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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 199 records · Page 11
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Halogen Thermochemistry Assessed with Density Functional Theory: Systematic Errors, Swift Corrections and Effects on Electrochemistry

Abstract Despite its sizable errors, density functional theory (DFT) is extensively used to evaluate thermochemical properties of gases, liquids and their interfaces with solids. As numerous halogen‐containing compounds appear as reactants, products and/or electrolytes in electrochemical reactions, and ionic effects are currently an active area of research, it is important to evaluate the accuracy of DFT for halogen thermochemistry. Herein, we assess the formation energies of interhalogens, hydrogen halides, diatomic and atomic halogens and their ions using six widespread functionals at the GGA, meta‐GGA and hybrid levels. We observe that DFT errors with respect to experiments are correlated with the electronegativity of the species and there are systematic trends across functionals, such that swift corrections were devised. Specifically, the average of the mean absolute errors for the six functionals decreased from 0.19 eV before the corrections to 0.08 eV after them. Besides, the overall maximum absolute error (MAX) decreased from 0.76 to 0.44 eV and the average of the MAXs decreased from 0.51 to 0.24 eV. Finally, we illustrate the qualitative and quantitative impact of gas‐phase errors on the predictions of surface Pourbaix diagrams.

Chemistry↗
DOE OSTI2021

A multidimensional stability framework enhances interpretation and comparison of carbon cycling response to disturbance

Abstract The concept of stability is central to the study and sustainability of vital ecosystem goods and services as disturbances increase globally. While ecosystem ecologists, including carbon (C) cycling scientists, have long‐considered multiple dimensions of disturbance response, our discipline lacks an agreed‐upon analytical framework for characterizing multidimensional stability. Here, we advocate for the broader adoption of a standardized and normalized multidimensional stability framework for analyzing disturbance response. This framework includes four dimensions of stability: the degree of initial change in C fluxes (i.e., resistance ); rate (i.e., resilience ) and variability (i.e., temporal stability ) of return to pre‐disturbance C fluxes; and the extent of return to pre‐disturbance C fluxes (i.e., recovery ). Using this framework, we highlight findings not readily seen from analysis of absolute fluxes, including trade‐offs between initial and long‐term C flux responses to disturbance; different overall stability profiles among fluxes; and, using a pilot dataset, similar relative stability of net primary production following fire and insect disturbances. We conclude that ecosystem ecologists’ embrace of a unifying multidimensional stability framework as a complement to approaches focused on absolute C fluxes could advance global change research by aiding in the novel interpretation, comprehensive synthesis, and improved forecasting of ecosystems’ response to an increasing array of disturbances.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

The impact of alkali‐ion intercalation on redox chemistry and mechanical deformations: Case study on intercalation of Li, Na, and K ions into FePO 4 cathode

Abstract Batteries made of charge carriers from Earth‐crust abundant materials (e.g., Na, K, and Mg) have received extensive attention as an alternative to Li‐ion batteries for grid storage. However, a lack of understanding of the behavior of these larger ions in the electrode materials hinders the development of electrode structures suitable for these large ions. In this study, we investigate the impact of alkali ions (Li, Na, and K) on the redox chemistry and mechanical deformations of iron phosphate composite cathodes by using electrochemical techniques and in situ digital image correlation. Na‐ion and Li‐ion intercalation demonstrate a nearly linear correlation between electrochemical strains and the state of charge and discharge. The strain development shows nonlinear dependance on the state of charge and discharge for K ions. Strain rate calculations show that K ion intercalation results in a progressive increase in the strain rate for all cycles. Li and Na intercalation induce nearly constant strain rates with the exception of the first discharge cycle of Na intercalation. When the same amount of ions are inserted into the electrode, the electrode shows the lowest strain generation upon Li intercalation compared to larger alkali ions. Na and K ions induce similar volumetric changes in the electrode when the state of charge and discharge is around 30%. Although the electrode experiences larger absolute strain generation at the end of the discharge cycles upon Na intercalation, strain rates were found to be greater for K ions. Potential‐dependent behaviors also demonstrate more sluggish redox reactions during K intercalation, compared to Li and Na. Our quantitative analysis suggests that the strain rate, rather than the absolute value of strain, is the critical factor in amorphization of the crystalline electrode.

25 ENERGY STORAGE↗
DOE OSTI2020

Application of radiochromic gel dosimetry to commissioning of a megavoltage research linear accelerator for small–field animal irradiation studies

To develop and implement an efficient and accurate commissioning procedure for small-field static beam animal irradiation studies on an MV research linear accelerator (Linatron-M9) using radiochromic gel dosimetry. The research linear accelerator (Linatron-M9) is a 9 MV linac with a static fixed collimator opening of 5.08 cm diameter. Lead collimators were manually placed to create smaller fields of 2 × 2 cm 2 , 1 × 1 cm 2 , and 0.5 × 0.5 cm 2 . Relative dosimetry measurements were performed, including profiles, percent depth dose (PDD) curves, beam divergence, and relative output factors using various dosimetry tools, including a small volume ionization chamber (A14), GAFCHROMIC™ EBT3 film, and Clearview gel dosimeters. The gel dosimeter was used to provide a 3D volumetric reference of the irradiated fields. The Linatron profiles and relative output factors were extracted at a reference depth of 2 cm with the output factor measured relative to the 2 × 2 cm 2 reference field. Absolute dosimetry was performed using A14 ionization chamber measurements, which were verified using a national standards laboratory remote dosimetry service. Absolute dosimetry measurements were confirmed within 1.4% (k = 2, 95% confidence = 5%). The relative output factor of the small fields measured with films and gels agreed with a maximum relative percent error difference between the two methods of 1.1 % for the 1 × 1 cm 2 field and 4.3 % for the 0.5 × 0.5 cm 2 field. These relative errors were primarily due to the variability in the collimator positioning. The measured beam profiles demonstrated excellent agreement for beam size (measured as FWHM), within approximately 0.8 mm (or less). Film measurements were more accurate in the penumbra region due to the film’s finer resolution compared with the gel dosimeter. Following the van Dyk criteria, the PDD values of the film and gel measurements agree within 11% in the buildup region starting from 0.5 cm depth and within 2.6 % beyond maximum dose and into the fall-off region for depths up to 5 cm. The 2D beam profile isodose lines agree within 0.5 mm in all regions for the 0.5 × 0.5 cm 2 and the 1 × 1 cm 2 fields and within 1 mm for the larger field of 2 × 2 cm 2 . The 2D PDD curves agree within approximately 2% of the maximum in the typical therapy region (1–4 cm) for the 1 × 1 cm 2 and 2 × 2 cm 2 and within 5% for the 0.5 × 0.5 cm 2 field. This work provides a commissioning process to measure the beam characteristics of a fixed beam MV accelerator with detailed dosimetric evaluation for its implementation in megavoltage small animal irradiation studies. Radiochromic gel dosimeters are efficient small-field relative dosimetry tools providing 3D dose measurements allowing for full representation of dose, dosimeter misalignment corrections and high reproducibility with low inter-dosimeter variability. Altogether, radiochromic gels are valuable for fast, full relative dosimetry commissioning in comparison to films for application in high-energy small-field animal irradiation studies.

62 RADIOLOGY AND NUCLEAR MEDICINE↗
DOE OSTI2022

Automated detection of photovoltaic cleaning events: A performance comparison of techniques as applied to a broad set of labeled photovoltaic data sets

Extracting accurate soiling loss information from photovoltaic (PV) production data first requires segmenting the time series data per natural or manually occurring cleaning events. Maintenance logs are often incomplete, rain data are often unavailable, and the debate on rain thresholds for cleaning and dew or wind cleanings is still ongoing. The present work aims to overtake these issues by improving automated methods to detect these cleaning events and therefore improve extraction of soiling loss information. Time series power production data from 22 PV inverters were labeled for natural or manually occurring cleaning events. The data sets were carefully selected to include varying degrees of soiling, cleaning events, and noise. Several algorithms, including filtering logic and change point detection, were examined for efficacy at detecting the labeled cleanings. All the methods introduced except for changepoint detection showed significant improvement at detecting the labeled cleaning events per the mean F 1 score. Furthermore, the highest performing cleaning detection algorithm achieved an absolute increase in the mean F 1 score of 43% over the default version of the RdTools stochastic rate and recovery (SRR) algorithm. The highest performing algorithm included irradiance filtering and a cleaning detection threshold, adjusted based on the 40-day centered rolling median of the absolute day-to-day deviations in the daily performance index (PI). Furthermore, these improvements are promising as cleaning detection is an essential step in the automated analysis of PV soiling.

14 SOLAR ENERGY↗
DOE OSTI2024

Field‐representative evaluation of PID‐polarization in TOPCon PV modules by accelerated stress testing

Abstract Potential‐induced degradation‐polarization (PID‐p) can reduce module power, but how to project the extent to which PID‐p may occur in field conditions considering the factors of system voltage, condensed moisture, temperature, and illumination has not been clarified. Using tunnel oxide passivated contact (TOPCon) modules, this work demonstrates a method to test full‐size crystalline silicon PV modules for PID‐p to provide field‐representative results. In initial screening tests with positive or negative 1000 V electrical bias applied at 60°C for 96 h using Al foil electrodes on the glass surfaces, the module type exhibited reversible PID‐p only on the front face when the cell circuit was in negative voltage potential. No PID was detected on the rear after testing in either polarity. We then evaluated the PID‐p sensitivity on the front side under different UV irradiances while maintaining the glass surface wet to estimate real‐world susceptibility to PID‐p. The magnitude of the observed behavior was fit using a previously developed charge transfer and depletion by light model. Whereas power loss with −1000 V applied to the cell circuit at 60°C for 96 h in the dark was about 30%, testing the module front under 0.051 W·m −2 nm −1 at 340 nm UVA irradiation using fluorescent tubes, the mean degradation was only 3%. When the modules were tested in the dark for PID‐p with in situ dark current–voltage (I‐V) characterization, the thermal activation energy for degradation was 0.71 eV; for recovery in the dark, it was 0.58 eV. Whereas recovery from the degraded state at 60°C in the dark without voltage bias was 5% absolute in 38 h, rapid recovery of about 5% absolute was observed with 1000 W·s/m 2 exposure at 25°C using a flash tester.

14 SOLAR ENERGY↗
DOE OSTI2021

Lowering post‐construction yield assessment uncertainty through better wind plant power curves

Abstract Many operational analyses of wind power plants require a statistical relationship, which can be called the wind plant power curve, to be developed between wind plant energy production and concurrent atmospheric variables. Currently, a univariate linear regression at monthly resolution is the industry standard for post‐construction yield assessments. Here, we evaluate the benefits in augmenting this conventional approach by testing alternative regressions performed with multiple inputs, at a finer time resolution, and using nonlinear machine‐learning algorithms. We utilize the National Renewable Energy Laboratory's open‐source software package OpenOA to assess wind plant power curves for 10 wind plants. When a univariate generalized additive model at daily or hourly resolution is used, regression uncertainty is reduced, in absolute terms, by up to 1.0 % and 1.2 % (corresponding to a −59 % and −80 % relative change), respectively, compared to a univariate linear regression at monthly resolution; also, a more accurate assessment of the mean long‐term wind plant production is achieved. Additional input variables also reduce the regression uncertainty: when temperature is added as an input to the conventional monthly linear regression, the operational analysis uncertainty connected to regression is reduced, in absolute terms, by up to 0.5 % (−43 % relative change) for wind power plants with strong seasonal variability. Adding input variables to the machine‐learning model at daily resolution can further reduce regression uncertainty, with up to a −10 % relative change. Based on these results, we conclude that a multivariate nonlinear regression at daily or hourly resolution should be recommended for assessing wind plant power curves.

17 WIND ENERGY↗
DOE OSTI2024

Challenges for monitoring and data analytics in a leadership public data repository

The availability and disposition of data has assumed increasing importance in large-scale computational science. Data repositories are evolving to meet new classes of requirements: compliance with government access guidelines, support for reproducibility of experimental results, and long-term availability of data products. The Constellation public data repository at the Oak Ridge Leadership Computing Facility faces these issues while being situated in one of the most productive data centers in the world. While monitoring and operational data analysis are ingrained in the operation of the OLCF’s large-scale high performance computing platforms, data repositories do not have this history of support. Problems faced by Constellation range from data size (over 7 petabytes in current holdings) to analytic complexity (detailed curation is both absolutely necessary for many data sets and absolutely impossible for humans to accomplish in any practical manner) to deployment environment (OLCF storage resources are oriented toward the needs of the compute platforms). In this paper we describe some of the challenges for collecting monitoring and analytic data from a leadership public data repository. We also discuss various strategies we are pursuing in order to address these challenges, from manual data collection to plans for introducing machine learning-based curatorial techniques.

Widener, Patrick [ORNL] (ORCID:0000000258820816)↗
DOE OSTI2022

Amplitude analysis and branching fraction measurement of the decay $D_s^{+}$ → $π^+π^0π^0$

Using a data set corresponding to an integrated luminosity of 6.32 fb –1 recorded by the BESIII detector at center-of-mass energies between 4.178 and 4.226 GeV, an amplitude analysis of the decay $D_s^{+}$ → $π^+π^0π^0$ is performed, and the relative fractions and phases of different intermediate processes are determined. The absolute branching fraction of the decay $D_s^{+}$ → $π^+π^0π^0$ is measured to be (0.50 ± 0.04 stat ± 0.02 syst )%. The absolute branching fraction of the intermediate process $D_s^{+}$ → $f_o$(980)$π^+$, $f_o$(980) → $π^oπ^o$ is determined to be (0.28 ± 0.04 stat ± 0.04 syst )%.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2026

Measurement of differential t-channel single top (anti)quark production cross-sections at 13 TeV with the ATLAS detector

The production of single top quarks and top antiquarks via the t-channel exchange of a virtual W boson is measured in proton-proton collisions at a centre-of-mass energy of 13 TeV at the Large Hadron Collider. The full Run 2 data sample recorded with the ATLAS detector in the years 2015–2018 is used, corresponding to an integrated luminosity of 140 fb−1. The absolute and normalised production cross-sections are measured differentially as a function of the transverse momentum and absolute rapidity of the top quark and top antiquark. In addition, the ratio of top quark to top antiquark production cross-sections is measured. The measured distributions are compared with next-to-leading-order quantum chromodynamics predictions obtained with different combinations of matrix-element generators, parton-shower programs and proton parton distribution functions, as well as to next-to-next-to-leading-order calculations. Overall, good agreement is observed between the measurements and the theoretical predictions. For most measured distributions, the sensitivity to differences between the predictions is limited by the systematic uncertainties in the measurement. The measured differential distributions are also interpreted in an effective field theory approach to constrain the Wilson-Coefficient CQq3,1$$ {C}_{Qq}^{3,1} $$ associated with a four-quark operator. The interpretation accounts for the effect of the selection efficiency, which is altered significantly by non-zero contributions from CQq3,1$$ {C}_{Qq}^{3,1} $$.

Aad, G↗
DOE OSTI2023

Exclusive dielectron production in ultraperipheral Pb+Pb collisions at $\sqrt{s_{\textrm{NN}}}$ = 5.02 TeV with ATLAS

Exclusive production of dielectron pairs, γγ → e + e – , is studied using $\mathcal{L}_{int}$ = 1.72 nb –1 of data from ultraperipheral collisions of lead nuclei at $\sqrt{s_{NN}}$ = 5.02 TeV recorded by the ATLAS detector at the LHC. The process of interest proceeds via photon–photon interactions in the strong electromagnetic fields of relativistic lead nuclei. Dielectron production is measured in the fiducial region defined by following requirements: electron transverse momentum $p^{e}_{T}$ > 2.5 GeV, absolute electron pseudorapidity |η e | < 2.5, dielectron invariant mass m ee > 5 GeV, and dielectron transverse momentum $p^{ee}_{T}$ < 2 GeV. Differential cross-sections are measured as a function of m ee , average $p^{e}_{T}$, absolute dielectron rapidity |y ee |, and scattering angle in the dielectron rest frame, |cos θ*|, in the inclusive sample, and also with a requirement of no activity in the forward direction. The total integrated fiducial cross-section is measured to be 215 ± 1 (stat) $^{+23}_{-20}$ (syst.) ± 4 (lumi.) μ b. Within experimental uncertainties the measured integrated cross-section is in good agreement with the QED predictions from the Monte Carlo programs STARLIGHT and SUPERCHIC, confirming the broad features of the initial photon fluxes. The differential cross-sections show systematic differences from these predictions which are more pronounced at high |y ee | and |cos θ*| values.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗
DOE OSTI2025

Reflection grating fabrication for the Rockets for Extended-source X-ray Spectroscopy

Abstract The Rockets for Extended-source X-ray Spectroscopy (tREXS) grating spectrograph uses modules of reflection gratings to collect spectroscopic data from extended astronomical sources of soft X-rays. Two blazed master gratings were produced on silicon substrates with electron-beam lithography (EBL) and complementary nanofabrication processes that include KOH etching. Substrate-conformal imprint lithography (SCIL) was then used to create 191 replicas of the two grating masters for use in the flight instrument. Diffraction efficiency was measured for several replica gratings, which achieve a peak of$$ \varvec{>} $$ > 70% absolute efficiency near 0.22 keV and an average of$$ \varvec{\approx } $$ ≈ 50% absolute efficiency across the measured band, from 0.18 – 0.8 keV. Here we detail the nanofabrication of the grating masters, including the EBL parameters and tREXS-specific fabrication considerations, and the SCIL replication process used to generate the final instrument gratings. A discussion of grating characterization and areas for future improvement is also presented.

Astronomy & Astrophysics↗
DOE OSTI2022

Speed of Sound Measurements of Binary Mixtures of Hydrofluorocarbons [Pentafluoroethane (R-125), 1,1-Difluoroethane (R-152a), or 1,1,1,2,3,3,3-Heptafluoropropane (R-227ea)] with Hydrofluoroolefins [2,3,3,3-Tetrafluoropropene (R-1234yf) or trans-1,3,3,3-Tetrafluoropropene (R-1234ze(E))]

In this article, speed of sound data measured using a dual-path pulse-echo instrument are reported for three binary refrigerant mixtures, R-125/1234yf, R-1234yf/152a, and R-1234ze(E)/227ea, at compositions of (0.33/0.67) and (0.67/0.33) mole fraction. The speed of sound was studied at temperatures ranging from 230 K to 345 K from pressures slightly above the bubble point curve up to 20 MPa for the mixtures containing R-1234yf and 49 MPa for the R-1234ze(E)/227ea mixtures. The relative combined expanded speed of sound uncertainty ranged from 0.039 % to 0.317 % with a mean uncertainty over all state points of less than 0.10 %. The reported data are compared to the most recent mixture models in REFPROP for each blend studied. Comparisons of available mixture models for the R-125/1234yf and R-1234yf/152a blends exhibit average absolute deviation values ranging from 0.10 % to 0.27 %, and the average absolute deviations for R-1234ze(E)/227ea blends range from 0.62 % to 0.94 %. The comparisons show that only minor adjustments are required to the R-125/1234yf and R-1234yf/152a mixture models to represent the speed of sound data within its uncertainty. However, significant adjustments are needed to improve the current mixture models for the R-1234ze(E)/227ea blend. Deficiencies with the R-1234ze(E)/227ea mixture model are not unexpected since it (1) utilizes a pure-fluid EOS R-1234ze(E) that has been shown to inaccurately represent R-1234ze(E) speed of sound values and (2) uses binary interaction parameters for the chemically similar mixture of R-1234yf/227ea.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2020

Day-ahead photovoltaic power production forecasting methodology based on machine learning and statistical post-processing

A main challenge towards ensuring large-scale and seamless integration of photovoltaic systems is to improve the accuracy of energy yield forecasts, especially in grid areas of high photovoltaic shares. The scope of this paper is to address this issue by presenting a unified methodology for hourly-averaged day-ahead photovoltaic power forecasts with improved accuracy, based on data-driven machine learning techniques and statistical post-processing. More specifically, the proposed forecasting methodology framework comprised of a data quality stage, data-driven power output machine learning model development (artificial neural networks), weather clustering assessment (K-means clustering), post-processing output optimisation (linear regressive correction method) and the final performance accuracy evaluation. The results showed that the application of linear regression coefficients to the forecasted outputs of the developed day-ahead photovoltaic power production neural network improved the performance accuracy by further correcting solar irradiance forecasting biases. The resulting optimised model provided a mean absolute percentage error of 4.7% when applied to historical system datasets. Finally, the model was validated both, at a hot as well as a cold semi-arid climatic location, and the obtained results demonstrated close agreement by yielding forecasting accuracies of mean absolute percentage error of 4.7% and 6.3%, respectively. Finally, the validation analysis provides evidence that the proposed model exhibits high performance in both forecasting accuracy and stability.

42 ENGINEERING↗
DOE OSTI2023

Intact mass spectrometry screening to optimize hydroxyl radical dose for protein footprinting

Hydroxyl radical protein footprinting (HRPF) using synchrotron radiation is a well-validated method to assess protein structure in the native solution state. In this method, X-ray radiolysis of water generates hydroxyl radicals that can react with solvent accessible side chains of proteins, with mass spectrometry used to detect the resulting labeled products. An ideal footprinting dose provides sufficient labeling to measure the structure but not so much as to influence the results. The optimization of hydroxyl radical dose is typically performed using an indirect Alexa488 fluorescence assay sensitive to hydroxyl radical concentration, but full evaluation of the experiment's outcome relies upon bottom-up liquid chromatography mass spectrometry (LC-MS) measurements to directly determine sites and extent of oxidative labeling at the peptide and protein level. A direct evaluation of the extent of labeling to provide direct and absolute measurements of dose and “safe” dose ranges in terms of, for example, average numbers of labels per protein, would provide immediate feedback on experimental outcomes prior to embarking on detailed LC-MS analyses. To this end, we describe an approach to integrate intact MS screening of labeled samples immediately following exposure, along with metrics to quantify the extent of observed labeling from the intact mass spectra. Intact MS results on the model protein lysozyme were evaluated in the context of Alexa488 assay results and a bottom-up LC-MS analysis of the same samples. In conclusion, this approach provides a basis for placing delivered hydroxyl radical dose metrics on firmer technical grounds for synchrotron X-ray footprinting of proteins, with explicit parameters to increase the likelihood of a productive experimental outcome. Further, the method directs approaches to provide absolute and direct dosimetry for all types of labeling for protein footprinting.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

On the pressure and temperature dependence of adsorption densities and other thermodynamic properties in gas shales

Black shale source rocks have become a key natural gas resource in the US and China. Unlike in conventional hydrocarbon reservoirs, a significant fraction of the gas in shales is adsorbed onto the inordinate specific surface areas (SSA) of micropores inside organic matter with densities exceeding those of bulk gas by an order of magnitude. Yet, the distribution of adsorbed versus bulk gas remains poorly understood. Experiments measure excess adsorption isotherms, which are corrected to absolute adsorption amounts by a factor that involves the density, &#x3C1; abs , of the adsorption layer(s). Constant values of &#x3C1; abs are widely used in the literature but, we argue, are inconsistent with the pressure- and temperature-dependence of adsorption behavior. In this work, we propose a more reliable approach that assumes a constant volume of each adsorption layer that can be determined from the SSA of the substrate. We measure nine high-pressure methane excess adsorption isotherms up to 15 MPa for three shale samples from China and Germany at temperatures of 65, 75, and 95 °C, and low-pressure carbon dioxide and nitrogen isotherms to estimate the SSA. We also investigate another 24 isotherms at 35, 50, and 60° C or 8 Chinese shale samples and 3 isotherms at 60, 90, and 120° C for an Argentinian shale sample from the literature. A new variation of the multi-layer Ono-Kondo lattice model is introduced to derive the temperature and pressure dependent adsorption layer densities, which are subsequently used to obtain the absolute adsorption isotherms of interest. Finally, this practical methodology has the potential to significantly improve our estimates of shale gas-in-place resources, and adsorption modeling more broadly.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Assessment of human nuclear and mitochondrial DNA qPCR assays for quantification accuracy utilizing NIST SRM 2372a

In forensic DNA casework, a highly accurate real-time quantitative polymerase chain reaction (qPCR) assay is recommended per the Scientific Working Group on DNA Analysis Methods (SWGDAM) (SWGDAM Validation Guidelines for DNA Analysis Methods [1]) to determine whether a DNA sample is of sufficient quantity and robust quality to move forward with downstream short tandem repeats (STR) or sequencing analyses. Most of these assays rely on a standard curve, referred to herein and traditionally as absolute qPCR, in which an unknown is compared, relative to that curve. However, one fundamental issue with absolute qPCR is the quantifiable concentration of commercial assay standards can vary depending on (1) origin, i.e., whether from a cell line or a human subject, (2) supplier, (3) lot number, (4) shipping method, etc. In 2018, the National Institute for Standards and Technology (NIST) released a human DNA standard reference material for evaluating qPCR quantification standards, Standard Reference Material (SRM) 2372a, Romsos et al. (2018) [2] which contains three well-characterized human genomic DNA samples: Component A) a single male1 donor, Component B) a single female 1 donor, and Component C) a 1:3 male 2 :female 2 donor, each with certification data for nDNA and informational mitochondrial DNA(mtDNA)/nuclear DNA (nDNA) ratio data. The SRM 2372a was used to assess four qPCR assays: (1) Quantifiler Trio (Thermo Fisher Scientific, Waltham, MA) for nDNA quantification, (2) NovaQUANT (EMD Millipore Corporation, San Diego, CA) for nDNA and mtDNA quantification, (3) a custom duplex mtDNA assay, and (4) a custom triplex mtDNA assay. Additionally, extracts from eighteen (18) skeletal remains were tested with the latter three assays for concordance of DNA concentration and with assays (2) and (3), for the degradation state. Our assessment revealed that an accurate, efficient, and reproducible qPCR assay is dependent on (1) the quality and reliability of the DNA standard, (2) the qPCR chemistry, and (3) the specific primers, and probes (if applicable), used in an assay. Finally, our findings indicate qPCR assays may not always quantify as expected and that performance of each lot should be verified using a well-characterized DNA standard such as the NIST SRM 2372a and adjusted if warranted.

59 BASIC BIOLOGICAL SCIENCES↗