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Zhang, He

Publications and source records attributed to Zhang, He.

At least 19 records
All sourcesNASA NTRSDOE OSTI
DOE OSTI2025

Harnessing the power of gradient-based simulations for multi-objective optimization in particle accelerators

Abstract Particle accelerator operation requires simultaneous optimization of multiple objectives. Multi-objective optimization (MOO) is particularly challenging due to trade-offs between the objectives. Evolutionary algorithms, such as genetic algorithms (GAs), have been leveraged for many optimization problems, however, they do not apply to complex control problems by design. This paper demonstrates the power of differentiability for solving MOO problems in particle accelerators using a deep differentiable reinforcement learning (DDRL) algorithm. We compare the DDRL algorithm with model-free reinforcement learning (MFRL), GA, and Bayesian optimization (BO) for simultaneous optimization of heat load and trip rates in the continuous electron beam accelerator facility. The underlying problem enforces strict constraints on both individual states and actions as well as cumulative (global) constraints on energy requirements of the beam. Using historical accelerator data, we develop a physics-based surrogate model which is differentiable and allows for back-propagation of gradients. The results are evaluated in the form of a Pareto-front with two objectives. We show that the DDRL outperforms MFRL, BO, and GA on high dimensional problems.

43 PARTICLE ACCELERATORS↗
DOE OSTI2024

cppTPSA/pyTPSA: a C++/Python package for truncated power series algebra

The truncated power series algebra (TPSA), also referred to as differential algebra (DA), is a well-established and widely used method in particle accelerator physics and astronomy. The most straightforward usage of TPSA/DA is to calculate the Taylor expansion of a given function at a specific point up to order ?. In recent years, as the application of TPSA/TA has been extended to other fields, a reusable implementation of TPSA/DA as a modern C++ library or other high level programming language like Python has become desirable. The cppTPSA package implements TPSA/DA in C++11 and provides developers a convenient library with which to build advanced TPSA/DA-based methods. A Python 3 library, pyTPSA, has also been developed based on the C++ lib.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

JSPEC: A Program for IBS and Electron Cooling Simulation

JSPEC (JLab Simulation Package on Electron Cooling) is an open-source C++ program developed at Jefferson Lab to simulate the evolution of the ion beam under the intrabeam scattering effect and/or the electron cooling effect. JSPEC includes various models of the ion beam, the electron beam, and the friction force, aiming to reflect the latest advances in the field and to provide a useful tool to the community. JSPEC has been benchmarked against other cooling simulation codes and experimental data. It has been used to support the cooler design for JLEIC, an earlier JLab design for the Electron-Ion Collider. A Python wrapper of the C++ code, pyJSPEC, for Python 3.x environment has also been developed and released. It allows users to run JSPEC simulations in a Python environment and makes it possible for JSPEC to collaborate with other accelerator and beam modeling programs, as well as plentiful Python tools in data visualization, optimization, machine learning, etc. In this report, we introduce the features of JSPEC, with a focus on the latest development, and demonstrate how to use JSPEC and pyJSPEC with sample codes and numerical examples.

Accelerator Physics↗
DOE OSTI2023

Perspective of a Dual Energy Electron Storage Ring Cooler for a Hadron Beam Cooling

A dual energy electron storage ring cooler was proposed and explored to maintain a good hadron beam quality against intra-beam scattering and all heating sources in a collider. The unique configuration of this concept is that electron beam in the low energy section extracts heat away from the hadron beam through Coulomb interaction while electron beam in the high energy section releases heat through its intrinsic synchrotron radiation damping. The early design employs a magnetized electron beam for achieving a high cooling efficiency. Recently, a non-magnetized cooling electron beam was explored in this dual energy cooler. It could meet the same cooling requirements while lowering the risks. This paper presents study results on design and optimization of a dual energy storage ring cooler and describes the trade-offs between using magnetized and non-magnetized cooling for this approach.

Lin, Fanglei↗
DOE OSTI2023

The underappreciated importance of solar radiation in constraining spring phenology of temperate ecosystems in the Northern and Eastern United States

Spring phenology of temperate ecosystems is highly sensitive to climate change, generating various impacts on many important terrestrial surface biophysical processes. Although various prognostic models relying on environmental variables of temperature and photoperiod have been developed for spring phenology, comprehensive ecosystem-scale evaluations over large landscapes and long-time periods remain lacking. Further, environmental variables other than temperature and photoperiod might also importantly constrain spring phenology modelling but remain under-investigation. To address these issues, we leveraged around 20-years datasets of environmental variables (from Daymet and GLDAS products) and the spring phenology metric (i.e., the greenup date) respectively derived from MODIS and PhenoCams across 108 sites in the Northern and Eastern United States. We firstly cross-compared MODIS-derived greenup date with official PhenoCams product with high accuracy (R 2 = 0.70). Then, we evaluated the three prognostic models (i.e., Growing Degree Date (GDD), Sequential (SEQ) and optimality-based (OPT)) with MODIS-derived spring phenology, assessed the model residuals and their associations with soil moisture, rainfall, and solar radiation, and revised the two photoperiod-relevant models (SEQ, OPT) by replacing the daylength variable with solar radiation, which was found to contribute the most to model residuals. We found that 1) all models demonstrated good capability in characterizing spring phenology, with OPT performing the best (RMSE = 8.04 ± 5.05 days), followed by SEQ (RMSE = 10.57 ± 7.77 days) and GDD (RMSE = 10.84 ± 8.42 days), 2) all models displayed high model residuals showing tight correlation with solar radiation (r = 0.45–0.75), and 3) the revised models that included solar radiation significantly performed better with an RMSE reduction by 22.08%. Such results are likely because solar radiation better constrains early growing season plant photosynthesis than photoperiod, supporting the hypothesis of spring phenology as an adaptive strategy to maximize photosynthetic carbon gain (approximated by solar radiation) while minimizing frost damage risk (captured by temperature). Collectively, our study here reveals the underappreciated importance of solar radiation in constraining spring phenology of temperate ecosystems, and suggests ways to improve spring phenology modelling and other phenology-related ecological processes.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2023

Mapping foliar photosynthetic capacity in sub-tropical and tropical forests with UAS-based imaging spectroscopy: Scaling from leaf to canopy

Accurate understanding of the variability in foliar physiological traits across landscapes is critical to improve parameterization and evaluation of terrestrial biosphere models (TBMs) that seek to represent the response of terrestrial ecosystems to a changing climate. Numerous studies suggest imaging spectroscopy can characterize foliar biochemical and morphological traits at the canopy scale, but there is only limited evidence for retrieving canopy photosynthetic capacity (e.g., maximum carboxylation rate, V c,max and maximum electron transport rate, J max ). Moreover, the effect of canopy structure within forest communities on scaling up spectra-trait relationships from leaf to canopy level is not well known. To advance the spectra-trait approach and enable the estimation of key traits using remote sensing, we collected imaging spectroscopy data from an Unoccupied Aerial System (UAS) platform over two forest sites in China (a subtropical forest in Mt. Dinghu and a tropical rainforest in Xishuangbanna). At these sites, we also collected ground measurements of leaf spectra and traits, including biochemical (leaf nitrogen, phosphorus, chlorophyll, and water content), morphological (leaf mass per area, LMA) and physiological (V c,max25 and J max25 ) traits (n=135 tree-crowns from 42 species across two sites). Using a partial least-squares regression (PLSR) approach, we built and tested spectra-trait models with repeated cross-validation. The spectral models developed with leaf spectra were directly transferred to canopy spectra to evaluate the effect of canopy structure. Here we further applied canopy spectral models to map these traits at individual tree-crown scale. The results demonstrate that (1) UAS-based canopy spectra can be used to estimate V c,max (R 2 =0.55, nRMSE=11.79%), Jmax (R 2 =0.54, nRMSE=12.34%), and five additional foliar traits (R 2 =0.38-0.60, nRMSE=10.11-13.56%) at the tree-crown scale with demonstrated generalizability across two sites; (2) canopy structure strongly affects the spectratrait relationships from leaf to canopy level, but the effects vary considerably across foliar traits and cannot be well captured by the 4SAIL canopy radiative transfer model. UAS-based imaging spectroscopy maps large variability in all foliar traits (including physiological traits) with spatially explicit information, reproducing the field-observed inter- and intra-specific variations. These results demonstrate the capability of using UAS-based imaging spectroscopy for characterizing the variability of foliar physiological traits at individual tree-crown scale over forest landscapes and highlight the similar generalizability but different biophysical mechanisms underlying spectra-trait relationships at leaf and canopy levels.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2022

Nuclear Physics Exascale Requirements Review: An Office of Science Review sponsored jointly by Advanced Scientific Computing Research and Nuclear Physics, June 15 - 17, 2016, Gaithersburg, Maryland

Imagine being able to predict — with unprecedented accuracy and precision — the structure of the proton and neutron, and the forces between them, directly from the dynamics of quarks and gluons, and then using this information in calculations of the structure and reactions of atomic nuclei and of the properties of dense neutron stars (NSs). Also imagine discovering new and exotic states of matter, and new laws of nature, by being able to collect more experimental data than we dream possible today, analyzing it in real time to feed back into an experiment, and curating the data with full tracking capabilities and with fully distributed data mining capabilities. Making this vision a reality would improve basic scientific understanding, enabling us to precisely calculate, for example, the spectrum of gravity waves emitted during NS coalescence, and would have important societal applications in nuclear energy research, stockpile stewardship, and other areas. This review presents the components and characteristics of the exascale computing ecosystems necessary to realize this vision.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

Establishment of a reverse transcription real-time quantitative PCR method for Getah virus detection and its application for epidemiological investigation in Shandong, China

Getah virus (GETV) is a mosquito-borne, single-stranded, positive-sense RNA virus belonging to the genus Alphavirus of the family Togaviridae . Natural infections of GETV have been identified in a variety of vertebrate species, with pathogenicity mainly in swine, horses, bovines, and foxes. The increasing spectrum of infection and the characteristic causing abortions in pregnant animals pose a serious threat to public health and the livestock economy. Therefore, there is an urgent need to establish a method that can be used for epidemiological investigation in multiple animals. In this study, a real-time reverse transcription fluorescent quantitative PCR (RT-qPCR) method combined with plaque assay was established for GETV with specific primers designed for the highly conserved region of GETV Nsp1 gene. The results showed that after optimizing the condition of RT-qPCR reaction, the minimum detection limit of the assay established in this study was 7.73 PFU/mL, and there was a good linear relationship between viral load and Cq value with a correlation coefficient ( R 2 ) of 0.998. Moreover, the method has good specificity, sensitivity, and repeatability. The established RT-qPCR is 100-fold more sensitive than the conventional RT-PCR. The best cutoff value for the method was determined to be 37.59 by receiver operating characteristic (ROC) curve analysis. The area under the curve (AUC) was 0.956. Meanwhile, we collected 2,847 serum specimens from swine, horses, bovines, sheep, and 17,080 mosquito specimens in Shandong Province in 2022. The positive detection rates by RT-qPCR were 1%, 1%, 0.2%, 0%, and 3%, respectively. In conclusion, the method was used for epidemiological investigation, which has extensive application prospects.

Cao, Xinyu↗
DOE OSTI2022

A backward SDE method for uncertainty quantification in deep learning

Here, we develop a backward stochastic differential equation based probabilistic machine learning method, which formulates a class of stochastic neural networks as a stochastic optimal control problem. An efficient stochastic gradient descent algorithm is introduced with the gradient computed through a backward stochastic differential equation. Convergence analysis for stochastic gradient descent optimization and numerical experiments for applications of stochastic neural networks are carried out to validate our methodology in both theory and performance.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Implementation of an Orographic Drag Scheme Considering Orographic Anisotropy in All Flow Directions in the Earth System Model CAS‐ESM 2.0

Abstract A reasonable representation of orographic anisotropy in earth system models is vital for improving weather and climate modeling. In this study, we implement the orographic drag scheme, including 3‐D orographic anisotropy (3D‐AFD), into the Chinese Academy of Sciences Earth System Model version 2 (CAS‐ESM 2.0). Three groups of simulations named sensitivity run, medium‐range forecast, and seasonal forecast respectively are conducted using the updated CAS‐ESM model and validated against station observation and reanalysis data. These simulations are run using the three schemes—3D‐AFD scheme, the 3D orographic anisotropy scheme for the eight‐direction (3D‐8x), and the 2D isotropic scheme (2D)—to compare their performance in CAS‐ESM 2.0. Sensitivity runs show that the 3D‐AFD provide more continuous transition of calculated drag as function of wind direction than the 3D‐8x, while the drag calculated using the 2D scheme show no variation with change of wind direction. Enhanced drag in the medium range and seasonal forecast using the updated CAS‐ESM alleviates part of the winter wind speed bias over the Tibetan Plateau (TP) and the cold bias over TP and the Siberian polar region. It is shown that the 3D‐AFD scheme alleviates more bias than that of the 3D‐8x scheme (by wind speed reduction of 1 ∼ 2 m/s and temperature of 1 ∼ 2 K) especially in the seasonal forecast. The results suggest that reasonable representation of the orographic anisotropy is important in climate modeling.

Xie, Jinbo↗
DOE OSTI2021

JSPEC – An Open Source Program for IBS and Electron Cooling Simulation

The intrabeam scattering can affect the accumulation, the lifetime, and the property of a high-intensity beam. Electron cooling is a method to mitigate the intrabeam scattering effect. JSPEC (JLab Simulation Package on Electron Cooling) is an open-source program developed at Jefferson Lab, which includes various numerical models and friction force formulas for intrabeam scattering and electron cooling simulations. JSPEC has been benchmarked with BETACOOL and experimental data. In this report, we will introduce what features JSPEC provides to the users and how it carries out the computations. Numerical examples are presented to demonstrate the performance and the validity of JSPEC.

Zhang, He↗
DOE OSTI2021

JSPEC: A Program for IBS and Electron Cooling Simulation

Intrabeam scattering is an important collective effect that can deteriorate the properties of a high-intensity beam, and electron cooling is a method to mitigate the IBS effect. JSPEC (JLab Simulation Package for Electron Cooling) is an open-source program developed at Jefferson Lab, which simulates the evolution of the ion beam under the IBS and/or the electron cooling effect. JSPEC has been benchmarked with BETACOOL and experimental data. In this report, we will introduce the features of JSPEC, including the friction force calculation, the IBS expansion rate and electron cooling rate calculation, and the beam-dynamic simulations for the electron cooling process; explain how to set up the simulations in JSPEC; and demonstrate the benchmarking results.

Zhang, He↗
DOE OSTI2020

Analyzing the Validity of Brazilian Testing Using Digital Image Correlation and Numerical Simulation Techniques

Characterizing the mechanical behavior of rocks plays a crucial role to optimize the fracturing process in unconventional reservoirs. However, due to the intrinsic anisotropy and heterogeneity in unconventional resources, fracture process prediction remains the most significant challenge for sustainable and economic hydrocarbon production. During the deformation tracking under compression, deploying conventional methods (strain gauge, extensometer, etc.) is insufficient to measure the deformation since the physical attachment of the device is restricted to the size of the sample, monitoring limited point-wise deformation, producing difficulties in data retrieval, and a tendency to lose track in failure points, etc. Where conventional methods are limited, the application of digital image correlation (DIC) provides detailed and additional information of strain evolution and fracture patterns under loading. DIC is an image-based optical method that records an object with a camera and monitors the random contrast speckle pattern painted on the facing surface of the specimen. To overcome the existing limitations, this paper presents numerical modeling of Brazilian disc tests under quasi-static conditions to understand the full-field deformation behaviors and finally, it is validated by DIC. As the direct tensile test has limitations in sample preparation and test execution, the Brazilian testing principle is commonly used to evaluate indirectly the tensile strength of rocks. The two-dimensional numerical model was built to predict the stress distribution and full-field deformation on Brazilian disc under compression based on the assumptions of a homogenous, isotropic and linear elastic material. The uniaxial compression test was conducted using the DIC technique to determine the elastic properties of Spider Berea sandstone, which were used as inputs for the simulation model. The model was verified by the analytical solution and compared with the digital image correlation. The numerical simulation results showed that the solutions matched reasonably with the analytical solutions where the maximum deviation of stress distribution was obtained as 14.59%. The strain evolution (normal and shear strains) and displacements along the central horizontal and vertical planes were investigated in three distinguishable percentages of peak loads (20%, 40%, and 90%) to understand the deformation behaviors in rock. The simulation results demonstrated that the strain evolution contours consistently matched with DIC generated contours with a reasonable agreement. The changes in displacement along the central horizontal and vertical planes showed that numerical simulation and DIC generated experimental results were repeatable and matched closely. In terms of validation, Brazilian testing to measure the indirect tensile strength of rocks is still an issue of debate. The numerical model of fracture propagation supported by digital image correlation from this study can be used to explain the fracturing process in the homogeneous material and can be extended to non-homogeneous cases by incorporating heterogeneity, which is essential for rock mechanics field applications.

58 GEOSCIENCES↗
DOE OSTI2019

Semi-artificial Photosynthetic CO 2 Reduction through Purple Membrane Re-engineering with Semiconductor

The engineering of biological pathways with man-made materials provides inspiring blueprints for sustainable fuel production. Here, we leverage a top-down cellular engineering strategy to develop a new semi artificial photosynthetic paradigm for carbon dioxide reduction via enveloping Halobacterium purple membrane-derived vesicles over Pd-deposited hollow porous TiO 2 nanoparticles. In this biohybrid, the membrane protein, bacteriorhodopsin, not only retains its native biological function of pumping protons but also acts as a photosensitizer that injects light-excited electrons into the conduction band of TiO 2 . As such, the electrons trapped on Pd cocatalysts and the protons accumulated inside the cytomimetic architecture act in concert to reduce CO 2 via proton-coupled multielectron transfer processes. This study suggests an alternative toolkit for developing robust semi-artificial photosynthetic systems for solar energy conversion.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2019

Relationship between KRAS mutations and dual time point {sup 18}F-FDG PET/CT imaging in colorectal liver metastases

Purpose: To investigate the association between metabolic parameters of dual time point {sup 18}F-FDG PET/CT imaging and Kirsten rat sarcoma (KRAS) mutation status in colorectal liver metastases (CRLM). Methods: Forty-nine colorectal cancer patients with 87 liver metastatic lesions were included in this retrospective study. KRAS gene mutation tests were also performed for all the patients. The maximum standardized uptake value (SUV{sub max}) was measured for each hepatic metastatic lesion on both early and delayed scans, and the change of SUV{sub max} (ΔSUV{sub max}) and retention index (RI) were calculated. Uni-variate and multi-variate analyses were employed to determine the relationship between any PET/CT parameters and KRAS mutation status. Results: Thirty-seven (42.5%) liver metastatic lesions harboring KRAS mutations were identified. The SUV{sub max} of CRLM with KRAS mutation both on early and delayed scans was significantly higher than those with wild-type KRAS (10.7 ± 6.0 vs. 7.8 ± 3.3, P = 0.002; 15.5 ± 10.1 vs. 10.0 ± 4.2, P < 0.001, respectively). Compared with wild-type KRAS CRLM, ΔSUV{sub max} and RI (%) of CRLM with KRAS mutation were also significantly higher than those with wild-type KRAS (4.8 ± 4.7 vs. 2.2 ± 2.0, P < 0.001; 45.3 ± 28.2 vs. 29.6 ± 24.7, P = 0.003, respectively). Multi-variate analyses showed that the SUV{sub max} on both early and delayed scans, ΔSUV{sub max}, and RI (%) were the 4 independent factors to predict CRLM patients harboring KRAS mutations. Conclusion: The SUV{sub max} on both early and delayed scans, ΔSUV{sub max}, and RI (%) may be the 4 independent factors to predict CRLM patients harboring KRAS mutations.

62 RADIOLOGY AND NUCLEAR MEDICINE↗