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At least 289 records · Page 16

Crystal structure and polymorphic forms of auranofin revisited

Auranofin, initially developed as a treatment for rheumatoid arthritis, is currently under extensive investigation as a potential drug for various conditions, including cancer, bacterial infections, and parasitic infections. The compound is a known inhibitor of thioredoxin reductase (TXNRD1) and related selenoproteins. Although preliminary studies on the auranofin crystal polymorphism exist, and a low-quality crystal structure has been reported, a comprehensive crystallographic characterization remains unexplored. Utilizing X-ray crystallography techniques, we conducted detailed structural analysis of auranofin and compared our findings with related organogold compounds. Implementation of Hirshfeld atom refinement (HAR) enabled a more accurate hydrogen atom positioning in the structure. The crystal packing reveals a layered arrangement stabilised by numerous weak hydrogen bonds and dispersive interactions. Notably, our attempts to reproduce the previously reported polymorphic form of auranofin, purportedly more water-soluble, were unsuccessful despite following published protocols. To our knowledge, this is the first study describing a “disappearing polymorph” phenomenon of any pharmaceutically relevant transition metal coordination compound. Our findings may have significant implications for medicinal chemistry and pharmacology of coordination complexes, suggesting the need for systematic revision of historical crystallographic data in this field.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Viscoelastic relaxation and topological fluctuations in glass-forming liquids

In this study, a method for characterizing the topological fluctuations in liquids is proposed. This approach exploits the concept of the weighted gyration tensor of a collection of particles and permits the definition of a local configurational unit (LCU). The first principal axis of the gyration tensor serves as the director of the LCU, which can be tracked and analyzed by molecular dynamics simulations. Analysis of moderately supercooled Kob–Andersen mixtures suggests that orientational relaxation of the LCU closely follows viscoelastic relaxation and exhibits a two-stage behavior. The slow relaxing component of the LCU corresponds to the structural, Maxwellian mechanical relaxation. Additionally, it is found that the mean curvature of the LCUs is approximately zero at the Maxwell relaxation time with the Gaussian curvature being negative. This observation implies that structural relaxation occurs when the configurationally stable and destabilized regions interpenetrate each other in a bicontinuous manner. Finally, the mean and Gaussian curvatures of the LCUs can serve as reduced variables for the shear stress correlation, providing a compelling proof of the close connection between viscoelastic relaxation and topological fluctuations in glass-forming liquids.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Femtosecond x-ray photon correlation spectroscopy enables direct observations of atomic-scale relaxations of glass forming liquids

Glass-forming liquids exhibit structural relaxation behaviors, reflecting underlying atomic rearrangements on a wide range of timescales and playing a crucial role in determining material properties. However, the relaxation processes on the atomic scale are not well-understood due to the experimental difficulties in directly characterizing the evolving correlations of atomic-scale order in disordered systems. Here, in this study, we harness the coherence and ultrashort pulse characteristics of an x-ray free electron laser to directly probe atomic-scale ultrafast relaxation dynamics in the model system Ge 15 Te 85 . We demonstrate an analysis strategy for determining the intermediate scattering function by extracting the contrast decay of summed scattering patterns from two rapidly successive, nearly identical femtosecond x-ray pulses generated by a split-delay system. The result indicates a full decorrelation of atomic-scale order on the sub-picosecond timescale, supporting the argument for a high-fluidity fragile state of liquid Ge 15 Te 85 above its dynamic crossover temperature. The demonstrated strategy opens an avenue for experimental studies of relaxation dynamics in liquids, glasses, and other highly disordered systems.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Driven probe particle dynamics in a bubble and pattern forming system

We numerically examine the dynamics of a probe particle driven at a constant force through an assembly of particles with competing long-range repulsion and short-range attraction that forms a bubble or stripe state. In the bubble regime, we identify several distinct types of motion, including an elastic or pinned regime where the probe particle remains inside a bubble and drags all other bubbles with it. There is also a plastic bubble phase where the bubble in which the probe particle is trapped is able to move past the adjacent bubbles. At larger drives, there is a breakthrough regime where the probe particle jumps from bubble to bubble and, in some cases, can induce correlated rotations or plastic rearrangements of the particles within the bubbles. At the highest drives, the probe particle moves sufficiently rapidly that the background particles undergo only small distortions. The distinctive dynamic flow states and the transitions between them are accompanied by signatures in the effective drag on the driven particle, jumps in the velocity–force curves, and changes in the time-dependent velocity fluctuations. We map the dynamic phase diagram for this system for varied interaction lengths, bubble sizes, and densities.

36 MATERIALS SCIENCE↗

A novel closed-form inversion of the convection–diffusion equation for rapid convection, diffusion, and source profile estimation

To simplify and routinize particle transport analysis in fusion devices, a novel closed form linear inversion of the 1-D convection diffusion equation to estimate diffusion and convection profiles D(r ⃗ ), v(r ⃗ ) and source distribution s(r ⃗ ), of a single species from measured data is derived and demonstrated on synthetic data. Profile estimates of D(r ⃗ ), v(r ⃗ ), s(r ⃗ ) and their uncertainties are given as a matrix expression constructed directly from the incoming density data of the transported species in space and time, as well as physics assumptions such as particle conservation and experimental geometry. The derived matrix expression can be applied to a pumped or non-pumped recycling species, or a non-recycling species that is effectively “pumped” by plasma-facing surfaces.

Hinson, Edward [ORNL] (ORCID:000000019713140X)↗

Closed-form expressions for unitaries of spin-adapted fermionic operators

One of the open challenges in quantum computing simulations of problems of chemical interest is the proper enforcement of spin symmetry. Efficient quantum circuits implementing unitaries generated by spin-adapted operators remain elusive, while naïve Trotterization schemes break spin symmetry. Here, in this work, we analyze the mathematical structure of spin-adapted operators and derive closed-form expressions for unitaries generated by singlet spin-adapted generalised single and double excitations. These results represent significant progress toward the economical enforcement of spin symmetry in quantum simulations.

fermionic algebra↗

Effect of hollow fiber membrane packing on the performance of modules formed with fiber tows

Membrane processes are the preferred option for many gas separations. Hollow fiber membranes are commonly used in these processes. Commercial hollow fiber membrane modules are often fabricated from small groups of fibers (i.e., a tow) that are arranged into a larger cylindrical bundle. The existence of fiber tows can lead to packing non-uniformity. This nonuniformity can result in nonideal fluid distribution in the shell and be detrimental to module performance. In this work, full three-dimensional models of flow and mass transfer within fiber bundles formed from tows have been developed. These models account for the detailed fiber arrangement within modules and are solved to evaluate module separation performance in terms of stage cut and required membrane area as a function product gas purity for carbon capture applications. Results are presented illustrating the effects of varying fiber packing arrangements within a tow and varying tow packing arrangements. Further, the results suggest smaller tows are preferred over larger tows, at fixed overall fiber packing and lower intra- and inter-tow packings are preferred. To reduce the computational cost of simulating large fiber bundles, the use of an equivalent planar bundle is proposed (EPB). A simple procedure for determining the geometry of the EPB is described and validated through comparisons of calculated performance metrics with results obtained from full three-dimensional simulations.

42 ENGINEERING↗

Close Major-merger Pairs at z = 0: Star-forming Galaxies with Pseudobulges

Abstract We present a study of star-forming galaxies (SFGs) with pseudobulges (bulges with Sérsic indexn< 2) in a local close major-merger galaxy pair sample (H-KPAIR). With data from new aperture photometries in the optical and near-infrared bands (aperture size of 7 kpc) and from the literature, we find that the mean Age of central stellar populations in Spirals with pseudobulges is consistent with that of disky galaxies and is nearly constant against the bulge-to-total ratio (B/T). Paired Spirals have a slightly lower fraction of pure disk galaxies (B/T ≤ 0.1) than their counterparts in the control sample. Compared to SFGs with classical bulges, those with pseudobulges have a higher (>2σ) mean of specific star formation rate (sSFR) enhancement (sSFR enh = 0.33 ± 0.07 versus sSFR enh = 0.12 ± 0.06) and broader scatter (by ∼1 dex). The eight SFGs that have the highest sSFR enh in the sample all have pseudobulges. A majority (69%) of paired SFGs with strong enhancement (having sSFR more than 5 times the median of the control galaxies) have pseudobulges. The Spitzer data show that the pseudobulges in these galaxies are tightly linked to nuclear/circum-nuclear starbursts. Pseudobulge SFGs in S+S and in S+E pairs have significantly (>3σ) different sSFR enhancement, with the means of sSFR enh = 0.45 ± 0.08 and −0.04 ± 0.11, respectively. We find a decrease in the sSFR enhancements with the density of the environment for SFGs with pseudobulges. Since a high fraction (5/11) of pseudobulge SFGs in S+E pairs are in rich groups/clusters (local density N 1Mpc ≥ 7), the dense environment might be the cause for their low sSFR enh .

Astronomy & Astrophysics↗

Bayesian Neural Network Variational Autoencoder Inverse Mapper (BNN-VAIM) and its application in Compton Form Factors extraction

Abstract We extend the Variational Autoencoder Inverse Mapper (VAIM) framework for the inverse problem of extracting Compton Form Factors (CFFs) from deeply virtual exclusive reactions, such as the unpolarized Deeply virtual exclusive scattering (DVCS) cross section. VAIM is an end-to-end deep learning framework to address the solution ambiguity issue in ill-posed inverse problems, which comprises of a forward mapper and a backward mapper to simulate the forward and inverse processes, respectively. In particular, we incorporate Bayesian Neural Network (BNN) into the VAIM architecture (BNN-VAIM) for uncertainty quantification. By sampling the weights and biases distributions of the BNN in the backward mapper of the VAIM, BNN-VAIM is able to estimate prediction uncertainty associated with each individual solution obtained for an ill-posed inverse problem. We first demonstrate the uncertainty quantification capability of BNN-VAIM in a toy inverse problem. Then, we apply BNN-VAIM to the inverse problem of extracting 8 CFFs from the unpolarized DVCS cross section.

Instruments & Instrumentation↗

Electron temperature relations and the direct N, O, Ne, S, and Ar abundances of 49 959 star-forming galaxies in DESI data release 2

We present the largest direct-method abundance catalogue of galaxies to date, containing measurements of 49 959 star-forming galaxies at z<0.96 from DESI (Dark Energy Spectroscopic Instrument) data release 2. By directly measuring electron temperatures across multiple ionization zones, we provide constraints on a number of electron temperature relations. Using the temperature measurements, we derive reliable abundances for N, O, Ne, S, and Ar, and measure the evolution of abundances and abundance ratios of as a function of metallicity and other galaxy properties. Our measurements include direct oxygen abundances for 49 507 galaxies, leading to the discovery of the two most metal-poor galaxies in the nearby Universe, with oxygen abundances of 12+log⁡(O/H)=6.77−0.03+0.03 dex (1.2 per cent Z⊙⁠) and 12+log⁡(O/H)=6.81−0.04+0.04 dex (1.3 per cent Z⊙⁠). We identify a rare outlier population of 24 galaxies with high-N/O ratios at low metallicity, reminiscent of galaxy abundances observed in the early Universe. We find the Ne/O ratio is constant at low metallicity but increases gradually at 12+log(O/H)>8.105±0.004 dex. We show that the S/O and Ar/O abundance ratios are strongly correlated, consistent with the expected additional Type Ia enrichment channel for S and Ar. In this work, we present an initial survey of the key properties of the sample, with this data set serving as a foundation for extensive future work on galaxy abundances at low redshift.

Scholte, D. [Edinburgh U., Inst. Astron.] (ORCID:0↗

DNA adducts form in mouse lung and liver after oral naphthalene exposure

Naphthalene is a ubiquitous combustion product and environmental contaminant with known human exposure. Chronic exposure to naphthalene vapor leads to respiratory tumor formation in rodents. Naphthalene forms DNA adducts (precursors to genotoxicity) in tissue explants but it is unclear if this occurs in vivo. Wild-type C57BL/6 mice were orally exposed to 50 mg/kg 14 C-naphthalene. Naphthalene-DNA adducts were detected by accelerator mass spectrometry at 2- to 72-h post-exposure in both lung and liver, with decreasing abundance over time. Adducts persisted even at 72-h after exposure, which indicates possible evasion of DNA repair and potential to contribute to mutagenesis.

60 APPLIED LIFE SCIENCES↗

Weak-form inference for hybrid dynamical systems in ecology

Species subject to predation and environmental threats commonly exhibit variable periods of population boom and bust over long timescales. Understanding and predicting such behaviour, especially given the inherent heterogeneity and stochasticity of exogenous driving factors over short timescales, is an ongoing challenge. A modelling paradigm gaining popularity in the ecological sciences for such multi-scale effects is to couple short-term continuous dynamics to long-term discrete updates. We develop a data-driven method utilizing weak-form equation learning to extract such hybrid governing equations for population dynamics and to estimate the requisite parameters using sparse intermittent measurements of the discrete and continuous variables. The method produces a set of short-term continuous dynamical system equations parametrized by long-term variables, and long-term discrete equations parametrized by short-term variables, allowing direct assessment of interdependencies between the two timescales. We demonstrate the utility of the method on a variety of ecological scenarios and provide extensive tests using models previously derived for epizootics experienced by the North American spongy moth ( Lymantria dispar dispar ).

54 ENVIRONMENTAL SCIENCES↗

Di-nucleons do not form bound states at heavy pion mass

We perform a high-statistics lattice QCD calculation of the low-energy two-nucleon scattering amplitudes. To address discrepancies in the literature, the calculation is performed at a heavy pion mass in the limit that the light quark masses are equal to the physical strange quark mass, 𝑚 𝜋 = 𝑚 𝐾 ≃ 714 MeV. Using a state-of-the-art momentum space method, we rule out the presence of a bound di-nucleon in both the isospin 0 (deuteron) and 1 (di-neutron) channels, in contrast with many previous results that made use of compact hexaquark creation operators. To diagnose the discrepancy, we add such hexaquark interpolating operators to our basis and find that they do not affect the determination of the two-nucleon finite-volume spectrum, and thus they do not couple to deeply bound di-nucleons that are missed by the momentum-space operators. Furthermore, we perform a high-statistics calculation of the HAL QCD potential on the same gauge ensembles and find qualitative agreement with our main results. We conclude that di-nucleons do not form bound states at heavy pion masses and that previous identification of deeply bound di-nucleons must have arisen from a misidentification of the spectrum from off-diagonal elements of a correlation function.

Physics - Physics of elementary particles and fiel↗

Nucleon axial-vector form factor and radius from radiatively corrected antineutrino scattering data

The nucleon axial-vector form factor, 𝐺 𝐴 , is critical to determine the electroweak interactions of leptons with nucleons. Important examples of processes influenced by 𝐺 𝐴 are elastic (anti)neutrino-nucleon scattering and muon capture by the proton. Sparse experimental data results in a large uncertainty on the momentum dependence of 𝐺 𝐴 and has motivated the consideration of new experimental probes and first-principles lattice quantum chromodynamics (QCD) evaluations. The comparison of new and precise theoretical predictions for 𝐺 𝐴 with future experimental data necessitates the application of radiative corrections to experimentally observable processes. We apply these corrections in the extraction of 𝐺 𝐴 and the associated axial-vector radius from the recent MINERvA antineutrino-hydrogen data, compare the effects from radiative corrections to other uncertainties in neutrino scattering experiments, and discuss the comparison of lattice QCD evaluations to experimental measurements.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Measurements of Σ electromagnetic form factors in the timelike region using the untagged initial-state radiation technique

The process e + e − → Σ + Σ ¯ − is studied from threshold up to 3.04 GeV / c 2 via the initial-state radiation technique using data with an integrated luminosity of 12.0 fb − 1 , collected at center-of-mass energies between 3.773 and 4.258 GeV with the BESIII detector at the BEPCII collider. The pair production cross sections and the effective form factors of Σ are measured in eleven Σ + Σ ¯ − invariant mass intervals from threshold to 3.04 GeV / c 2 . The results are consistent with the previous results from Belle and BESIII. Furthermore, the branching fractions of the decays J / ψ → Σ + Σ ¯ − and ψ ( 3686 ) → Σ + Σ ¯ − are determined and the obtained results are consistent with the previous results of BESIII. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

Absorptive corrections to the electromagnetic form factor in high-energy elastic proton-proton scattering

Recently, it was noted that absorptive corrections to the electromagnetic form factor in high-energy proton-proton scattering are important for the theoretical interpretation of the p ↑ p and p ↑ A analyzing power A N ( t ) measurements with the Hydrogen Jet Target polarimeter (HJET) at RHIC. Here, a concise expression for the absorptive correction was derived within the eikonal approach. The resulting analysis reveals a systematic bias, nearly independent of the beam energy, in the experimental determination of the real-to-imaginary ratio ρ when absorption effects are overlooked in the data analysis. Quantification of this bias, as ρ meas = ρ + ( 0.036 ± 0.016 ) bias , was achieved using a Regge fit applied to available proton-proton measurements of ρ meas ( s ) and σ tot meas ( s ) . Considering the potential impact of such an effect on the experimentally determined A N ( t ) , one may enhance consistency between the HJET and STAR measurements of the hadronic spin-flip amplitude. While the sign of the bias in the value of ρ aligns with the anticipated effective increase in the proton charge radius in p p scattering due to absorption, it amplifies the observed discrepancy between σ tot meas and ρ meas values at s = 13 TeV as measured in the TOTEM experiment. Evaluation (using published TOTEM data) of the measured proton-proton d σ / d t dependence on the absorptive corrections indicated that possible soft photon corrections to the hadronic amplitude slope may be essential for such data analysis. Published by the American Physical Society 2024

43 PARTICLE ACCELERATORS↗

Active microrheology and dynamic phases for pattern-forming systems with competing interactions

We consider the driven dynamics of a probe particle moving through an assembly of particles with competing long-range repulsive and short-range attractive interactions, which form crystal, stripe, labyrinth, and bubble states as the ratio of attraction to repulsion is varied. We show that the probe particle exhibits a depinning-like threshold from an elastic regime, where the probe particle is trapped by interactions with the other particles, to a plastic flow regime, where the probe particle can break bonds in the surrounding medium. For a fixed particle density, the depinning threshold and sliding velocity of the probe particle vary nonmonotonically as the attraction term is increased. A velocity minimum appears near the crystal to stripe crossover, and there is a significant increase in the depinning threshold in the bubble regime when the probe particle is strongly confined inside the bubbles. For fixed attractive interaction but increasing particle density, the behavior is also nonmonotonic, and there are jumps and drops in the velocity and depinning threshold corresponding to points at which the system transitions between different structures. There are also several distinct flow states that can be characterized by the amount of plastic deformation induced by the probe particle in the surrounding medium. Each flow state generates a different amount of effective drag on the probe particle, and there can be jumps in the velocity-force curve at transitions between the states. In conclusion, we also find that when oriented stripes are present, the probe particle can move along the stripe in an edge transport state that has a finite Hall angle.

36 MATERIALS SCIENCE↗

Invariant Forms of Dissolution Fingers

Dissolution of fractured and porous media introduces a positive feedback between fluid flow and reactant transport, leading to the emergence of pronounced, fingerlike channels. We investigate the formation of these structures using a microfluidic Hele-Shaw cell with a soluble bottom. Our experiments show that the shape of dissolution fingers is invariant and reveals itself over time as the fingers extend into the system. Here, by combining reactive-transport theory and conformal mapping techniques we derive these invariant forms. We relate these results to natural dissolution fingers in karst landscapes, and illustrate how to determine the groundwater flow rate responsible for their formation based on the finger shape.

Flows in porous media↗