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A Blind Convolutional Deep Autoencoder for Spectral Unmixing of Hyperspectral Images Over Waterbodies

Harmful algal blooms have dangerous repercussions for biodiversity, the ecosystem, and public health. Automatic identification based on remote sensing hyperspectral image analysis provides a valuable mechanism for extracting the spectral signatures of harmful algal blooms and their respective percentage in a region of interest. This paper proposes a new model called a non-symmetrical autoencoder for spectral unmixing to perform endmember extraction and fractional abundance estimation. The model is assessed in benchmark datasets, such as Jasper Ridge and Samson. Additionally, a case study of the HSI2 image acquired by NASA over Lake Erie in 2017 is conducted for extracting optical water types. The results using the proposed model for the benchmark datasets improve unmixing performance, as indicated by the spectral angle distance compared to five baseline algorithms. Improved results were obtained for various metrics. In the Samson dataset, the proposed model outperformed other methods for water (0.060) and soil (0.025) endmember extraction. Moreover, the proposed method exhibited superior performance in terms of mean spectral angle distance compared to the other five baseline algorithms. The non-symmetrical autoencoder for the spectral unmixing approach achieved better results for abundance map estimation, with a root mean square error of 0.091 for water and 0.187 for soil, compared to the ground truth. For the Jasper Ridge dataset, the non-symmetrical autoencoder for the spectral unmixing model excelled in the tree (0.039) and road (0.068) endmember extraction and also demonstrated improved results for water abundance maps (0.1121). The proposed model can identify the presence of chlorophyll-a in waterbodies. Chlorophyll-a is an essential indicator of the presence of the different concentrations of macrophytes and cyanobacteria. The non-symmetrical autoencoder for spectral unmixing achieves a value of 0.307 for the spectral angle distance metric compared to a reference ground truth spectral signature of chlorophyll-a. The source code for the proposed model, as implemented in this manuscript, can be found at https://github.com/EstefaniaAlfaro/autoencoder_owt_spectral.git.

hyperspectral imaging↗

Satellite Monitoring of Cyanobacterial Harmful Algal Bloom Frequency in Recreational Waters and Drinking Water Sources

Cyanobacterial harmful algal blooms (cyanoHAB) cause extensive problems in lakes worldwide, including human and ecological health risks, anoxia and sh kills, and taste and odor problems. CyanoHABs are a particular concern in both recreational waters and drinking water sources because of their dense biomass and the risk of exposure to toxins. Successful cyanoHAB assessment using satellites may provide an indicator for human and ecological health protection. In this study, methods were developed to assess the utility of satellite technology for detecting cyanoHAB frequency of occurrence at locations of potential management interest. The European Space Agency's MEdium Resolution Imaging Spectrometer (MERIS) was evaluated to prepare for the equivalent series of Sentinel-3 Ocean and Land Colour Imagers (OLCI) launched in 2016 as part of the Copernicus program. Based on the 2012 National Lakes Assessment site evaluation guidelines and National Hydrography Dataset, the continental United States contains 275,897 lakes and reservoirs greater than 1 ha in area. Results from this study show that 5.6% of waterbodies were resolvable by satellites with 300 m single-pixel resolution and 0.7% of waterbodies were resolvable when a three by three pixel (3 x 3-pixel) array was applied based on minimum Euclidian distance from shore. Satellite data were spatially joined to U.S. public water surface intake (PWSI) locations, where single-pixel resolution resolved 57% of the PWSI locations and a 3 x 3-pixel array resolved 33% of the PWSI locations. Recreational and drinking water sources in Florida and Ohio were ranked from 2008 through 2011 by cyanoHAB frequency above the World Health Organizations (WHO) high threshold for risk of 100,000 cells m/L. The ranking identified waterbodies with values above the WHO high threshold, where Lake Apopka, FL (99.1%) and Grand Lake St. Marys, OH (83%) had the highest observed bloom frequencies per region. The method presented here may indicate locations with high exposure to cyanoHABs and therefore can be used to assist in prioritizing management resources and actions for recreational and drinking water sources.

Cyanobacteria↗

Growth of fungi in NaCl-MgSO4 brines

Previous investigations have shown that common fungi of the Penicillium-Aspergillus group can be grown in a variety of brines or on moist salt crystals. This simulates salt flats as well as sizeable waterbodies stabilized as saturated brines such as Don Juan Pond (Antarctica), the Great Salt Lake of Utah, and the Dead Sea in the Jordan Valley. In general, salt media rich in KCl are favored over other alkali halides; the media become more selective as the salt concentration rises and nutrient requirements become more complex. In the present paper, it is shown that media which resemble the Dead Sea salt mix can, in fact, support the growth of selected fungal strains, even in the absence of reduced organic nutrients other than glucose. Such media may serve as models for localized microhabitats on Mars.

Siegel, S. M.↗

Inland and Near-Shore Water Profiles Derived from the High-Altitude Multiple Altimeter Beam Experimental Lidar (MABEL)

The Advanced Topographic Laser Altimeter System (ATLAS) on the Ice, Cloud, and Land Elevation Satellite (ICESat-2) mission is a six beam, low energy, high repetition rate, 532-nanometer laser transmitter with photon counting detectors. Although designed primarily for detecting height changes in ice caps, sea ice, and vegetation, the polar-orbiting satellite will observe global surface water during its designed three-year life span, including inland waterbodies, coasts, and open oceans. In preparation for the mission, an ICESat-2 prototype, the Multiple Altimeter Beam Experimental Lidar (MABEL), was built and flown on high-altitude aircraft experiments over a range of inland and near-shore targets. The purpose was to test the ATLAS concept and to provide a database for developing an algorithm that detects along track surface water height and light penetration under a range of atmospheric and water conditions. The current analysis examines the data sets of three MABEL transects observed from 20 kilometers above ground of coastal and inland waters conducted in 2012 and 2013. Transects ranged from about 2 to 12 kilometers in length and included the middle Chesapeake Bay, the near-shore Atlantic coast at Virginia Beach, and Lake Mead. Results indicate MABEL's high capability for retrieving surface water height statistics with a mean height precision ofapproximately 5-7 centimeters per 100-meter segment length. Profiles of attenuated subsurface backscatter, characterized using a Signal to Background Ratio written in Log10 base, or LSBR (sub 0), were observed over a range of 1.3 to 9.3 meters, depending on water clarity and atmospheric background. Results indicate that observable penetration depth, although primarily dependent on water properties, was greatest when the solar background rate was low. Near-shore bottom reflectance was detected only at the Lake Mead site down to a maximum of 10 meters under a clear night sky and low turbidity of approximately 1.6 Nephelometric Turbidity Units (NTU). The overall results suggest that the feasibility of retrieving operational surface water height statistics from space-based photon counting systems such as ATLAS is very high for resolutions down to about 100 meters, even in partly cloudy conditions. The capability to observe subsurface backscatterprofiles is achievable but requires much longer transects of several hundreds of meters.

inland↗

Satellites for long-term monitoring of inland U.S. lakes: The MERIS time series and application for chlorophyll-a

Lakes and other surface fresh waterbodies provide drinking water, recreational and economic opportunities, food, and other critical support for humans, aquatic life, and ecosystem health. Lakes are also productive ecosystems that provide habitats and influence global cycles. Chlorophyll concentration provides a common metric of water quality, and is frequently used as a proxy for lake trophic state. Here, we document the generation and distribution of the complete MEdium Resolution Imaging Spectrometer (MERIS; Appendix A provides a complete list of abbreviations) radiometric time series for over 2300 satellite resolvable inland bodies of water across the contiguous United States (CONUS) and more than 5,000 in Alaska. This contribution greatly increases the ease of use of satellite remote sensing data for inland water quality monitoring, as well as highlights new horizons in inland water remote sensing algorithm development. We evaluate the performance of satellite remote sensing Cyanobacteria Index (CI)-based chlorophyll algorithms, the retrievals for which provide surrogate estimates of phytoplankton concentrations in cyanobacteria dominated lakes. Our analysis quantifies the algorithms' abilities to assess lake trophic state across the CONUS. As a case study, we apply a bootstrapping approach to derive a new CI-to-chlorophyll relationship, ChlBS, which performs relatively well with a multiplicative bias of 1.11 (11%) and mean absolute error of 1.60 (60%). While the primary contribution of this work is the distribution of the MERIS radiometric timeseries, we provide this case study as a roadmap for future stakeholders' algorithm development activities, as well as a tool to assess the strengths and weaknesses of applying a single algorithm across CONUS.

MERIS timeseries↗

Enhancement of a global lake and reservoir database to aid climate studies and resource monitoring utilizing satellite radar altimetry

Here, we describe the expansion and enhancement of a large (surface area ≥100 sq. km) lake and reservoir database (1.GREALD). These efforts have also resulted in the spin-off of two additional databases, one containing lakes and reservoirs (2.GREALD, area 10–99 sq. km), and the other containing ephemeral lakes (3.GELD, area ≥100 sq. km). These databases are unique sources for projects that utilize satellite radar altimeter data to monitor surface water levels. While 1.GREALD aims to be a complete catalog, 2.GREALD focuses on reservoirs in response to applied sciences programs that monitor water and energy resources. The creation of 3.GELD has climate change objectives as well as water resources and ecosystem conservation applications. The recording of information pertaining to the potential overpasses (waterbody crossings) of the current and archive satellite altimeters is a primary objective as is the need to highlight any form of controlled water level variation. The permanent water databases now contain 6282 entries, half experience some form of anthropogenic influence and ∼430 have been identified as potential climatically sensitive terminal lakes. The revised integral surface area distribution is a power law with exponent −1.016. Statistics reveal that with altimetric repeat visit times of 10-day to monthly, at least 80% of the permanent water bodies (≥10 sq. km) have been overflown at some period since the 1990s. Current information on water use and reservoir formation date show that the primary use of the reservoir class is hydroelectric power, and that China, Brazil, India, Turkey, and Vietnam dominate the dam building in recent decades.

Charon M. Birkett↗

Adaptative Site Management for a 115 Acre Chlorinated Solvent Plume with Two Separate Source Areas at Kennedy Space Center, Florida

Background/Objectives. During Resource Conservation and Recovery Act (RCRA) Facility Investigation (RFI) activities, Geosyntec delineated a chlorinated volatile organic compound (CVOC) plume at the National Aeronautics and Space Administration’s (NASA’s) Vehicle Assembly Building (VAB) area located at KSC, Florida. The RFI activities identified an approximate 115-acre dissolved plume (primarily vinyl chloride) and a trichloroethene (TCE) source area in an active aerospace complex that is surrounded by sensitive wetland/waterbodies. Due to the size of the impacted area, the Corrective Measure Design included a multi-component strategy: (i) address the source area via bioremediation; (ii) protect sensitive wetlands from impacted groundwater discharge via biosparging; and (iii) Long Term Monitoring (LTM) of the remaining dissolved plume. After the Corrective Measures implementation (CMI), NASA and Geosyntec worked with Florida Department of Environmental Protection (FDEP) to implement an adaptive site management for the complex, 115-acre site outside of the traditional RCRA process. The adaptive site management approach relied on performing supplemental assessments and implementing Interim Measures (IMs) to further assess and implement remedies over time while working within site and budget constraints, with an overall goal of achieving enough mass reduction to transition the entire site to LTM and eventually achieve site closure. Approach/Activities. After the biosparge barrier was operational and bioremediation within the source area (referred to as Hot Spot 1) achieved the Corrective Action Objective (CAO), supplemental assessment of the area between Hot Spot 1 and the biosparge barrier was performed. The conceptual site model was updated using the supplemental assessment results and an air sparge system IM was designed to treat an approximate 1.2 acre area (referred to as Hot Spot 2). After installation of the air sparge system, supplemental assessment within the remainder of the 115-acre dissolved plume was performed and a second TCE source area was identified. The TCE source area and associated areas with elevated CVOC concentrations (referred to as Hot Spot 3) were delineated and a bioremediation IM was implemented. Also, the downgradient impacts from Hot Spot 3 were adjacent to a sensitive waterbody, and negotiations with the FDEP allowed the area to be monitored using LTM. Results/Lessons Learned. The performance of supplemental assessment activities and implementation of remedial alternatives as IMs allowed NASA to successfully address groundwater impacts over time, while working within the FDEP regulatory framework. The implementation of the CMI and multiple IMs has achieved the following goals: (i) the biosparge barrier has mitigated the potential discharge of impacted groundwater to an adjacent wetland; (ii) enhanced bioremediation within Hot Spot 1 achieved the CAO within 2 years and transitioned the area into LTM; (iii) operation of an air sparge system within Hot Spot 2 removed TCE as a constituent of concern and contributed to a reduction (approximately 43%) in the impacted groundwater area outside the air sparge treatment area (plume collapse); and (iv) bioremediation within Hot Spot 3 removed approximately 80% of the CVOC mass and contributed to a reduction (approximately 47%) in the impacted groundwater area outside the bioremediation IM treatment area. Overall, the adaptive approach is protecting the sensitive water bodies surrounding the complex site and reducing the area of impacted groundwater, which is moving the entire site towards LTM.

Rebecca C Daprato↗

Youngstown and Warren Disasters: Mapping Flood Susceptibility, Vulnerability, and Risk and Tree Canopy Coverage in Northern Ohio to Inform Stormwater Management and Flood Mitigation Efforts

Both pluvial and fluvial flooding events pose direct challenges on urban infrastructure and communities across the United States. Heavy rainfall events oversaturate the ground, overflow waterbodies, and overwhelm stormwater infrastructure. Vulnerable areas receive heavy damage from flooding events due to physical factors like increased impervious surfaces, poor stormwater systems, and limited greenspaces. These vulnerable neighborhoods are comprised of aging populations, minority communities, and lower income levels. Lack of data in these communities have made it difficult to implement policymaking and flood mitigation strategies. Using the Urban Flood Risk Mitigation model (InVEST) and the PlanetScope satellite constellation, the team visualized historical flooding and tree canopy coverage as a measure of flood susceptibility. The team also used the Arc-Malstrom model to provide further insight into where flooding accumulates via surface elevation depressions in the study area. To validate these models, the team explored the spatial variation of rainfall events using NASA’s Integrated Multi-satellite Retrievals for Global Precipitation Measurement (GPM IMERG). The resulting maps highlight areas surrounding the cities of Youngstown and Warren as being the most flood susceptible and socially vulnerable, while the city centers contain the lowest tree canopy coverage. The DEVELOP team collaborated with the Environmental Collaborative of Ohio (ECO) to create products for end users within the City of Warren’s Water Pollution Control Department, the Eastgate Regional Council of Governments and the Healthy Community Partnership of Mahoning Valley. These products help identify target areas for preventative flood mitigation measures as well as areas ideal for green infrastructure intervention.

InVEST Urban Flood Risk Mitigation Model↗

A Tuned Ocean Color Algorithm for the Arctic Ocean: A Solution for Waters With High CDM Content

The Arctic Ocean (AO) is the most river-influenced ocean. Located at the land-sea interface wherein phytoplankton blooms are common, Arctic coastal waterbodies are among the most affected regions by climate change. Given phytoplankton are critical for energy transfer supporting marine food webs, accurate estimation of chlorophyll a concentration (Chl), which is frequently used as a proxy of phytoplankton biomass, is critical for improving our knowledge of the Arctic marine ecosystem and its response to the ongoing climate change. Due to the unique and complex bio-optical properties of the AO, efforts are still needed to obtain more accurate Chl estimates, especially for coastal waters with high colored detrital material (CDM) content. In this study, we optimized the the Garver-Siegel-Maritorena (GSM) algorithm, using an Arctic bio-optical dataset comprised of seven wavelengths (the original GSM wavelengths plus 625 nm). Results suggested that our tuned algorithm, denoted GSMA, outperformed an alternative AO GSM algorithm denoted AO.GSM, but the accuracy of Chl estimates was only improved by 8%. In addition, GSMA showed appreciable robustness when assessed using a satellite image and two non-Arctic coastal datasets.

Arctic↗