Search NASA⌕ Search

SEARCH · Search NASA

Results for “vectorization”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 19 records

A short hepatitis C virus NS5A peptide expression by AAV vector modulates human T cell activation and reduces vector immunogenicity

Viral vector-mediated gene therapies have the potential to treat many human diseases; however, host immune responses against the vector and/or the transgene pose a safety risk to the patients and can negatively impact product efficacy. Thus, novel strategies to reduce vector immunogenicity are critical for the advancement of these therapies. T cell activation (TCA) is required for the development of immune responses during gene therapy. We hypothesized that modulation of TCA by incorporating a novel viral immunomodulatory factor into a viral vector may reduce unwanted TCA and immune responses during gene therapy. To test this hypothesis, we identified an immunomodulatory domain of the hepatitis C virus (HCV) NS protein 5A (NS5A) protein and studied the effect of viral vectors expressing NS5A peptide on TCA. Lentiviral vector-mediated expression of a short 20-mer peptide derived from the NS5A protein in human T cells was sufficient to inhibit TCA. Synthetic 20-mer NS5A peptide also inhibited TCA in primary human T cells. Mechanistically, the NS5A protein interacted with Lck and inhibited proximal TCR signaling. Importantly, NS5A peptide expression did not cause global T cell signaling dysfunction as distal T cell signaling was not inhibited. Finally, recombinant adeno-associated virus (AAV) vector expressing the 20-mer NS5A peptide reduced both the recall antigen and the TCR-mediated activation of human T cells and did not cause global T cell signaling dysfunction. Together, these data suggest that expression of a 20-mer NS5A peptide by an AAV vector may reduce unwanted TCA and may contribute to lower vector immunogenicity during gene therapy.

59 BASIC BIOLOGICAL SCIENCES↗

Wave vector and field vector orientation dependence of Fe K pre-edge X-ray absorption features in clinopyroxenes

Abstract Pre-edge X-ray absorption features are commonly used to derive redox states for transition metal oxides in crystals and glasses. Several calibrations for Fe2+ and Fe3+ in silicate glasses have utilized the general relationships among pre-edge peak intensity, energy, and redox state. However, absorption variations complicate those relationships in anisotropic crystals. Although absorption anisotropy at and above the energy of the rising edge adheres to the typical cos2 relationship observed in absorption spectroscopies at other energies, the anisotropy of the pre-edge is far more complicated. Prior studies focusing on pre-edge absorption anisotropy demonstrate a 1-cos4φ dependence of absorption magnitudes with rotation. Experiments presented here show that absorption magnitudes of the pre-edge vary as a function of both electric field vector orientation and wave vector direction. However, rotations around the field vector axis or wave vector axis individually result in cos2 dependence of absorption magnitudes. Rotations where both wave vector and field vector orientation are varied are not well fit by either model in the pre-edge. The resulting anisotropy complicates the process of measuring characteristic absorption in the pre-edge, making valence state determinations challenging for strongly anisotropic crystal structures such as pyroxene.

Geochemistry & Geophysics↗

A Digital Three Level Space Vector Modulator for High Frequency Vector Sequence Generation

This letter proposes a digital high-speed three-level space vector pulse width modulator (3L-SVPWM). A conventional 3L-SVPWM is typically computation-based, involving a sequential execution of sub-tasks on a digital signal processor (DSP) based controller. The resulting high computation time of 5.4 μs limits the implementation of additional control blocks for switching frequencies greater than 100 kHz. This is overcome by transforming sub-tasks into digital blocks with 1-0 decisions and simpler arithmetic operations. The sub-task blocks are executed concurrently on a programmable logic device (PLD). Hence, a fast 3L-SVPWM execution in 140 ns is achieved. The proposed digital 3L-SVPWM enables high switching frequency operation of wide bandgap (WBG) device-based 3 L inverters to generate high fundamental frequency waveforms. A finite state machine is an integral part of the proposed implementation with the ability to generate any vector sequence, maximizing the usage of redundant vector states in 3L-SVPWM. Here, the proposed digital 3L-SVPWM operation is demonstrated with a GaN-based 3 L active neutral point clamped (3L-ANPC) inverter. Experimental results are presented at 250 kHz switching frequency to generate vector sequences for center-aligned SVPWM (CA-SVPWM) and common mode voltage reduced SVPWM (CMVR-SVPWM). The results also showcase a high fundamental frequency generation capability of 10 kHz.

active neutral point clamped inverter↗

Radial coordinate maps, radial vectors, and binormal vectors for 5/6, 5/5 and 5/4 edge island domains in W7-X

Abstract The edge island domain in Wendelstein 7-X consists of divertor islands whose position coincide with the location of rational values of the rotational transform - ι ≈ ( 5 / 6 , 5 / 5 , 5 / 4 ) and surround the main confinement volume (the ‘main plasma’), providing the magnetic topology for an island divertor. The 5/5 edge consists of five individual islands that are unconnected. In contrast, a single island connects onto itself after 6 or 4 toroidal transits in the 5/6 or 5/4 edge, respectively. Many interesting phenomena are related to these islands and diagnostic analyses require a mapping from ‘laboratory’ or real space coordinates to the island coordinate system (ICS). A procedure is described here to calculate several scalar and vector quantities for closed island structures which can be utilized in fast interpolation schemes for inverse maps. For the 5/5 edge, a fixed-boundary vacuum (zero beta) magneto-hydrodynamic solution of the 5/5 island is found with the Variational Moments Equilibrium Code, VMEC. The solution is compatible with already existing routines which determine the radial and binormal vectors of VMEC solutions at arbitrary laboratory coordinates. VMEC does not support solutions for the 5/4 and 5/6 islands, but the radial and binormal vectors are available in a local 2D Fourier ICS.

Physics↗

Search for charged Higgs bosons produced in vector boson fusion processes and decaying into vector boson pairs in proton–proton collisions at $\sqrt{s} = 13\,{\text {TeV}} $

A search for charged Higgs bosons produced in vector boson fusion processes and decaying into vector bosons, using proton–proton collisions at √s = 13 TeV at the LHC, is reported. The data sample corresponds to an integrated luminosity of 137 fb -1 collected with the CMS detector. Events are selected by requiring two or three electrons or muons, moderate missing transverse momentum, and two jets with a large rapidity separation and a large dijet mass. No excess of events with respect to the standard model background predictions is observed. Model independent upper limits at 95% confidence level are reported on the product of the cross section and branching fraction for vector boson fusion production of charged Higgs bosons as a function of mass, from 200 to 3000GeV. The results are interpreted in the context of the Georgi–Machacek model.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Review of searches for vector-like quarks, vector-like leptons, and heavy neutral leptons in proton-proton collisions at $\sqrt{s}$ = 13 TeV at the CMS experiment

The LHC has provided an unprecedented amount of proton-proton collision data, bringing forth exciting opportunities to address fundamental open questions in particle physics. These questions can potentially be answered by performing searches for very rare processes predicted by models that attempt to extend the standard model of particle physics. The data collected by the CMS experiment in 2015-2018 at a center-of-mass energy of 13 TeV can be used to test the standard model with high precision and potentially uncover evidence for new particles or interactions. An interesting possibility is the existence of new fermions with masses ranging from the MeV to the TeV scale. Such new particles appear in many possible extensions of the standard model and are well motivated theoretically. New fermions may explain the appearance of three generations of leptons and quarks, the mass hierarchy across the generations, and the nonzero neutrino masses. In this report, the results of searches targeting vector-like quarks, vector-like leptons, and heavy neutral leptons at the CMS experiment are summarized. The complementarity of current searches for each type of new fermion is discussed, and combinations of several searches for vector-like quarks are presented. The discovery potential for some of these searches at the High-Luminosity LHC is also discussed.

FOS: Physical sciences↗

Review of searches for vector-like quarks, vector-like leptons, and heavy neutral leptons in proton–proton collisions at $\sqrt{s} = 13$ TeV at the CMS experiment

The LHC has provided an unprecedented amount of proton–proton collision data, bringing forth exciting opportunities to address fundamental open questions in particle physics. These questions can potentially be answered by performing searches for very rare processes predicted by models that attempt to extend the standard model of particle physics. The data collected by the CMS experiment in 2015–2018 at a center-of-mass energy of 13 TeV can be used to test the standard model with high precision and potentially uncover evidence for new particles or interactions. An interesting possibility is the existence of new fermions with masses ranging from the MeV to the TeV scale. Such new particles appear in many possible extensions of the standard model and are well motivated theoretically. New fermions may explain the appearance of three generations of leptons and quarks, the mass hierarchy across these generations, and the nonzero neutrino masses. In this report, the results of searches targeting vectorlike quarks, vector-like leptons, and heavy neutral leptons at the CMS experiment are summarized. The complementarity of current searches for each type of new fermion is discussed, and combinations of several searches for vector-like quarks are presented. The discovery potential for some of these searches at the High-Luminosity LHC is also discussed.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Search for Associated Production of a Higgs Boson and Two Vector Bosons via Vector-Boson Scattering at s = 13 TeV

A search for Higgs boson ( H ) production in association with two vector bosons ( V = W , Z ) via vector-boson scattering (VBS) is presented using proton-proton collision data collected at s = 13 TeV by the CMS experiment, corresponding to an integrated luminosity of 138 fb - 1 . Events containing two forward jets consistent with VBS, a large-radius jet from the decay of a boosted H to a pair of b quarks, and zero, one, or two charged leptons coming from V decays are selected. The process is excluded at 95% confidence level for observed (expected) values of the V V H H coupling modifier κ 2 V outside the interval 0.40 < κ 2 V < 1.60 ( 0.34 < κ 2 V < 1.66 ), assuming standard model values for all other couplings, thus establishing a novel probe of the V V H H interaction. Constraints are also set on the individual κ 2 W and κ 2 Z coupling modifiers and on the allowed region in the κ 2 W - κ 2 Z plane.

Hayrapetyan, Aram [Yerevan Phys. Inst.]↗

Measurements of Higgs boson production by gluon-gluon fusion and vector-boson fusion using and vector-boson using $H$ → $WW*$ → $evμv$ decays in $pp$ collisions at $\sqrt{s}$ = 13 TeV with the ATLAS detector

Higgs boson production via gluon-gluon fusion and vector-boson fusion in proton-proton collisions is measured in the $H$ → $WW*$ → $evμv$ decay channel. The Large Hadron Collider delivered proton-proton collisions at a center-of-mass energy of 13 TeV between 2015 and 2018, which were recorded by the ATLAS detector, corresponding to an integrated luminosity of 139 fb -1 . The total cross sections for Higgs boson production by gluon-gluon fusion and vector-boson fusion times the $H$ $\rightarrow$ $WW$* branching ratio are measured to be 12.0 ± 1.4 and ${0.75}_{- 0.16}^{+ 0.19}$ pb, respectively, in agreement with the Standard Model predictions of 10.4 ± 0.6 and 0.81 ± 0.02 pb. Higgs boson production is further characterized through measurements of Simplified Template Cross Sections in a total of 11 kinematic fiducial regions.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

A search for decays of the Higgs boson to invisible particles in events with a top-antitop quark pair or a vector boson in proton-proton collisions at $$\sqrt{s} = 13\,\text {Te}\hspace{-.08em}\text {V} $$

A search for decays to invisible particles of Higgs bosons produced in association with a top-antitop quark pair or a vector boson, which both decay to a fully hadronic final state, has been performed using proton-proton collision data collected at $\sqrt{s} = 13$ TeV by the CMS experiment at the LHC, corresponding to an integrated luminosity of 138fb -1 . The 95% confidence level upper limit set on the branching fraction of the 125 GeV Higgs boson to invisible particles, B(H → inv), is 0.54 (0.39 expected), assuming standard model production cross sections. The results of this analysis are combined with previous B(H → inv) searches carried out at $\sqrt{s} = 7$, 8, and 13 TeV in complementary production modes. The combined upper limit at 95% confidence level on B(H → inv) is 0.15 (0.08 expected).

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Binding of adenovirus species C hexon to prothrombin and the influence of hexon on vector properties in vitro and in vivo

The majority of adenovirus (Ad) vectors are based on human Ad type 5, which is a member of Ad species C. Species C also includes the closely-related types 1, 2, 6, 57 and 89. It is known that coagulation factors bind to Ad5 hexon and play a key role in the liver tropism of Ad5 vectors, but it is unclear how coagulation factors affect vectors derived from other species C Ads. We evaluated species C Ad vectors both in vitro and following intravenous injection in mice. To assess the impact of hexon differences, we constructed chimeric Ad5 vectors that contain the hexon hypervariable regions from other species C types, including vectors with hexon mutations that decreased coagulation factor binding. After intravenous injection into mice, vectors with Ad5 or Ad6 hexon had strong liver tropism, while vectors with chimeric hexon from other Ad types had weaker liver tropism due to inhibition by natural antibodies and complement. In addition, we discovered a novel ability of hexon to bind prothrombin, which is the most abundant coagulation factor in blood, and we found striking differences in the affinity of Ads for human, mouse and bovine coagulation factors. When compared to Ad5, vectors with non-Ad5 species C hexons had considerably higher affinity for both human and mouse prothrombin. Most of the vectors tested were strongly dependent on coagulation factors for liver transduction, but vectors with chimeric Ad6 hexon showed much less dependence on coagulation factors than other vectors. We found that in vitro neutralization experiments with mouse serum predicted in vivo behavior of Ad5 vectors, but in vitro experiments did not predict the in vivo behavior of vectors based on other Ad types. In sum, hexons from different human Ad species C viruses confer diverse properties on vectors, including differing abilities to target the liver.

Tian, Jie↗

Versatile allelic replacement and self-excising integrative vectors for plasmid genome mutation and complementation

ABSTRACT The ability to better understand the function of proteins expressed by bacteria has typically relied upon the development of genetic mutant strains. This approach has been especially challenging for plasmid-encoded genes, as most of the previously described allelic replacement vectors are inefficient for plasmid genome mutation as they either rely on plasmid-derived counterselection toxins or depend on other strategies suchsacB,tetA, andrpsLwhich have been proven to be less efficient for mutant selection. Integrative vectors lack chromophore indicators, thus requiring laborious screening or excision of the vector’s backbone relies on the introduction of a flippase (FLP)-expressing plasmid. The allelic replacement vector, designated here as pDG1, expresses an X-Gal hydrolyzing enzyme (BgaB) that can be used for blue/white screening allowing identification of colonies that integrated and successfully removed the mutagenesis plasmid without a bias for those still carrying it. pDG1 was further improved by including the rhamnose-inducible Tse2 toxin as a potent counterselection system. The efficacy of pDG1 was validated by deleting portions of the plasmid-encoded VirB4/D4 type IV secretion system and aerobactin-synthesizing operons inSalmonella enterica. The integrative vectors, which contain an ΦC31attPsite and genes encoding ΦC31 integrase (int), can seamlessly integrate to target ΦC31attBonSalmonellaplasmids or chromosome. These vectors were improved by insertingbgaBand FLP-encoding genes so that, following integration, most of the vector’s backbone encompassingint,bgaB, and FLP genes can be excised by FLP, without the need for another FLP-expressing vector, creating white colonies carrying a stably integrated target gene. As such, we were able to integrate a 9.3-kb DNA fragment toSalmonellachromosome and flipped out most of the integrated vector in one step, leaving the target fragment in the chromosome. IMPORTANCE In spite of the dissemination of multidrug-resistant plasmids among Gram-negative pathogens, including those carrying virulence genes, vector tools for studying plasmid-born genes are lacking. The allelic replacement vectors can be used to generate plasmid or chromosomal mutations including markless point mutations. This is the first report describing a self-excising integrative vector that can be used as a stable single-copy complementing tool to study medically important pathogens includingin vivostudies without the need for antibiotic selection. Overall, our newly developed vectors can be applied for the assessment of the function of plasmid-encoded genes by specifically creating mutations, moving large operons between plasmids and to/from the chromosome, and complementing phenotypes associated with gene mutation. Furthermore, the vectors express chromophores for the detection of target gene modification or colony isolation, avoiding time-consuming screening procedures.

Microbiology↗

Real space iterative reconstruction for vector tomography (RESIRE-V)

Tomography has had an important impact on the physical, biological, and medical sciences. To date, most tomographic applications have been focused on 3D scalar reconstructions. However, in some crucial applications, vector tomography is required to reconstruct 3D vector fields such as the electric and magnetic fields. Over the years, several vector tomography methods have been developed. Here, we present the mathematical foundation and algorithmic implementation of REal Space Iterative REconstruction for Vector tomography, termed RESIRE-V. RESIRE-V uses multiple tilt series of projections and iterates between the projections and a 3D reconstruction. Each iteration consists of a forward step using the Radon transform and a backward step using its transpose, then updates the object via gradient descent. Incorporating with a 3D support constraint, the algorithm iteratively minimizes an error metric, defined as the difference between the measured and calculated projections. The algorithm can also be used to refine the tilt angles and further improve the 3D reconstruction. To validate RESIRE-V, we first apply it to a simulated data set of the 3D magnetization vector field, consisting of two orthogonal tilt series, each with a missing wedge. Our quantitative analysis shows that the three components of the reconstructed magnetization vector field agree well with the ground-truth counterparts. We then use RESIRE-V to reconstruct the 3D magnetization vector field of a ferromagnetic meta-lattice consisting of three tilt series. Our 3D vector reconstruction reveals the existence of topological magnetic defects with positive and negative charges. We expect that RESIRE-V can be incorporated into different imaging modalities as a general vector tomography method. To make the algorithm accessible to a broad user community, we have made our RESIRE-V MATLAB source codes and the data freely available at https://github.com/minhpham0309/RESIRE-V.

47 OTHER INSTRUMENTATION↗

Improving the accuracy of discretisations of the vector transport equation on the lowest-order quadrilateral Raviart-Thomas finite elements

Within finite element models of fluids, vector-valued fields such as velocity or momentum variables are commonly discretised using the Raviart-Thomas elements. However, when using the lowest-order quadrilateral Raviart-Thomas elements, standard finite element discretisations of the vector transport equation typically have a low order of spatial accuracy. This paper describes two schemes that improve the accuracy of transporting such vector-valued fields on two-dimensional curved manifolds. The first scheme that is presented reconstructs the transported field in a higher-order function space, where the transport equation is then solved. The second scheme applies a mixed finite element formulation to the vector transport equation, simultaneously solving for the transported field and its vorticity. In this work, an approach to stabilising this mixed vector-vorticity formulation is presented that uses a Streamline Upwind Petrov-Galerkin (SUPG) method. These schemes are then demonstrated, along with their accuracy properties, through some numerical tests. Two new test cases are used to assess the transport of vector-valued fields on curved manifolds, solving the vector transport equation in isolation. The improvement of the schemes is also shown through two standard test cases for rotating shallow-water models.

97 MATHEMATICS AND COMPUTING↗

The development of Gibbs's dyadic and implications for the gradient of a vector field

In this paper, we review the history of the dyadic as developed by Gibbs. This mathematical construct appeared in the second part of Gibbs's pamphlet on vector analysis (published in 1884), and it represented the first known development of a Cartesian theory of tensors. Gibbs made extensive use of the dyadic to express his theory of linear vector functions, that is, functions that acted on vectors and mapped them to new vectors. The dyadic proved to be a capable vehicle in Gibbs's hands, and his theory for dyadics (which we would now call second-order Cartesian tensors) was relatively advanced. The theory detailed notions such as the decomposition of vectors and conditions under which a tensor would have an inverse. While Gibbs's theory for linear operators expressed by dyadics was robust, it did not seem to garner the attention that the more conventional vector analysis (published in the first half of his pamphlet in 1881) did. Perhaps in part because of the general unfamiliarity with the dyadic, two distinct and conflicting definitions of the gradient of a vector field have arisen in the literature. The details of these differences in notation, possible reasons for the difference, and a potential resolution are proposed.

97 MATHEMATICS AND COMPUTING↗

Episomal DNA vectors for plant genetic engineering

This disclosure pertains to a novel platform for genetic engineering of chloroplasts. The disclosure provides episomal DNA vectors containing a chloroplast origin of replication. These vectors remain extra-plastomic and sustainably and autonomously replicate in chloroplasts of the plant cells transformed with the vectors and in the plants regenerated from the transformed plant cells. The episomal DNA vectors do not contain any sequence that shares sequence homology with the plastome DNA and, thus, do not get integrated into the plastome DNA. The vectors can also comprise one or more genes of interest that confer desirable characteristics to the transformed plant cells. The disclosure also provides methods of transforming plant cells with the episomal DNA vectors and regenerating from the transformed plant cells plants having desirable characteristics. The vectors and methods disclosed herein provide a significant advancement in speed, flexibility, and prospects of introducing genes into plant cells for effective metabolic engineering.

Lenaghan, Scott C.↗

Vectorization of CMSSW offline software

The CMS experiment has been utilizing vectorization, or SIMD, in parts of its data processing applications for over a decade. On x86 platforms the vectorization level is still SSE3. In the past attempts to use wider vector instruction sets such as AVX or AVX-512 have, in practice, not resulted in improvements in the overall event processing throughput, because the CPUs scale down their frequency when processing AVX instructions. In addition, a notable part of the global pool of CMS’ resources has been old systems either not supporting AVX, or where the CPU frequency downscaling impacts all cores of the CPU. CMS has nevertheless continued to vectorize more of its application code, and in this work we review profiling methods we have found effective to find out pieces of code that would benefit from vectorization, and techniques to transform those codes such that the GCC compiler is able to auto-vectorize those codes. The build system used for CMSSW, Scram, has also been enha nced to be able to build code for multiple CPU microarchitectures such that the shared libraries of desired microarchitecture level can be loaded based on the CPU of the system. This multi-microarchitecture setup is invisible to the workflow management system, which makes its deployment straightforward. We describe in detail how this multi-microarchitecture build is set up, and measure the impact of using wider vector units than SSE3 on the event processing throughput of CMS applications such as simulation and reconstruction on recent x86 CPUs.

Gartung, Patrick↗

Towards a Unified theory of Fractional and Nonlocal Vector Calculus

Nonlocal and fractional-order models capture effects that classical partial differential equations cannot describe; for this reason, they are suitable for a broad class of engineering and scientific applications that feature multiscale or anomalous behavior. This has driven a desire for a vector calculus that includes nonlocal and fractional gradient, divergence and Laplacian type operators, as well as tools such as Green’s identities, to model subsurface transport, turbulence, and conservation laws. In the literature, several independent definitions and theories of nonlocal and fractional vector calculus have been put forward. Some have been studied rigorously and in depth, while others have been introduced ad-hoc for specific applications. The goal of this work is to provide foundations for a unified vector calculus by (1) consolidating fractional vector calculus as a special case of nonlocal vector calculus, (2) relating unweighted and weighted Laplacian operators by introducing an equivalence kernel, and (3) proving a form of Green’s identity to unify the corresponding variational frameworks for the resulting nonlocal volume-constrained problems. Here, the proposed framework goes beyond the analysis of nonlocal equations by supporting new model discovery, establishing theory and interpretation for a broad class of operators, and providing useful analogues of standard tools from the classical vector calculus.

97 MATHEMATICS AND COMPUTING↗