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Lin, Yuewei

Publications and source records attributed to Lin, Yuewei.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Machine Learning‐Guided Discovery of High‐Entropy Perovskite Oxide Electrocatalysts via Oxygen Vacancy Engineering

Abstract High‐entropy perovskite oxides (HEPOs) have recently emerged as multifunctional catalysts. However, the HEPOs’ structural and compositional complexity hinders the easy and accurate extrapolation of activity indicators, which are essential for establishing structure‐property correlations. Here, OxiGraphX, is introduced as a novel graph neural network (GNN) model designed to capture the complex relationships among structure, composition, and atomic chemical environments for accurate prediction of oxygen vacancy formation energies (OVFEs) in HEPOs. By integrating machine learning (ML), density functional theory (DFT), and experimental validation, this work demonstrates an efficient framework for rapidly and accurately screening HEPO electrocatalysts for oxygen evolution reaction (OER). The OxiGraphX predicts OVFEs with a precision exceeding existing data, enabling the identification of compositions of higher oxygen vacancy content (OVC) and, thus, higher catalytic activity. Furthermore, the model explores latent spaces that translate effectively into experimental domains, bridging computational predictions with real‐world applications. This approach accelerates the discovery of high‐performance HEPO catalysts while providing deeper insights into their catalytic mechanisms.

Chemistry↗
DOE OSTI2025

FM4NPP: A Scaling Foundation Model for Nuclear and Particle Physics

Large language models have revolutionized artificial intelligence by enabling large, generalizable models trained through self-supervision. This paradigm has inspired the development of scientific foundation models (FMs). However, applying this capability to experimental particle physics is challenging due to the sparse, spatially distributed nature of detector data, which differs dramatically from natural language. This work addresses if an FM for particle physics can scale and generalize across diverse tasks. We introduce a new dataset with more than 11 million particle collision events and a suite of downstream tasks and labeled data for evaluation. We propose a novel self-supervised training method for detector data and demonstrate its neural scalability with models that feature up to 188 million parameters. With frozen weights and task-specific adapters, this FM consistently outperforms baseline models across all downstream tasks. The performance also exhibits robust data-efficient adaptation. Further analysis reveals that the representations extracted by the FM are task-agnostic but can be specialized via a single linear mapping for different downstream tasks.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2024

Artificial intelligence to unlock real-world evidence in clinical oncology: A primer on recent advances

Purpose: Real world evidence is crucial to understanding the diffusion of new oncologic therapies, monitoring cancer outcomes, and detecting unexpected toxicities. In practice, real world evidence is challenging to collect rapidly and comprehensively, often requiring expensive and time-consuming manual case-finding and annotation of clinical text. In this Review, we summarise recent developments in the use of artificial intelligence to collect and analyze real world evidence in oncology. Methods: We performed a narrative review of the major current trends and recent literature in artificial intelligence applications in oncology. Results: Artificial intelligence (AI) approaches are increasingly used to efficiently phenotype patients and tumors at large scale. These tools also may provide novel biological insights and improve risk prediction through multimodal integration of radiographic, pathological, and genomic datasets. Custom language processing pipelines and large language models hold great promise for clinical prediction and phenotyping. Conclusions: Despite rapid advances, continued progress in computation, generalizability, interpretability, and reliability as well as prospective validation are needed to integrate AI approaches into routine clinical care and real-time monitoring of novel therapies.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2024

INSURE: An Information Theory iNspired diSentanglement and pURification modEl for Domain Generalization

Domain Generalization (DG) aims to learn a generalizable model on the unseen target domain by only training on the multiple observed source domains. Although a variety of DG methods have focused on extracting domain-invariant features, the domain-specific class-relevant features have attracted attention and been argued to benefit generalization to the unseen target domain. To take into account the class-relevant domain-specific information, in this paper we propose an Information theory iNspired diSentanglement and pURification modEl (INSURE) to explicitly disentangle the latent features to obtain sufficient and compact (necessary) class-relevant feature for generalization to the unseen domain. Specifically, we first propose an information theory inspired loss function to ensure the disentangled class-relevant features contain sufficient class label information and the other disentangled auxiliary feature has sufficient domain information. Additionally, we further propose a paired purification loss function to let the auxiliary feature discard all the class-relevant information and thus the class-relevant feature will contain sufficient and compact (necessary) class-relevant information. Moreover, instead of using multiple encoders, we propose to use a learnable binary mask as our disentangler to make the disentanglement more efficient and make the disentangled features complementary to each other. We conduct extensive experiments on five widely used DG benchmark datasets including PACS, VLCS, OfficeHome, TerraIncognita, and DomainNet. The proposed INSURE achieves state-of-the-art performance. We also empirically show that domain-specific class-relevant features are beneficial for domain generalization. The code is available at https://github.com/yuxi120407/INSURE .

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Exploring Robust Features for Improving Adversarial Robustness

While deep neural networks (DNNs) have revolutionized many fields, their fragility to carefully designed adversarial attacks impedes the usage of DNNs in safety-critical applications. In this article, we strive to explore the robust features that are not affected by the adversarial perturbations, that is, invariant to the clean image and its adversarial examples (AEs), to improve the model’s adversarial robustness. Specifically, we propose a feature disentanglement model to segregate the robust features from nonrobust features and domain-specific features. Here, the extensive experiments on five widely used datasets with different attacks demonstrate that robust features obtained from our model improve the model’s adversarial robustness compared to the state-of-the-art approaches. Moreover, the trained domain discriminator is able to identify the domain-specific features from the clean images and AEs almost perfectly. This enables AE detection without incurring additional computational costs. With that, we can also specify different classifiers for clean images and AEs, thereby avoiding any drop in clean image accuracy.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

AesFA: An Aesthetic Feature-Aware Arbitrary Neural Style Transfer

Neural style transfer (NST) has evolved significantly in recent years. Yet, despite its rapid progress and advancement, existing NST methods either struggle to transfer aesthetic information from a style effectively or suffer from high computational costs and inefficiencies in feature disentanglement due to using pre-trained models. This work proposes a lightweight but effective model, AesFA---Aesthetic Feature-Aware NST. The primary idea is to decompose the image via its frequencies to better disentangle aesthetic styles from the reference image while training the entire model in an end-to-end manner to exclude pre-trained models at inference completely. Finally, to improve the network's ability to extract more distinct representations and further enhance the stylization quality, this work introduces a new aesthetic feature: contrastive loss. Extensive experiments and ablations show the approach not only outperforms recent NST methods in terms of stylization quality, but it also achieves faster inference. Codes are available at https://github.com/Sooyyoungg/AesFA.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Graphic contrastive learning analyses of discontinuous molecular dynamics simulations: Study of protein folding upon adsorption

A comprehensive understanding of the interfacial behaviors of biomolecules holds great significance in the development of biomaterials and biosensing technologies. In this work, we used discontinuous molecular dynamics (DMD) simulations and graphic contrastive learning analysis to study the adsorption of ubiquitin protein on a graphene surface. Our high-throughput DMD simulations can explore the whole protein adsorption process including the protein structural evolution with sufficient accuracy. Contrastive learning was employed to train a protein contact map feature extractor aiming at generating contact map feature vectors. Subsequently, these features were grouped using the k-means clustering algorithm to identify the protein structural transition stages throughout the adsorption process. The machine learning analysis can illustrate the dynamics of protein structural changes, including the pathway and the rate-limiting step. Our study indicated that the protein–graphene surface hydrophobic interactions and the π–π stacking were crucial to the seven-stage adsorption process. Upon adsorption, the secondary structure and tertiary structure of ubiquitin disintegrated. The unfolding stages obtained by contrastive learning-based algorithm were not only consistent with the detailed analyses of protein structures but also provided more hidden information about the transition states and pathway of protein adsorption process and structural dynamics. Our combination of efficient DMD simulations and machine learning analysis could be a valuable approach to studying the interfacial behaviors of biomolecules.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Coarse-to-fine Task-driven Inpainting for Geoscience Images

The processing and recognition of geoscience images have wide applications. Most of existing researches focus on understanding the high-quality geoscience images by assuming that all the images are clear. However, in many real-world cases, the geoscience images might contain occlusions during the image acquisition. This problem actually implies the image inpainting problem in computer vision and multimedia. As far as we know, all the existing image inpainting algorithms learn to repair the occluded regions for a better visualization quality, they are excellent for natural images but not good enough for geoscience images, and they never consider the following geoscience task when developing inpainting methods. Here, this paper aims to repair the occluded regions for a better geoscience task performance and advanced visualization quality simultaneously, without changing the current deployed deep learning based geoscience models. Because of the complex context of geoscience images, we propose a coarse-to-fine encoder-decoder network with the help of designed coarse-to-fine adversarial context discriminators to reconstruct the occluded image regions. Due to the limited data of geoscience images, we propose a MaskMix based data augmentation method, which augments inpainting masks instead of augmenting original images, to exploit the limited geoscience image data. The experimental results on three public geoscience datasets for remote sensing scene recognition, cross-view geolocation and semantic segmentation tasks respectively show the effectiveness and accuracy of the proposed method. The code is available at: https://github.com/HMS97/Task-driven-Inpainting.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Transferable Adversarial Attack on 3D Object Tracking in Point Cloud

3D point cloud object tracking has recently witnessed considerable progress relying on deep learning. Such progress, however, mainly focuses on improving tracking accuracy. The risk, especially considering that deep neural network is vulnerable to adversarial perturbations, of a tracker being attacked is often neglected and rarely explored. In order to attract attentions to this potential risk and facilitate the study of robustness in point cloud tracking, we introduce a novel transferable attack network (TAN) to deceive 3D point cloud tracking. Specifically, TAN consists of a 3D adversarial generator, which is trained with a carefully designed multi-fold drift (MFD) loss. The MFD loss considers three common grounds, including classification, intermediate feature and angle drifts, across different 3D point cloud tracking frameworks for perturbation generation, leading to high transferability of TAN for attack. In our extensive experiments, we demonstrate the proposed TAN is able to not only drastically degrade the victim 3D point cloud tracker, \ie, P2B, but also effectively deceive other unseen state-of-the-art approaches such as BAT and M^2Track, posing a new threat to 3D point cloud tracking.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2022

Galaxy deblending using residual dense neural networks

We present a new neural network approach for deblending galaxy images in astronomical data using Residual Dense Neural network (RDN) architecture. We train the network on synthetic galaxy images similar to the typical arrangements of field galaxies with a finite point spread function (PSF) and realistic noise levels. The main novelty of our approach is the usage of two distinct neural networks: i) a deblending network which isolates a single galaxy postage stamp from the composite and, ii) a classifier network which counts the remaining number of galaxies. The deblending proceeds by iteratively peeling one galaxy at a time from the composite until the image contains no further objects as determined by the classifier, or by other stopping criteria. By looking at the consistency in the outputs of the two networks, we can assess the quality of the deblending. Further, we characterize the flux and shape reconstructions in different quality bins and compare our deblender with the industry standard, SExtractor. We also discuss possible future extensions for the project with variable PSFs and noise levels.

79 ASTRONOMY AND ASTROPHYSICS↗
DOE OSTI2021

End-to-end orientation estimation from 2D cryo-EM1images

Cryo-electron microscopy (cryo-EM) is a Nobel Prize-winning technique for deter-mining high-resolution 3D structures of biological macromolecules. A 3D structure is reconstructed from hundreds of thousands of noisy 2D projection images. However, existing 3D reconstruction methods are still time-consuming, and one of the major computational bottlenecks is to recover the unknown orientation of the particle in16each 2D image. The dominant methods typically exploit expensive global search on each image to estimate the missing orientations. Here, a novel end-to-end supervised learning method is introduced to directly recover the missing orientations from 2D cryo-EM images. A neural network is used to approximate the mapping from images to orientations. Furthermore, a robust loss function is proposed for optimizing the parameters of the network, which can handle both asymmetric and symmetric 3D structures. Experiments on synthetic datasets with various symmetry types confirm that the neural network is capable of recovering orientations from 2D cryo-EM images, and the results on one real cryo-EM dataset further demonstrate its potential in more challenging imaging conditions.

3D reconstruction↗
DOE OSTI2021

Transparent Object Tracking Benchmark

Visual tracking has achieved considerable progress in recent years. However, current research in the field mainly focuses on tracking of opaque objects, while little attention is paid to transparent object tracking. In this paper, we make the first attempt in exploring this problem by proposing a Transparent Object Tracking Benchmark (TOTB). Specifically, TOTB consists of 225 videos (86K frames) from 15 diverse transparent object categories. Each sequence is manually labeled with axis-aligned bounding boxes. To the best of our knowledge, TOTB is the first benchmark dedicated to transparent object tracking. In order to understand how existing trackers perform and to provide comparison for future research on TOTB, we extensively evaluate 25 state-of-the-art tracking algorithms. The evaluation results exhibit that more efforts are needed to improve transparent object tracking. Besides, we observe some nontrivial findings from the evaluation that are discrepant with some common beliefs in opaque object tracking. For example, we find that deeper features are not always good for improvements. Moreover, to encourage future research, we introduce a novel tracker, named TransATOM, which leverages transparency features for tracking and surpasses all 25 evaluated approaches by a large margin. By releasing TOTB, we expect to facilitate future research and application of transparent object tracking in both the academia and industry.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Convolutional Neural Networks Based Remote Sensing Scene Classification under Clear and Cloudy Environments

Remote sensing (RS) scene classification has wide applications in the environmental monitoring and geological survey. In the real-world applications, the RS scene images taken by the satellite might have two scenarios: clear and cloudy environments. However, most of existing methods did not consider these two environments simultaneously. In this paper, we assume that the global and local features are iscriminative in either clear or cloudy environments. Many existing Convolution Neural Networks (CNN) based models have made excellent achievements in the image classification, however they somewhat ignored the global and local features in their network structure. In this paper, we propose a new CNN based network (named GLNet) with the Global Encoder and Local Encoder to extract the discriminative global and local features for the RS scene classification, where the constraints for inter-class dispersion and intra-class compactness are embedded in the GLNet training. The experimental results on two publicized RS scene classification datasets show that the proposed GLNet could achieve better performance based on many existing CNN backbones under both clear and cloudy environments.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Using Machine Learning to Track Objects Across Cameras

Video surveillance is one of the most important technologies used by the International Atomic Energy Agency in international safeguards. At large, complicated facilities, multiple surveillance cameras are deployed to monitor the transfer of safeguards-relevant objects across the site. During inspections, all surveillance videos are reviewed to ensure the objects are not manipulated or diverted during transfer, a laborious, time-consuming task. This work describes using deep machine learning algorithms to track objects automatically across multiple cameras, greatly improving the efficiency of the review process. The fundamental problem in this object tracking task across multiple cameras is how to associate the same object, which may show extreme intra-class variations, such as viewpoints, occlusions, and various scales, in different and even non-overlapped cameras. Object re-identification (Re-ID) in nuclear facility video surveillance is even more challenging than classic person or vehicle Re-ID problems because different instances in the same category may display an identical appearance. One observation from nuclear facility surveillance videos is that all objects must be carted (e.g., via forklift) to move. Therefore, the spatial context information of an object, which provides the feature from the carrier, is critical for the object Re-ID task. This work proposes a two-stream convolutional neural networks model that takes features of objects and their surrounding regions into account. Moreover, the custom videos usually are gleaned from different scenes from the training data, which may have extreme variations in illumination changes and/or cluttered backgrounds. Directly applying the trained model to custom videos will dramatically decrease the performance. To tackle this problem, an advanced domain adaptation technique is proposed to mitigate the gap between the data taken from different scenes. The proposed framework will track objects of interest across a nuclear complex. The resulting tracks can be used in further analyses, such as event/activity recognition, anomaly detection, etc.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗
DOE OSTI2021

Point Adversarial Self-Mining: A Simple Method for Facial Expression Recognition

In this article, we propose a simple yet effective approach, called point adversarial self mining (PASM), to improve the recognition accuracy in facial expression recognition (FER). Unlike previous works focusing on designing specific architectures or loss functions to solve this problem, PASM boosts the network capability by simulating human learning processes: providing updated learning materials and guidance from more capable teachers. Specifically, to generate new learning materials, PASM leverages a point adversarial attack method and a trained teacher network to locate the most informative position related to the target task, generating harder learning samples to refine the network. The searched position is highly adaptive since it considers both the statistical information of each sample and the teacher network capability. Other than being provided new learning materials, the student network also receives guidance from the teacher network. After the student network finishes training, the student network changes its role and acts as a teacher, generating new learning materials and providing stronger guidance to train a better student network. Here, the adaptive learning materials generation and teacher/student update can be conducted more than one time, improving the network capability iteratively. Extensive experimental results validate the efficacy of our method over the existing state of the arts for FER.

97 MATHEMATICS AND COMPUTING↗