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At least 19 records

Dispersal, habitat filtering, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography

Abstract Wetlands store 20–30% of the world’s soil carbon, and identifying the microbial controls on these carbon reserves is essential to predicting feedbacks to climate change. Although viral infections likely play important roles in wetland ecosystem dynamics, we lack a basic understanding of wetland viral ecology. Here 63 viral size-fraction metagenomes (viromes) and paired total metagenomes were generated from three time points in 2021 at seven fresh- and saltwater wetlands in the California Bodega Marine Reserve. We recovered 12,826 viral population genomic sequences (vOTUs), only 4.4% of which were detected at the same field site two years prior, indicating a small degree of population stability or recurrence. Viral communities differed most significantly among the seven wetland sites and were also structured by habitat (plant community composition and salinity). Read mapping to a new version of our reference database, PIGEONv2.0 (515,763 vOTUs), revealed 196 vOTUs present over large geographic distances, often reflecting shared habitat characteristics. Wetland vOTU microdiversity was significantly lower locally than globally and lower within than between time points, indicating greater divergence with increasing spatiotemporal distance. Viruses tended to have broad predicted host ranges via CRISPR spacer linkages to metagenome-assembled genomes, and increased SNP frequencies in CRISPR-targeted major tail protein genes suggest potential viral eco-evolutionary dynamics in response to both immune targeting and changes in host cell receptors involved in viral attachment. Together, these results highlight the importance of dispersal, environmental selection, and eco-evolutionary dynamics as drivers of local and global wetland viral biogeography.

Environmental Sciences & Ecology↗

Great Lakes Water Resources II: A Google Earth Engine Tool to Automate Wetland Mapping Using Optical and Radar Satellite Sensors in the Great Lakes Basin for Wetland Management and Monitoring

The Great Lakes Basin is one of the world’s largest freshwater ecosystems. The Basin harbors over 200,000 acres of wetlands. These wetlands provide a variety of environmental, ecological, and recreational functions to over 30 million people in the region. Some of these functions include improving water quality, mitigating flood impacts, providing wildlife habitat, and housing recreational activities. However, due to anthropogenic activities, habitat conversion and degradation threaten to disrupt or destroy remaining wetland ecosystems. Maps of wetland distribution based on ground surveys are costly and labor-intensive, prohibiting timely evaluations of wetland loss and gain. The Great Lakes Water Resources II team at the NASA Jet Propulsion Laboratory developed the Wetlands Extent Tool 2.0 (WET 2.0) in Google Earth Engine to automate mapping of wetland distribution in the Great Lakes Basin. The team partnered with the US Fish and Wildlife Service (USFWS), Environmental Protection Agency (EPA), Minnesota Department of Natural Resources (MDNR), the National Oceanic and Atmospheric Administration (NOAA), and Ducks Unlimited (DU). WET 2.0 incorporates Landsat 8 Operational Land Imager (OLI), Sentinel-1 C-band Synthetic Aperture Radar (C-SAR), and Sentinel-2 Multispectral Instrument (MSI) satellite data. WET 2.0 is trained to classify anywhere in the Great Lakes Basin. Utilizing a Random Forest classifier, WET 2.0 is capable of automatically mapping wetland extent in the entire Great Lakes Basin, achieving a mean overall accuracy of 80.12% when tested in Michigan. Findings and maps produced in WET 2.0 will enable our partners to identify areas of ecosystem degradation and wetland destruction in order to enact environmental practices and policy initiatives to maintain environmental and economic health in the area.

Water Resources↗

Great Lakes Water Resources II: A Google Earth Engine Tool to Automate Wetland Extent Mapping Using Optical and Radar Satellite Sensors in the Great Lakes Basin for Wetland Management and Monitoring

The Great Lakes Basin is one of the world’s largest freshwater ecosystems. The Basin harbors over 200,000 acres of wetlands that provide a variety of environmental, ecological, and recreational functions to over 30 million people in the region. Some of these functions include improving water quality, mitigating flood impacts, providing wildlife habitat, and housing recreational activities. However, due to anthropogenic activities, habitat conversion and degradation threaten to disrupt or destroy remaining wetland ecosystems. Maps of wetland distribution based on ground surveys are costly and labor-intensive, prohibiting timely evaluations of wetland loss and gain. The Great Lakes Water Resources II team at the NASA Jet Propulsion Laboratory developed the Wetlands Extent Tool 2.0 (WET 2.0) in Google Earth Engine to automate mapping of wetland distribution in the Great Lakes Basin. The team partnered with the US Fish and Wildlife Service, Environmental Protection Agency, Minnesota Department of Natural Resources, the National Oceanic and Atmospheric Administration, and Ducks Unlimited. WET 2.0 incorporates Landsat 8 Operational Land Imager (OLI), Sentinel-1 C-band Synthetic Aperture Radar (C-SAR), and Sentinel-2 Multispectral Instrument (MSI) data. Utilizing a Random Forest classifier, WET 2.0 is capable of automatically mapping wetland extent in the entire Great Lakes Basin, achieving a mean overall accuracy of 80.12% when tested in Michigan.Findings and maps produced by WET 2.0 will enable our partners to identify areas of ecosystem degradation and wetland destruction in order to enact environmental practices and policy initiatives to maintain environmental and economic health in the area.

Water Resources↗

WET Water Resources: A Google Earth Engine Python API Tool to Automate Wetland Extent Mapping Using Radar Satellite Sensors for Wetland Management and Monitoring

Wetland ecosystems are annually or seasonally wet transition zones between land and water. They provide a range of ecosystem services such as water filtration, flood mitigation, and carbon sequestration, as well as hosting biodiversity hotspots. Although they fulfill fundamental physical and natural processes, wetland extent and health are threatened by anthropogenic influences related to urbanization, population increase, pollution, and climate change. Recognizing the need to quantitatively monitor changes in these recently threatened ecosystems in a timely and cost-effective way, we developed a Google Earth Engine (GEE) Python API tool for automated wetland extent mapping using optical and radar satellite sensors that can be applied globally. The tool will significantly improve wetland change analysis and monitoring as SAR data provides high resolution (5-10 m) imagery, unaffected by cloud cover and light availability (day vs. night), common limitations for other remotely sensed sensors. The tool utilizes Copernicus Sentinel-1 C-band and NISAR L-band (once operational and available on the GEE repository) synthetic aperture radar (SAR) imagery. During image preprocessing, we applied a Terra Moderate Resolution Imaging Spectroradiometer (MODIS) snow product to determine regional snow coverage, which affects land classification sensitivity. Calibration and validation were conducted through a historical change and sensitivity analysis of the Sudd wetland located in central Sudan. The tool was the first of its kind, as it enables NISAR data processing through an open-source GEE repository, further expanding and improving the utility of NASA Earth observations and contributing to NASA Open Science initiatives. We anticipate the tool will be used by researchers and practitioners interested in wetland monitoring and management.

Inundation↗

A Process-based, Climate-Sensitive Model to Derive Methane Emissions from Natural Wetlands: Application to 5 Wetland Sites, Sensitivity to Model Parameters and Climate

Methane emissions from natural wetlands constitutes the largest methane source at present and depends highly on the climate. In order to investigate the response of methane emissions from natural wetlands to climate variations, a 1-dimensional process-based climate-sensitive model to derive methane emissions from natural wetlands is developed. In the model the processes leading to methane emission are simulated within a 1-dimensional soil column and the three different transport mechanisms diffusion, plant-mediated transport and ebullition are modeled explicitly. The model forcing consists of daily values of soil temperature, water table and Net Primary Productivity, and at permafrost sites the thaw depth is included. The methane model is tested using observational data obtained at 5 wetland sites located in North America, Europe and Central America, representing a large variety of environmental conditions. It can be shown that in most cases seasonal variations in methane emissions can be explained by the combined effect of changes in soil temperature and the position of the water table. Our results also show that a process-based approach is needed, because there is no simple relationship between these controlling factors and methane emissions that applies to a variety of wetland sites. The sensitivity of the model to the choice of key model parameters is tested and further sensitivity tests are performed to demonstrate how methane emissions from wetlands respond to climate variations.

Walter, Bernadette P.↗

Wetland Re-Evaluation and Delineation Report for the Los Alamos National Laboratories Wetlands Project, Los Alamos County, New Mexico

In March of 2005, the Department of Energy (DOE), National Nuclear Security Administration (NNSA), Los Alamos Site office (LASO) requested the U.S. Army Corps of Engineers Albuquerque District (USACE) to identify and delineate wetlands at Los Alamos National Laboratory (LANL). The results of this study were intended to support the preparation of the Supplemental Site-Wide Environmental Impact Statement (EIS) and various mitigative measures that would become part of the National Environmental Policy Act (NEPA) compliance process for LANL. The term “wetland” will be used throughout the report to refer to the potential wetlands listed in Table 1. Many of these potential "wetlands” were not determined to be wetlands based on 2025 data.

60 APPLIED LIFE SCIENCES↗

WET Water Resources: A Google Earth Engine Python API Tool to Automate Wetland Extent Mapping Using Radar Satellite Sensors for Wetland Management and Monitoring

Wetland ecosystems are annually or seasonally wet transition zones between land and water. They provide a range of ecosystem services such as water filtration, flood mitigation, and carbon sequestration, as well as hosting biodiversity hotspots. Although they fulfill fundamental physical and natural processes, wetland extent and health are threatened by anthropogenic influences related to urbanization, population increase, pollution, and climate change. Recognizing the need to quantitatively monitor changes in these recently threatened ecosystems in a timely and cost-effective way, we developed a Google Earth Engine (GEE) Python API tool for automated wetland extent mapping using optical and radar satellite sensors that can be applied globally. The tool will significantly improve wetland change analysis and monitoring as the optical and SAR data proves high resolution (5-10 m) imagery, and SAR data is unaffected by cloud cover and light availability (day vs. night), which are common limitations for other remotely sensed sensors. The tool utilizes Copernicus Sentinel-1 C-band and NISAR L-band synthetic aperture radar (SAR) imagery. During image preprocessing, we applied a MODIS snow mask product to mask global snow coverage, which would affect land classification sensitivity. Calibration and validation were conducted through a historical change and sensitivity analysis of the Sudd watershed located in central Sudan. The tool was the first of its kind, as it enables NISAR data processing through an open-source GEE repository, further expanding and improving the utility of NASA Earth observations and contributing to NASA Open Science initiatives. We anticipate the tool will be used by researchers and practitioners interested in wetland monitoring and management..

Lori Berberian↗

A Framework for Wetlands Research: Development of a Wetlands Data Base

Issues related to the assembly of a comprehensive global wetlands data base are presented. A strategy to collect relevant data for wetland ecosystems through remote sensing inventories of wetland distribution was discussed. Elements of a research program on biogenic gas fluxes were identified. The major wetland parameters and their functional importance to material exchange mechanisms are summarized.

Source record↗

Wetlands Delineation Report and Classification: PNNL – Sequim (formerly MSL) Wetland Delineation for the Water and Sewer Line

A wetlands delineation report summarizes the wetland delineation on the southern portion of PNNL-Sequim campus to support campus development, maintenance, and potential research activities. The delineation was conducted in accordance with state and federal wetland regulations and summarizes the potential jurisdiction. This will used to support biological reports, NEPA documents, and permit applications.

54 ENVIRONMENTAL SCIENCES↗

Wetlands Delineation Report and Classification: PNNL – Sequim (formerly MSL) Estuary Wetland Delineation

The Pacific Northwest National Laboratory (PNNL) – Sequim, historically known as the Marine Sciences Laboratory (MSL) in Sequim, Washington, is managed and operated by Battelle on behalf of the U.S. Department of Energy (DOE) Pacific Northwest Site Office (PNSO). The site provides capabilities for future energy research, climate change effects analyses, wetland and coastal ecosystem restoration, other environmental research involving marine resources and hosts the only marine research facilities in the Department of Energy National Laboratory Complex. In order to support campus development, maintenance, and potential research activities, a wetland delineation was conducted on the northern portion of campus in accordance with state and federal wetland regulations. This technical report details out the delineation.

54 ENVIRONMENTAL SCIENCES↗

Cali Urban Development: Using NASA Earth Observations to Assess Wetlands and Land Reclamation in Cali, Colombia

Recent research has documented the global decline of wetlands, largely attributed to increased urbanization and agriculture. This NASA DEVELOP study partnered with two local environmental entities in Cali, Colombia: The Fundación Dinamizadores Ambientales and the Departamento Administrativo de Gestión del Medio Ambiente. The team utilized Earth observations to evaluate trends in wetland extent, potential, and land cover in Cali between 2002 and 2023. A supervised classifier was generated within Google Earth Engine to create land use analyses of the region using Landsat 5 TM, Landsat 8 OLI, and Landsat 9 OLI-2 imagery. To identify locations of wetland potential within the study area, wetland probability was assessed by inputting PlanetScope, Sentinel-2 MSI, and partner-provided datasets into the Wetland Intrinsic Potential Tool in ArcGIS Pro and R. Data from Sentinel-1 C-SAR, Sentinel 2-MSI, and Suomi-NPP VIIRS were used to evaluate wetland extent using the Wetland Extent 3.0 Tool in3 Python. Overall, results indicated high wetland potential, particularly in the southeast region where agricultural areas were previously wetlands. Outputs also suggest a vast network of riparian wetlands in Cali. This study did not investigate socioeconomic data as it relates to wetlands, which is an avenue for future research. This project supplemented research into links between land use change, wetland extent, and wetland potential, and provided partner organizations with an objective foundation from which they can identify at-risk wetlands and develop community initiatives for management, conservation, and education.

Cali↗

Remote Sensing of Global Wetland Dynamics

Although natural wetlands only cover about 4% of the earth's ice-free land surface, they are the world's largest methane (CH4) source and the only one dominated by climate. In addition, wetlands affect climate by modulating temperatures and heat fluxes, storing water, increasing evaporation, and altering the seasonality of runoff and river discharge to the oceans. Current CH4 emissions from wetlands are relatively well understood but the sensitivity of wetlands and their emissions to climate variations remains the largest uncertainty in the global CH4 cycle and could strongly influence predictions of future climate. Therefore, characterizing climate-sensitive processes prevailing in the world's wetlands is crucial to understanding and predicting physical and biogeochemical responses of wetlands to interannual and longer-term climate variations. Recent research has resulted in the first generation of models to predict methane emissions from wetlands but the models must still be applied to static data on wetland distributions. Moreover, no models currently exist to realistically predict the distribution and dynamics of wetlands themselves for the current, or any other, climate. The dominant obstacle to modeling wetland dynamics has been lack of remote sensing techniques and data useful for characterizing quantitatively the seasonal and interannual variations of wetlands. We report on initial remote sensing studies undertaken to validate a global hydrological model linking rivers, takes and wetlands. Using a combination of SSM/I microwave and TOPEX Poseidon altimetry data sets, we developed and applied techniques to quantify inundation extent and duration for several large wetlands in tropical Africa and South America. Our initial results indicate that seasonally-inundated wetlands can be well characterized over large spatial scales and at monthly time scales using these remote sensing data. The results also confirm that currently available remote sensing products can be applied to provide crucial data to the research community modeling global hydrological and biogeochemical cycles.

Matthews, Elaine↗

Evaluation of Matthews-WLR-CH4: A New Wetland, Lake, and Reservoir Methane Emissions Data Set

Methane (CH4) is emitted from a variety of sources, both natural and anthropogenic, and is the second most important greenhouse gas contributing to climate change. Natural wetlands are the largest single contributor to annual global CH4 emissions and other inland water sources, such as lakes and reservoirs, produce CH4 but have received less attention. These emission sources are among the most uncertain components of the global CH4 cycle. These uncertainties stem from numerous issues, including the vast variability in these ecosystems and the sensitivity of CH4 emissions to interannual climate variations. Existing CH4 emission models display large differences in wetland spatial extent and include simplified, or lack all together, wetland-type classifications. Furthermore, CH4 emissions from lakes and reservoirs are typically combined with wetlands, or ignored, on a regional and global scale. Our NASA Interdisciplinary Research in Earth Science (IDS) study is focused on developing a suite of data sets on wetlands, lakes, and reservoirs (WLR) including global distributions of types, CH4-centric classifications, and daily CH4 emission rates (hereafter Matthews-WLR-CH4). This project is unique in that it comprises source-independent emission data for WLR, the first spatially-explicit data set of lake and reservoir CH4 emissions, and wetland emissions comprising numerous different wetland-type classifications.The focus of this study is to perform the initial evaluation of the wetland and lake CH4 emissions data from Matthews-WLR-CH4. This evaluation will focus on the domain of North America and include: 1) estimates of the contribution of wetland and lake sources to total CH4 emissions and atmospheric mixing ratios, 2) comparisons of wetland fraction and CH4 emissions to a suite of existing models (e.g., Wetland and Wetland CH4 Inter-comparison of Models Project (WETCHIMP), Global Carbon Project (GCP)), and 3) an accuracy assessment with in situ airborne and tower-based atmospheric CH4 observations when the Matthews-WLR-CH4 emissions are implemented in forward and inverse CarbonTracker-Lagrange (CT-L) CH4 model simulations. Here we will present the new Matthews-WLR-CH4 wetland and lake CH4 emissions data, the initial evaluation of these products, and the path forward for our project.

Reservoir↗

Modeling the Distribution and Type of High-Latitude Natural Wetlands for Methane Studies

High latitude (>50N) natural wetlands emit a substantial amount of methane to the atmosphere, and are located in a region of amplified warming. Northern hemisphere high latitudes are characterized by cold climates, extensive permafrost, poor drainage, short growing seasons, and slow decay rates. Under these conditions, organic carbon accumulates in the soil, sequestering CO2 from the atmosphere. Methanogens produce methane from this carbon reservoir, converting stored carbon into a powerful greenhouse gas. Methane emission from wetland ecosystems depends on vegetation type, climate characteristics (e.g, precipitation amount and seasonality, temperature, snow cover, etc.), and geophysical variables (e.g., permafrost, soil type, and landscape slope). To understand how wetland methane dynamics in this critical region will respond to climate change, we have to first understand how wetlands themselves will change and therefore, what the primary controllers of wetland distribution and type are. Understanding these relationships permits data-anchored, physically-based modeling of wetland distribution and type in other climate scenarios, such as paleoclimates or future climates, a necessary first step toward modeling wetland methane emissions in these scenarios. We investigate techniques and datasets for predicting the distribution and type of high latitude (>50N) natural wetlands from a suite of geophysical and climate predictors. Hierarchical clustering is used to derive an empirical methane-centric wetland model. The model is applied in a multistep process first to predict the distribution of wetlands from relevant geophysical parameters, and then, given the predicted wetland distribution, to classify the wetlands into methane-relevant types using an expanded suite of climate and biogeophysical variables. As the optimum set of predictor variables is not known a priori, the model is applied iteratively, and each simulation is evaluated with respect to observed high-latitude wetlands.

Romanski, Joy↗

Advancements and opportunities to improve bottom–up estimates of global wetland methane emissions

Wetlands are the single largest natural source of atmospheric methane (CH 4 ), contributing approximately 30% of total surface CH 4 emissions, and they have been identified as the largest source of uncertainty in the global CH 4 budget based on the most recent Global Carbon Project CH 4 report. High uncertainties in the bottom–up estimates of wetland CH 4 emissions pose significant challenges for accurately understanding their spatiotemporal variations, and for the scientific community to monitor wetland CH 4 emissions from space. In fact, there are large disagreements between bottom–up estimates versus top–down estimates inferred from inversion of atmospheric CH 4 concentrations. To address these critical gaps, we review recent development, validation, and applications of bottom–up estimates of global wetland CH 4 emissions, as well as how they are used in top–down inversions. These bottom–up estimates, using (1) empirical biogeochemical modeling (e.g. WetCHARTs: 125–208 TgCH 4 yr -1 ); (2) process-based biogeochemical modeling (e.g. WETCHIMP: 190 ± 39 TgCH 4 yr -1 ); and (3) data-driven machine learning approach (e.g. UpCH4: 146 ± 43 TgCH 4 yr -1 ). Bottom–up estimates are subject to significant uncertainties (~80 Tg CH 4 yr -1 ), and the ranges of different estimates do not overlap, further amplifying the overall uncertainty when combining multiple data products. These substantial uncertainties highlight gaps in our understanding of wetland CH 4 biogeochemistry and wetland inundation dynamics. Major tropical and arctic wetland complexes are regional hotspots of CH 4 emissions. However, the scarcity of satellite data over the tropics and northern high latitudes offer limited information for top–down inversions to improve bottom–up estimates. Recent advances in surface measurements of CH 4 fluxes (e.g. FLUXNET-CH 4 ) across a wide range of ecosystems including bogs, fens, marshes, and forest swamps provide an unprecedented opportunity to improve existing bottom–up estimates of wetland CH 4 estimates. We suggest that continuous long-term surface measurements at representative wetlands, high fidelity wetland mapping, combined with an appropriate modeling framework, will be needed to significantly improve global estimates of wetland CH 4 emissions. There is also a pressing unmet need for fine-resolution and high-precision satellite CH 4 observations directed at wetlands.

54 ENVIRONMENTAL SCIENCES↗