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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2021

Mutations that confer resistance to broadly-neutralizing antibodies define HIV-1 variants of transmitting mothers from that of non-transmitting mothers

Despite considerable reduction of mother-to-child transmission (MTCT) of HIV through use of maternal and infant antiretroviral therapy (ART), over 150,000 infants continue to become infected with HIV annually, falling far short of the World Health Organization goal of reaching <20,000 annual pediatric HIV cases worldwide by 2020. Prior to the widespread use of ART in the setting of pregnancy, over half of infants born to HIV-infected mothers were protected against HIV acquisition. Yet, the role of maternal immune factors in this protection against vertical transmission is still unclear, hampering the development of synergistic strategies to further reduce MTCT. It has been established that infant transmitted/founder (T/F) viruses are often resistant to maternal plasma, yet it is unknown if the neutralization resistance profile of circulating viruses predicts the maternal risk of transmission to her infant. In this study, we amplified HIV-1 envelope genes ( env ) by single genome amplification and produced representative Env variants from plasma of 19 non-transmitting mothers from the U.S. Women Infant Transmission Study (WITS), enrolled in the pre-ART era. Maternal HIV Env variants from non-transmitting mothers had similar sensitivity to autologous plasma as observed for non-transmitting variants from transmitting mothers. In contrast, infant variants were on average 30% less sensitive to paired plasma neutralization compared to non-transmitted maternal variants from both transmitting and non-transmitting mothers (p = 0.015). Importantly, a signature sequence analysis revealed that motifs enriched in env sequences from transmitting mothers were associated with broadly neutralizing antibody (bnAb) resistance. Altogether, our findings suggest that circulating maternal virus resistance to bnAb-mediated neutralization, but not autologous plasma neutralization, near the time of delivery, predicts increased MTCT risk. These results caution that enhancement of maternal plasma neutralization through passive or active vaccination during pregnancy may potentially drive the evolution of variants fit for vertical transmission.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1974

Applications of tunable high energy/pressure pulsed lasers to atmospheric transmission and remote sensing

Atmospheric transmission of high energy C12 O2(16) lasers were improved by pulsed high pressure operation which, due to pressure broadening of laser lines, permits tuning the laser 'off' atmospheric C12 O2(16) absorption lines. Pronounced improvement is shown for horizontal transmission at altitudes above several kilometers, and for vertical transmission through the entire atmosphere. The atmospheric transmission of tuned C12 O2(16) lasers compares favorably with C12 O2(18) isotope lasers and CO lasers. The advantages of tunable, high energy, high pressure pulsed lasers over tunable diode lasers and waveguide lasers, in combining high energies with a large tuning range, are evaluated for certain applications to remote sensing of atmospheric constituents and pollutants. Pulsed operation considerably increases the signal to noise ratio without seriously affecting the high spectral resolution of signal detection obtained with laser heterodyning.

Hess, R. V.↗
NASA NTRS1976

Tunable high pressure lasers

Atmospheric transmission of high energy CO2 lasers is considerably improved by high pressure operation which, due to pressure broadening, permits tuning the laser lines off atmospheric absorption lines. Pronounced improvement is shown for horizontal transmission at altitudes above several kilometers and for vertical transmission through the entire atmosphere. Applications of tunable high pressure CO2 lasers to energy transmission and to remote sensing are discussed along with initial efforts in tuning high pressure CO2 lasers.

Hess, R. V.↗
DOE OSTI2021

Different evolutionary pathways of HIV-1 between fetus and mother perinatal transmission pairs indicate unique immune selection in fetuses

Study of evolution and selection pressure on HIV-1 in fetuses will lead to a better understanding of the role of immune responses in shaping virus evolution and vertical transmission. Detailed genetic analyses of HIV-1 env gene from 12 in utero transmission pairs show that most infections (67%) occur within 2 months of childbirth. In addition, the env sequences from long-term-infected fetuses are highly divergent and form separate phylogenetic lineages from their cognate maternal viruses. Host-selection sites unique to neonate viruses are identified in regions frequently targeted by neutralizing antibodies and T cell immune responses. Identification of unique selection sites in the env gene of fetal viruses indicates that the immune system in fetuses is capable of exerting selection pressure on viral evolution. Studying selection and evolution of HIV-1 or other viruses in fetuses can be an alternative approach to investigate adaptive immunity in fetuses.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2023

Convergent reductive evolution and host adaptation in Mycoavidus bacterial endosymbionts of Mortierellaceae fungi

Intimate associations between fungi and intracellular bacterial endosymbionts are becoming increasingly well understood. Phylogenetic analyses demonstrate that bacterial endosymbionts of Mucoromycota fungi are related either to free-living Burkholderia or Mollicutes species. The so-called Burkholderia-related endosymbionts or BRE comprise Mycoavidus, Mycetohabitans and Candidatus Glomeribacter gigasporarum. These endosymbionts are marked by genome contraction thought to be associated with intracellular selection. However, the conclusions drawn thus far are based on a very small subset of endosymbiont genomes, and the mechanisms leading to genome streamlining are not well understood. The purpose of this study was to better understand how intracellular existence shapes Mycoavidus and BRE functionally at the genome level. To this end we generated and analyzed 14 novel draft genomes for Mycoavidus living within the hyphae of Mortierellomycotina fungi. We found that our novel Mycoavidus genomes were significantly reduced compared to free-living Burkholderiales relatives. Using a genome-scale phylogenetic approach including the novel and available existing genomes of Mycoavidus, we show that the genus is an assemblage composed of two independently derived lineages including three well supported clades of Mycoavidus. Using a comparative genomic approach, we shed light on the functional implications of genome reduction, documenting shared and unique gene loss patterns between the three Mycoavidus clades. We found that many endosymbiont isolates demonstrate patterns of vertical transmission and host-specificity, but others are present in phylogenetically disparate hosts. We discuss how reductive evolution and host specificity reflect convergent adaptation to the intrahyphal selective landscape, and commonalities of eukaryotic endosymbiont genome evolution.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Transcriptome Dynamics of the Inflorescence in Reciprocally Formed Allopolyploid Tragopogon miscellus (Asteraceae)

Polyploidy is an important evolutionary mechanism and is prevalent among land plants. Most polyploid species examined have multiple origins, which provide genetic diversity and may enhance the success of polyploids. In some polyploids, recurrent origins can result from reciprocal crosses between the same diploid progenitors. Although great progress has been made in understanding the genetic consequences of polyploidy, the genetic implications of reciprocal polyploidization remain poorly understood, especially in natural polyploids. Tragopogon (Asteraceae) has become an evolutionary model system for studies of recent and recurrent polyploidy. Allotetraploid T. miscellus has formed reciprocally in nature with resultant distinctive floral and inflorescence morphologies (i.e., short- vs. long-liguled forms). In this study, we performed comparative inflorescence transcriptome analyses of reciprocally formed T. miscellus and its diploid parents, T. dubius and T. pratensis. In both forms of T. miscellus, homeolog expression of ~70% of the loci showed vertical transmission of the parental expression patterns (i.e., parental legacy), and ~20% of the loci showed biased homeolog expression, which was unbalanced toward T. pratensis. However, 17.9% of orthologous pairs showed different homeolog expression patterns between the two forms of T. miscellus. No clear effect of cytonuclear interaction on biased expression of the maternal homeolog was found. In terms of the total expression level of the homeologs studied, 22.6% and 16.2% of the loci displayed non-additive expression in short- and long-liguled T. miscellus, respectively. Unbalanced expression level dominance toward T. pratensis was observed in both forms of T. miscellus. Significantly, genes annotated as being involved in pectin catabolic processes were highly expressed in long-liguled T. miscellus relative to the short-liguled form, and the majority of these differentially expressed genes were transgressively down-regulated in short-liguled T. miscellus. Given the known role of these genes in cell expansion, they may play a role in the differing floral and inflorescence morphologies of the two forms. In summary, the overall inflorescence transcriptome profiles are highly similar between reciprocal origins of T. miscellus. However, the dynamic homeolog-specific expression and non-additive expression patterns observed in T. miscellus emphasize the importance of reciprocal origins in promoting the genetic diversity of polyploids.

54 ENVIRONMENTAL SCIENCES↗
NASA NTRS1979

Multicyclic Controllable Twist Rotor Data Analysis

Rsults provide functional relationship between rotor performance, blade vibratory loads and dual control settings and indicate that multicyclic control produced significant reductions in blade flatwise bending moments and blade root actuator control loads. Higher harmonic terms of servo flap deflection were found to be most pronounced in flatwise bending moment, transmission vertical vibration and pitch link vibratory load equations. The existing test hardware represents a satisfactory configuration for demonstrating MCTR technology and defining a data base for additional wind tunnel testing.

Wei, F. S.↗
NASA NTRS2012

The Organic Aerosols of Titan's Atmosphere

One of Titan's many characteristics is the presence of a haze that veils its surface. This haze is composed of heavy organic particles and determining the chemical composition of these particles is a primary objective for future probes that would conduct in situ analysis. Meanwhile, solar occultations provide constraints on the optical characteristics of the haze layer. This paper describes solar occultation observations obtained by the Visual and Infrared Mapping Spectrometer (VIMS) onboard the Cassini spacecraft. These observations strongly constrain the optical characteristics of the haze layer. We detail the different steps involved in the processing of these data and apply them to two occultations that were observed at the South Pole and at the equator in order to investigate the latitudinal dependence of optical properties. The light curves obtained in seven atmospheric windows between 0.933-microns to 5-microns allow us to characterize atmospheric layers from 300 km to the surface. Very good fits of the light curves are obtained using a simple profile of number density of aerosols that is characterized by a scale height. The main difference between the South Pole and the equator is that the value of the scale height increases with altitude at the South Pole whereas it decreases at the equator. The vertically integrated amount of aerosols is similar at the two locations. The curve describing the cross-section versus wavelength is identical at the two locations suggesting that the aerosols have similar characteristics. Finally, we find that the two-way vertical transmission at 5-microns is as large as 80% at both locations.

solar occultation↗
NASA NTRS2021

Persistence of a Potential Pathogen on a Plant Microbiome-Does Seed Sanitization Matter?

Microbial interactions on, in, and around the seeds can have profound effects on plant growth, development, and productivity. These interactions can be casual or intimate in nature, but ultimately they all contribute in varying degrees to an ever-evolving microbiome. Plant microbiomes have been investigated over decades and new data continue to reveal how microbiomes play an important role in the plant’s success. Many eubacteria and fungi have been found to have a symbiotic relationship with plants and other microorganisms. The source of the plant microbiome on adult plants is provided by the seed via vertical transmission to leaf, root, flowers or fruit, as well as the surrounding environment.

Anirudha R. Dixit↗
DOE OSTI2020

Maternal Broadly Neutralizing Antibodies Can Select for Neutralization-Resistant, Infant-Transmitted/Founder HIV Variants

Each year, >180,000 infants become infected via mother-to-child transmission (MTCT) of HIV despite the availability of effective maternal antiretroviral treatments, underlining the need for a maternal HIV vaccine. We characterized 224 maternal HIV envelope (Env)-specific IgG monoclonal antibodies (MAbs) from seven nontransmitting and transmitting HIV-infected U.S. and Malawian mothers and examined their neutralization activities against nontransmitted autologous circulating viruses and infant-transmitted founder (infant-T/F) viruses. Only a small subset of maternal viruses, 3 of 72 (4%), were weakly neutralized by maternal linear V3 epitope-specific IgG MAbs, whereas 6 out of 6 (100%) infant-T/F viruses were neutralization resistant to these V3-specific IgG MAbs. We also show that maternal-plasma broadly neutralizing antibody (bNAb) responses targeting the V3 glycan supersite in a transmitting woman may have selected for an N332 V3 glycan neutralization-resistant infant-T/F virus. These data have important implications for bNAb-eliciting vaccines and passively administered bNAbs in the setting of MTCT.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Improvement of Quantification in Non-Destructive Characterization of Radioactive Waste Packages -Introduction to the Ideas of a Currently Started Project - 20197

For the characterization of radioactive waste packages (e.g. 200-L drums) with inhomogeneous activity and density distributions preferably non-destructive methods like segmented gamma scanning and transmission measurements are applied. While the first is used for identification of the radioactive inventory, both are necessary for a reliable activity quantification. Although at nuclear facilities, segmented gamma scanner are state-of-the-art and are mostly equipped with a vertically moveable transmission source the combining of this data and further a-priori information improving accuracy in data estimation giving realistic, reliable and traceable uncertainty estimations are improvable. This challenge is tackled by a R and D project funded by the German Federal Ministry of Education and Research (BMBF). The boundary conditions for this project are (i) taking into account the typical instrumentation available at nuclear facilities, (ii) minimize the overall measurement time and (iii) combining data from emission and transmission measurements by Bayesian methods. For the R and D project, being still in its initial stage, the basic ideas, the data used for evaluation and the result of a preliminary investigation demonstrating the proof of principle are presented. Additionally, some first aspects on spatial resolution in emission and transmission measurements are addressed. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗
NASA NTRS1994

Feasibility study of transmission of OTV camera control information in the video vertical blanking interval

The Operational Television system at Kennedy Space Center operates hundreds of video cameras, many remotely controllable, in support of the operations at the center. This study was undertaken to determine if commercial NABTS (North American Basic Teletext System) teletext transmission in the vertical blanking interval of the genlock signals distributed to the cameras could be used to send remote control commands to the cameras and the associated pan and tilt platforms. Wavelength division multiplexed fiberoptic links are being installed in the OTV system to obtain RS-250 short-haul quality. It was demonstrated that the NABTS transmission could be sent over the fiberoptic cable plant without excessive video quality degradation and that video cameras could be controlled using NABTS transmissions over multimode fiberoptic paths as long as 1.2 km.

White, Preston A., III↗
DOE OSTI2024

Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes

ABSTRACT Mucoromycota fungi and their Mollicutes-related endobacteria (MRE) are an ideal system for studying bacterial–fungal interactions and evolution due to the long-term and intimate nature of their interactions. However, methods for detecting MRE face specific challenges due to the poor representation of MRE in sequencing databases coupled with the high sequence divergence of their genomes, making traditional similarity searches unreliable. This has precluded estimations on the diversity of MRE associated with Mucoromycota. To determine the prevalence of previously undetected MRE in fungal genome sequences, we scanned 389 Mucoromycota genome assemblies available from the National Center for Biotechnology Information for the presence of MRE sequences using publicly available tools to map contigs from fungal assemblies to publicly available MRE genomes. We demonstrate a higher diversity of MRE genomes than previously described in Mucoromycota and a lack of cophylogeny between MRE and the majority of their fungal hosts. This supports the late invasion hypothesis regarding MRE acquisition across most of the examined fungal families. In contrast with other Mucoromycota lineages, MRE from the Gigasporaceae displayed some degree of cophylogeny with their hosts, which may indicate that horizontal transmission is restricted between members of this family or that transmission is strictly vertical. These results underscore the need for a refined process to capture sequencing data from potential fungal endosymbionts to discern their evolution and transmission. Screens of fungal genomes for MRE can help improve the quality of fungal genome assemblies while identifying new MRE lineages to further test hypotheses on their origin and evolution. IMPORTANCE Mollicutes-related endobacteria (MRE) are obligate intracellular bacteria found within Mucoromycota fungi. Despite their frequent detection, MRE roles in host functioning are still unknown. Comparative genomic investigations can improve our understanding of the impact of MRE on their fungal hosts by identifying similarities and differences in MRE genome evolution. However, MRE genomes have only been assembled from a small fraction of Mucoromycota hosts. Here, we demonstrate that MRE can be present yet undetected in publicly available Mucoromycota genome assemblies. We use these newfound sequences to assess the broader diversity of MRE and their phylogenetic relationships with respect to their hosts. We demonstrate that publicly available tools can be used to extract novel MRE sequences from assembled fungal genomes leading to insights on MRE evolution. This work contributes to a greater understanding of the fungal microbiome, which is crucial to improving knowledge on the dynamics and impacts of fungi in microbial ecosystems.

59 BASIC BIOLOGICAL SCIENCES↗
NASA NTRS1973

Tropospheric Transmissivity Measurements Using the Raman Nitrogen Lidar Technique

LIDAR measurements in Azusa, California, during October 1972, were made in which the backscattered Raman-shifted nitrogen return was ratioed at different altitudes in order to obtain transmissivity. Rawinsonde data from nearby El Monte were used to determine the temperature and nitrogen number density altitude profiles. These data and other meteorological data are compared to the vertical aerosol and transmissivity structure determined by LIDAR. Also data analysis techniques are shown for obtaining q2 (transmissivity) and beta (attenuation coefficient) as a function of altitude.

McCormick, M. P.↗
DOE OSTI2023

Identification of Faults Susceptible to Induced Seismicity (Final Report)

Central to the work documented in this report is the capability of geocellular models to represent the geologic conceptual model updated with fault identification from machine learning and joint inversion modeling of microseismic data measured and recorded as a consequence of CO 2 injection at a field demonstration site: the Illinois Basin - Decatur Project (IBDP). This work required seven unique geocellular models with 100s of simulated variations to gain a very high degree of confidence in the identification of geologic features present that contributed to induced microseismicity at IBDP. All forward modeling: pressure modeling, stress modeling, and seismic modeling used the same geologic conceptual model and representations of that model at different scales. The pressure modeling and poroelastic modeling created “snapshots” of pore pressure and stress field changes at different times during CO 2 injection, in which microseismic events were clustered (in time). These pressure and stress snapshots, within the framework and architecture of the geologic conceptual model via the geocellular model, informed the single fault and fault network models to ascertain the likelihood of fault movement (seismic or aseismic). The outcomes of the pressure, stress, and fault/fault network (seismic) modeling confirmed that the faults in the geologic conceptual model in Task 2 were likely the source of microseismic events measured at IBDP and acted as conduits for pressure to be transmitted from the injection interval into the Precambrian crystalline basement rock. This closely coordinated and integrated unique modeling approach was conducted to prove the viability of our proposed workflow 1) to better resolve crystalline basement faults, 2) detect subseismic faults that could be activated by injection, 3) increase the certainty in fault detection and their susceptibility to release seismic energy, and 4) understand transmission of pressure vertically from the well to the underlying fractured crystalline basement. The proposed methodology was effective in guiding an iterative process of calibrating forward modeling results based on similar geocellular models while honoring the geologic conceptual model (i.e., characterization data and knowledge of regional geology); this led to higher level of certainty in the identification of fault/faults zones to control seismicity and transmission of pressure to the regions of recorded and located injection induced seismicity.

58 GEOSCIENCES↗
NASA NTRS1973

Continuous liquid level measurements with time-domain reflectometry

Description of the basic principles of radar measurements of cryogenic liquid levels in storage vessels by time-domain reflectometry. The probe consists of a right circular coaxial transmission line positioned vertically in the storage vessel and having holes drilled in the outer conductor to permit penetration of the liquid into the annular gap. RF pulses transmitted through the probe are reflected at liquid/gas interface and returned for sampling at the input. The measured delay of the return pulse is displayed as the level of liquid in the vessel.

Cruz, J. E.↗
NASA NTRS1976

Effective mie-scattering and CO2 absorption in the dust-laden Martian atmosphere and its impact on radiative-convective temperature changes in the lower scale heights

A time dependent computer model of radiative-convective-conductive heat transfer in the Martian ground-atmosphere system was refined by incorporating an intermediate line strength CO2 band absorption which together with the strong-and weak-line approximation closely simulated the radiative transmission through a vertically inhomogeneous stratification. About 33,000 CO2 lines were processed to cover the spectral range of solar and planetary radiation. Absorption by silicate dust particulates, was taken into consideration to study its impact on the ground-atmosphere temperature field as a function of time. This model was subsequently attuned to IRIS, IR-radiometric and S-band occultation data. Satisfactory simulations of the measured IRIS spectra were accomplished for the dust-free condition. In the case of variable dust loads, the simulations were sufficiently fair so that some inferences into the effect of dust on temperature were justified.

Pallmann, A. J.↗