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At least 19 records

The unique architecture of umbrella toxins permits a two-tiered molecular bet-hedging strategy for interbacterial antagonism

Bacteria exist in competitive and rapidly changing environments in which the nature of future threats cannot be easily predicted. Streptomyces coelicolor produces three antibacterial umbrella particles that harbor distinct polymorphic toxin domains and an overlapping set of six diversified lectins. Here, we show that the exquisite specificity of umbrella particles derives from lectin-mediated species-specific binding to previously undescribed hypervariable surface glycoconjugates. A cryo-electron microscopy (cryo-EM) structure of one such lectin in complex with its oligosaccharide substrate defines the molecular basis for targeting through the coordinated recognition of multiple glycan features. Biochemical and genetic studies of several target species, in conjunction with lectin-swapping experiments, support a model whereby S. coelicolor umbrella toxin diversification at the levels of lectin composition and toxin polymorphism represents a unique, two-tiered bet-hedging strategy. Bioinformatic analyses support this as a means by which the unusual architecture of umbrella toxins offers Streptomyces a generalizable strategy to antagonize an unpredictable array of competitors.

59 BASIC BIOLOGICAL SCIENCES

Study of Umbrella-Type Erectable Paraboloidal Solar Concentrators for Generation of Spacecraft Auxiliary Power

An investigation was made of some aspects of erectable umbrella-type paraboloidal solar-energy concentrators for use in spacecraft auxiliary power systems. An analysis is presented for the design of concentrators employing radial ribs and membrane-type coverings. The rib stiffness necessary to give a desired parabolic curvature upon erection is determined. Rib contour measurements were made in an upright and inverted position on an experimental 10-foot-diameter concentrator giving a focal length of 30.78 inches and 30.6 inches, respectively, as compared with a design focal length of 30 inches. Calorimetric tests employing spherical heat receivers showed a maximum geometrical concentrator efficiency of 75.3 percent with a concentration ratio of 92.2 at a focal length of approximately 30.5 inches. Within the scope of this investigation, it was found that, as the concentrator size increases, the weight per unit projected area increases, time to damp to one-half amplitude increases, and the natural frequency decreases. Umbrella-type solar concentrators appear to be feasible for power conversion systems using low concentration ratios; however, for large concentrators the time required to damp out disturbances may be a problem.

SPACECRAFT

Measurements and Calculations of the Effects of Distortions in the Collector Surface on Efficiencies of Umbrella-Type Solar Collectors

The meridional tensions along the ribs in a Mylar-covered umbrella-type solar collector produce a distortion in the reflecting surface that is detrimental to the image in the focal plane. The investigation reported herein was made to obtain measured and calculated geometric efficiencies of umbrella-type collectors as affected by these surface distortions. These studies show that if the tension transverse to the ribs is increased relative to the meridional tensions, the distortion is reduced and higher efficiencies can be attained, and if the transverse tension is small, the number of ribs in the collector must be increased for higher efficiencies.

Bond, Victor R.

Soil metagenomics umbrella narrative

Implementing accessible, authentic research experiences in introductory courses is challenging, particularly at institutions serving diverse student populations. To address this gap, we developed and deployed a Course-based Undergraduate Research Experience (CURE) focused on plant-microbe interactions in General Biology II at Northeastern Illinois University (NEIU), a minority-serving institution with a diverse student body. Students grew sugar beets (Beta vulgaris), extracted DNA from the rhizoplane, and used the Department of Energy Systems Biology Knowledgebase (KBase) for bioinformatic analysis to compare microbial relative abundance in fertilized versus unfertilized soil. Over five semesters, the CURE engaged 103 students and leveraged the intuitive KBase platform to make complex sequencing data accessible. Pre/post-course survey data revealed significant increases in student self-assessed research skills, including the ability to explain results and determine the types of data to collect. Furthermore, students reported significant gains in confidence related to experimental design and hypothesis development, alongside a strong increase in familiarity with KBase. Informal faculty feedback indicated high student engagement and appreciation for the real-world connections (e.g. food systems, agriculture, and health). This scalable, low-cost model effectively integrates data science tools into the foundational curriculum, demonstrating a potent strategy for boosting research skills and broadening participation in authentic scientific inquiry among diverse undergraduate students.

59 BASIC BIOLOGICAL SCIENCES

Euro-Deterrent: Analysis of Proposals for a European Nuclear Arsenal (CNSIS Paper)

The idea of a “Euro-deterrent”—a nuclear arsenal under European control and mandated to protect multiple European countries—has been proposed many times as a means for European self-defense independent of United States security guarantees under the North Atlantic Treaty Organization (NATO). This paper examines not only the concept’s multiple guises, but the reasons for their failure. It will address the idea of a Franco-British umbrella, a French umbrella, a European “pool”, and the nuclear arsenal of a hypothetical “united Europe”. Reasons for rejection largely fall into three categories: sovereignty concerns, credibility gaps, and a desire to preserve existing norms and structures. This paper concludes that the Euro-deterrent will likely remain only hypothetical unless the US unequivocally signals its intent to withdraw its nuclear umbrella from Europe, thereby forcing European countries to build a new defense arrangement.

45 MILITARY TECHNOLOGY, WEAPONRY, AND NATIONAL DEF

Development of prechamber enabled mixing-controlled combustion strategy for ultra-low methane emissions from lean burn natural gas engines

This numerical study explores the optimization of Prechamber Enabled Mixing-Controlled Combustion (PC-MCC) using natural gas in heavy-duty engines, aiming to enhance combustion efficiency to minimize methane slip and NOx emissions. The approach involves a prechamber ignition system, distinct from conventional spark ignition (SI) systems, to initiate combustion of direct injected natural gas. By leveraging the robust ignition characteristics of the prechamber, the PC-MCC method demonstrates significant potential in achieving efficient combustion akin to diesel engines but with lower greenhouse gas emissions. The research evaluates the effects of various geometric and operational parameters on the combustion process and emissions, including prechamber volume, nozzle diameter, direct injector (DI) geometry, and engine operating strategies. Computational Fluid Dynamics (CFD) simulations are utilized, focusing on a heavy-duty, single-cylinder engine modeled after the Caterpillar C9.3B engine. Key findings indicate that a prechamber volume of 3 cc, coupled with a nozzle diameter of 2.75 mm for two prechamber holes, strikes an optimal balance between combustion efficiency and emissions reduction. This configuration ensures robust combustion across a range of operating conditions while maintaining methane slip within targeted limits. Further investigation into DI geometry shows the significance of the injector umbrella angle and nozzle diameter in shaping the fuel-air mixing and combustion dynamics. An umbrella angle of 130° and a nozzle diameter of 300 microns are identified as optimal, promoting rapid and efficient combustion with minimized methane and NOx emissions. The study also investigates the impact of injection timing and pressure, highlighting their roles in controlling combustion timing and influencing emissions levels. Advanced injection timing is found to be crucial in achieving the desired low methane slip, whereas retarded injection timing assists to reduce NOx emissions while having a slight increase in methane emissions. Operating strategies incorporating various levels of Exhaust Gas Recirculation (EGR) are assessed for their effectiveness in further reducing emissions. The research demonstrates that a judicious combination of internal hot EGR and careful calibration of DI pressure and SOI timing can achieve significant reductions in NOx emissions while keeping methane slip under control. Specifically, an internal EGR level of 15%–25%, combined with DI pressures of 200–300 bar and injection timings at or after top dead center, is recommended. These findings contribute valuable insights into the development of advanced combustion techniques for natural gas engines, offering a viable pathway to reduce methane slip without compromising engine efficiency or performance. The PC-MCC system presents a promising solution for the future of heavy-duty natural gas engine technology to reduce methane emissions.

Nsaif, Osama

Technical and Community Foundations for High-Integrity CDR MRV Standards (Final Report)

The goal of this project (hereafter referred to as the “umbrella project”) was to establish cross-cutting technical foundations for carbon dioxide removal (CDR) accounting decisions. These cross-cutting and science driven technical foundations are necessary to increase trust in standards-setting and protocol development. According to key stakeholders in the industry, establishment of trusted standards is necessary to unlock and catalyze investment in the CDR industry as well as commercialization and deployment of verified, accepted high quality CDR technologies. Additionally, our umbrella project served as the lead coordinator of the cohort of three additional CDR pathway-focused projects funded under this award. In this role, we brought together the project teams to share insights, industry feedback, and approaches to CDR accounting standards development.

54 ENVIRONMENTAL SCIENCES

Power attenuation characteristics as switch-over criterion in personal satellite mobile communications

A third generation mobile system intends to support communications in all environments (i.e., outdoors, indoors at home or office and when moving). This system will integrate services that are now available in architectures such as cellular, cordless, mobile data networks, paging, including satellite services to rural areas. One way through which service integration will be made possible is by supporting a hierarchical cellular structure based on umbrella cells, macro cells, micro and pico cells. In this type of structure, satellites are part of the giant umbrella cells allowing continuous global coverage, the other cells belong to cities, neighborhoods, and buildings respectively. This does not necessarily imply that network operation of terrestrial and satellite segments interconnect to enable roaming and spectrum sharing. However, the cell concept does imply hand-off between different cell types, which may involve change of frequency. Within this propsective, the present work uses power attenuation characteristics to determine a dynamic criterion that allows smooth transition from space to terrestrial networks. The analysis includes a hybrid channel that combines Rician, Raleigh and Log Normal fading characteristics.

Castro, Jonathan P.

Space deployable domed solar concentrator with foldable panels and hinge therefor

A space deployable solar energy concentrator is formed of a dome-shaped arrangement of compactly stowable flat panel segments mounted on a collapsible, space-deployable support structure of interconnected linear components. The support structure is comprised of a plurality of tensioned, curvilinear edge strips which extend in a radial direction from a prescribed vertex of a surrounding umbrella-like framework of radially extending rib members. Between a respective pair of radially-extending, curvilinear edge strips an individual wedge-shaped panel section is formed of a plurality of multi-segment lens panel strips each of which is supported in tension between the pair of edge strips by a pair of circumferentially extending catenary cord members connected to a pair of ribs of the surrounding umbrella-like framework. A respective lens panel strip is comprised of a plurality of flat, generally rectangular-shaped, energy-directing panels arranged side-by-side in the circumferential direction of the dome. Adjacent panels are interconnected by flexible U-shaped hinges which overlap opposing edges of adjacent panels and engage respective cylindrically-shaped, load distribution bars that slide within the flexible hinges. Because each U-shaped hinge is flexible, it is permitted to shift in the circumferential direction of the panel section to facilitate stowage and deployment of the dome.

Grayson, Fred G.

Molecular Mechanisms Underlying Surfactant-Based Plastics De-Inking

Surfactant-mediated binder removal is critical for de-inking pretreatment in plastics recycling, yet the molecular mechanisms governing surfactant performance remain poorly understood. We used all-atom (AA) and coarse-grained (CG) molecular dynamics (MD) simulations alongside alkaline surfactant washing experiments to investigate interactions between a series of surfactants and a polyether urethane (PEU) binder in solution and on a polyethylene (PE) surface. Experiments reveal a range of de-inking efficiencies, ranging from <25 to >95% depending upon surfactant headgroup charge and tail length. AA simulations reveal that charged surfactants reach stable levels of surfactant coverage, while nonionic surfactants aggregate on the binder. CG umbrella sampling calculations quantify the thermodynamics of binder desorption in water. In ∼0.25 M surfactant solutions, up to a 52% reduction in the free energy barrier is computed, with trends in good agreement (R 2 = 0.92, Pearson’s r = –0.96, Spearman’s ρ = –0.83) with experimental de-inking efficiencies. We find that charged surfactants are more effective than nonionic surfactants for de-inking and propose three regimes of surfactant de-inking processes: good de-inking occurs in surfactants that promote PEU desorption with a low radius of gyration (R g ); moderate de-inking occurs when surfactants stabilize PEU but increase R g ; poor de-inking occurs in surfactants that aggregate on the binder and promote extensive anchoring to the surface. Overall, these molecular-level insights have the potential to guide the design of surfactant formulations for plastics recycling applications.

ink removal

The Observed and Projected Changes of Global Monsoons: Current Status and Future Perspectives

The global monsoon system, encompassing the Asian-Australian, African, and American monsoons, sustains two-thirds of the world’s population by regulating water resources and agriculture. Monsoon anomalies pose severe risks, including floods and droughts. Recent research associated with the implementation of the Global Monsoons Model Intercomparison Project under the umbrella of CMIP6 has advanced our understanding of its historical variability and driving mechanisms. Observational data reveal a 20th-century shift: increased rainfall pre-1950s, followed by aridification and partial recovery post-1980s, driven by both internal variability (e.g., Atlantic Multidecadal Oscillation) and external forcings (greenhouse gases, aerosols), while ENSO drives interannual variability through ocean-atmosphere interactions. Future projections under greenhouse forcing suggest long-term monsoon intensification, though regional disparities and model uncertainties persist. Models indicate robust trends but struggle to quantify extremes, where thermodynamic effects (warming-induced moisture rise) uniformly boost heavy rainfall, while dynamical shifts (circulation changes) create spatial heterogeneity. Volcanic eruptions and proposed solar radiation modification (SRM) further complicate predictions: tropical eruptions suppress monsoons, whereas high-latitude events alter cross-equatorial flows, highlighting unresolved feedbacks. The emergent constraint approach is booming in terms of correcting future projections and reducing uncertainty with respect to the global monsoons. Critical challenges remain. Model biases and sparse 20th-century observational data hinder accurate attribution. The interplay between natural variability and anthropogenic forcings, along with nonlinear extreme precipitation risks under warming, demands deeper mechanistic insights. Additionally, SRM’s regional impacts and hemispheric monsoon interactions require systematic evaluation. Addressing these gaps necessitates enhanced observational networks, refined climate models, and interdisciplinary efforts to disentangle multiscale drivers, ultimately improving resilience strategies for monsoon-dependent regions.

climate extreme events

A terminology for scientific workflow systems

The term “scientific workflow” has evolved over the last two decades to encompass a broad range of compositions of interdependent compute tasks and data movements. It has also become an umbrella term for processing in modern scientific applications. Today, many scientific applications can be considered as workflows made of multiple dependent steps, and hundreds of workflow systems have been developed to manage and run these scientific workflows. However, no turnkey solution has emerged from the field to address the diversity of scientific processes and the infrastructure on which they are supposed to be implemented. Instead, new research problems requiring the execution of scientific workflows with some novel feature often lead to the development of an entirely new workflow system. A direct consequence of this situation is that many existing workflow management systems (WMSs) share some salient features, offer similar functionalities, and can manage the same categories of workflows but at the same time also have some distinct capabilities that can be important for specific applications. This situation makes researchers who develop workflows face the complex question of selecting a WMS. This selection can be driven by technical considerations, to find the system that is the most appropriate for their application and for the computing and storage resources available to them, or other factors such as reputation, adoption, strong community support, or long-term sustainability. To address this problem, a group of WMS developers and practitioners joined their efforts to produce a community-based terminology of WMSs. This paper summarizes their findings and introduces this new terminology to characterize WMSs. Furthermore, this terminology is composed of fives axes: workflow structure and characteristics, composition, orchestration, data management, and metadata capture. Each axis comprises several concepts that capture the prominent features of WMSs. Based on this terminology, this paper also presents a classification of 23 existing WMSs according to the proposed axes and terms.

Community-based terminology

Synergistic learning with multi-task DeepONet for efficient PDE problem solving

Multi-task learning (MTL) is an inductive transfer mechanism designed to leverage useful information from multiple tasks to improve generalization performance compared to single-task learning. It has been extensively explored in traditional machine learning to address issues such as data sparsity and overfitting in neural networks. In this work, we apply MTL to problems in science and engineering governed by partial differential equations (PDEs). However, implementing MTL in this context is complex, as it requires task-specific modifications to accommodate various scenarios representing different physical processes. To this end, we present a multi-task deep operator network (MT-DeepONet) to learn solutions across various functional forms of source terms in a PDE and multiple geometries in a single concurrent training session. We introduce modifications in the branch network of the vanilla DeepONet to account for various functional forms of a parameterized coefficient in a PDE. Additionally, we handle parameterized geometries by introducing a binary mask in the branch network and incorporating it into the loss term to improve convergence and generalization to new geometry tasks. Our approach is demonstrated on three benchmark problems: (1) learning different functional forms of the source term in the Fisher equation; (2) learning multiple geometries in a 2D Darcy Flow problem and showcasing better transfer learning capabilities to new geometries; and (3) learning 3D parameterized geometries for a heat transfer problem and demonstrate the ability to predict on new but similar geometries. Finally, our MT-DeepONet framework offers a novel approach to solving PDE problems in engineering and science under a unified umbrella based on synergistic learning that reduces the overall training cost for neural operators.

42 ENGINEERING

Review of neutral naturalness

The hierarchy between the mass parameter of the Higgs boson and larger mass scales becomes ever more puzzling as experiments explore higher energies. Neutral naturalness is the umbrella term for symmetry-based explanations for these hierarchies whose quark symmetry partners are not charged under the SU(3) c color gauge group of the Standard Model. Though the first manifestations of this idea predate the physics runs of the Large Hadron Collider, since the Higgs discovery this paradigm has grown and developed to include a wide variety of concrete realizations with connections to intriguing collider signals. Determining the phenomenology of such models often requires the characterization—typically relying on lattice calculations—of a new confining gauge symmetry. This presents additional motivation to further develop our understanding of nonperturbative field theory as well as to pursue specific lattice studies. The wide range of suggested hidden sectors also produces a variety of dark matter candidates, intersections with astrophysics and cosmology, and ties to neutrinos and flavor. In this review, we orient the reader within both this growing collection of specific models and the physical phenomena they produce. We also survey the often less familiar dynamics of hidden-sector glueballs and quirks. In addition to providing a guide to past efforts, we reveal interesting directions for further study.

Batell, Brian [Univ. of Pittsburgh, PA (United Sta

Molecular Modeling and Molecular Dynamics Simulation of a Packed and Intact Bacterial Microcompartment

Bacterial microcompartments (BMCs) are protein-bound organelles found in some bacteria which encapsulate enzymes for enhanced catalytic activity. These compartments spatially sequester enzymes within semipermeable shell proteins and are packed full of enzyme cargoes and metabolites as they fulfill their function. Coupling together recent SAXS and proteomics work, it is possible to develop molecular models for these microcompartments and interrogate enzyme and metabolite dynamics within. Our primary goal of this study is to quantify the permeability of metabolite glyceraldehyde-3-phosphate (G3P) and dihydroxyacetone phosphate (DHAP) across the BMC shell through classical molecular dynamics simulation. The Haliangium ochraceum model of BMC shell (PDB: 6MZX) was used to model an intact BMC of approximately 10 million atoms. Working at this scale presented its own challenges in managing large data sets, with multiple challenges and hardware advances discussed that facilitated this work. Over approximately 750 ns of aggregate simulation, we see multiple permeation events for these metabolites that were added at high concentration through the pores present within BMC shell tiles. When compared to independent permeability estimates for the same metabolites determined through replica exchange umbrella sampling simulations, the permeabilities varied by approximately 3 orders of magnitude. Regardless, the permeability coefficients for both G3P and DHAP are highly similar and very high, such that only very small concentration gradients can be maintained across the BMC shell between the cytosol and BMC interior. The large simulation systems also facilitated comparisons for molecular diffusivity in the crowded environment within the BMC shell. By our estimates, the viscosity within a packed BMC shell is at least 10-fold higher than it would be in neat solution and is the real driver for varying permeability estimates we obtained through simulation. These findings will be used as design inputs for future bioengineering efforts to make products from BMCs, highlighting how permeable BMC shells can be.

Diffusion

Imaging Three-Dimensional Molecular Structure and Dynamics with Multiparticle Covariance and Cumulant Coulomb Explosion Analysis

Coulomb explosion imaging (CEI) provides a direct means of imaging molecular geometry by correlating fragment ion momenta following the fragmentation of a molecular polycation. Here, we demonstrate the use of three-body covariance and four-body cumulant analysis to extract three-dimensional (3D) structural information from the X-ray-induced Coulomb explosion of tert-butyl iodide (C4H9I). Site-selective ionization at the iodine 4d edge with intense femtosecond soft X-ray pulses from an X-ray free-electron laser (XFEL) enables rapid charge buildup and molecular breakup. By correlating ionic fragments in the molecular frame, we isolate complete dissociation channels and reveal subtle structural changes, such as umbrella-type motion of the branched alkyl chain, during the ionization process. Comparison with point-charge simulations of the Coulomb explosion shows close agreement, validating the approach. Furthermore, these results establish covariance/cumulant mapping as a powerful strategy for imaging complex three-dimensional molecular structures and point the way toward time-resolved CEI using both XFEL and tabletop sources for capturing ultrafast structural dynamics.

Imaging