is shown that a non-compact source with an exponential model function results in a broader spectrum and better agreement with data. An alternate source model that represents the source as a covariance of the convective derivative of fine-scale turbulence kinetic energy is also examined.

Khavaran, Abbas↗
NASA NTRS1993

Observations of aerosol by the HALOE experiment onboard UARS - A preliminary validation

The HALOE experiment measures vertical profiles of aerosol extinction at five infrared wavelengths. Four of these observations are obtained using a combination of gas filter and broadband radiometer measurements in bands of HF, HCl, CH4, and NO centered at wavelengths of 2.45, 3.40, 3.45, and 5.26 microns, respectively. The fifth is obtained using broadband radiometer measurements of CO2 transmission at 2.79 microns. Error analysis shows that the random extinction uncertainties are generally less than 10 percent in the aerosol layer, increasing to over 20 percent at the profile tops. HALOE spectral extinction measurements are shown to be consistent with predicted spectral extinction for stratospheric sulfate aerosol. Profile comparisons between HALOE and independent sources result in generally good agreement in the shape and magnitude of peak extinction and the altitude where the peak extinction occurs. In addition, global aerosol distributions obtained from the data are consistent with expected aerosol morphology. Although the validation is preliminary, the HALOE aerosol data appear to be of excellent quality and to accurately represent optical characteristics and distribution of the aerosols.

Hervig, Mark E.↗
NASA NTRS1977

Spectral energetics and predictability studies

One and two-dimensional spectral analyses were performed on the GISS general circulation model. The one-dimensional results imply that low eddy kinetic energy is caused by low conversions from the zonal mean kinetic energy. The two-dimensional results confirm that low wave number spectral coefficients approach the predictability limit slower than high wave number coefficients and suggest ways of estimating the rate of approach to the predictability limit.

Tenenbaum, J.↗
NASA NTRS2018

Solar Energetic Particle Events Observed by the PAMELA Mission

Despite the significant progress achieved in recent years, the physical mechanisms underlying the origin of solar energetic particles (SEPs) are still a matter of debate. The complex nature of both particle acceleration and transport poses challenges to developing a universal picture of SEP events that encompasses both the low-energy (from tens of keV to a few hundreds of MeV)observations made by space-based instruments and the GeV particles detected by the worldwide network of neutron monitors in ground-level enhancements (GLEs). The high-precision data collected by the Payload for Antimatter Matter Exploration and Light-nuclei Astrophysics (PAMELA) satellite experiment offer a unique opportunity to study the SEP fluxes between ∼80 MeV and a few GeV, significantly improving the characterization of the most energetic events. In particular, PAMELA can measure for the first time with good accuracy the spectral features at moderate and high energies, providing important constraints for current SEP models. In addition, the PAMELA observations allow the relationship between low and high-energy particles to be investigated, enabling a clearer view of the SEP origin. No qualitative distinction between the spectral shapes of GLE, sub-GLE and non-GLE events is observed, suggesting that GLEs are not a separate class, but are the subset of a continuous distribution of SEP events that are more intense at high energies. While the spectral forms found are to be consistent with diffusive shock acceleration theory, which predicts spectral rollovers at high energies that are attributed to particles escaping the shock region during acceleration, further work is required to explore the relative influences of acceleration and transport processes on SEP spectra.

Bruno, A.↗
NASA NTRS1995

Monte Carlo simulations of particle acceleration at oblique shocks: Including cross-field diffusion

The Monte Carlo technique of simulating diffusive particle acceleration at shocks has made spectral predictions that compare extremely well with particle distributions observed at the quasi-parallel region of the earth's bow shock. The current extension of this work to compare simulation predictions with particle spectra at oblique interplanetary shocks has required the inclusion of significant cross-field diffusion (strong scattering) in the simulation technique, since oblique shocks are intrinsically inefficient in the limit of weak scattering. In this paper, we present results from the method we have developed for the inclusion of cross-field diffusion in our simulations, namely model predictions of particle spectra downstream of oblique subluminal shocks. While the high-energy spectral index is independent of the shock obliquity and the strength of the scattering, the latter is observed to profoundly influence the efficiency of injection of cosmic rays into the acceleration process.

Baring, M. G.↗
DOE OSTI2022

Probing plasma physics with spectral index maps of accreting black holes on event horizon scales

The Event Horizon Telescope (EHT) collaboration has produced the first resolved images of the supermassive black holes at the centre of our galaxy and at the centre of the elliptical galaxy M87. As both technology and analysis pipelines improve, it will soon become possible to produce spectral index maps of black hole accretion flows on event horizon scales. Here, in this work, we predict spectral index maps of both M87* and Sgr A* by applying the general relativistic radiative transfer (GRRT) code IPOLE to a suite of general relativistic magnetohydrodynamic (GRMHD) simulations. We analytically show that the spectral index increases with increasing magnetic field strength, electron temperature, and optical depth. Consequently, spectral index maps grow more negative with increasing radius in almost all models, since all of these quantities tend to be maximized near the event horizon. Additionally, photon ring geodesics exhibit more positive spectral indices, since they sample the innermost regions of the accretion flow with the most extreme plasma conditions. Spectral index maps are sensitive to highly uncertain plasma heating prescriptions (the electron temperature and distribution function). However, if our understanding of these aspects of plasma physics can be tightened, even the spatially unresolved spectral index around 230 GHz can be used to discriminate between models. In particular, Standard and Normal Evolution (SANE) flows tend to exhibit more negative spectral indices than Magnetically Arrested Disc (MAD) flows due to differences in the characteristic magnetic field strength and temperature of emitting plasma.

(magnetohydrodynamics) MHD↗