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DOE OSTI2025

Efforts to stabilize composite localization elements

Localization finite elements seek to provide a robust framework for modeling ductile failure. They utilize the same constitutive model as the bulk material through the introduction of a length scale in a specialized deformation gradient that regularizes displacement discontinuity. Similar to many other elements, localization elements exhibit locking and associated pressure oscillations under incompressible plastic flow, which is a critical issue when attempting to model pressure-driven damage evolution. These issues can be drastically improved through what are essentially reduced integration techniques for the Jacobian and pressure, but there seem to be pressure-related instabilities that persist and are specific to localization elements. This memo summarizes recent efforts to mitigate and understand this problem, mostly for the 12-node composite wedge localization element in particular. At this point, it remains unclear whether the pressure fields within any localization element can be sufficiently stabilized in order to properly model failures that include softening or fracture.

36 MATERIALS SCIENCE↗

DOE OSTI2021

Arabidopsis thaliana EARLY RESPONSIVE TO DEHYDRATION 7 Localizes to Lipid Droplets via Its Senescence Domain

Lipid droplets (LDs) are neutral-lipid-containing organelles found in all kingdoms of life and are coated with proteins that carry out a vast array of functions. Compared to mammals and yeast, relatively few LD proteins have been identified in plants, particularly those associated with LDs in vegetative (non-seed) cell types. Thus, to better understand the cellular roles of LDs in plants, a more comprehensive inventory and characterization of LD proteins is required. Here, we performed a proteomics analysis of LDs isolated from drought-stressed Arabidopsis leaves and identified EARLY RESPONSIVE TO DEHYDRATION 7 (ERD7) as a putative LD protein. mCherry-tagged ERD7 localized to both LDs and the cytosol when ectopically expressed in plant cells, and the protein’s C-terminal senescence domain (SD) was both necessary and sufficient for LD targeting. Phylogenetic analysis revealed that ERD7 belongs to a six-member family in Arabidopsis that, along with homologs in other plant species, is separated into two distinct subfamilies. Notably, the SDs of proteins from each subfamily conferred targeting to either LDs or mitochondria. Further, the SD from the ERD7 homolog in humans, spartin, localized to LDs in plant cells, similar to its localization in mammals; although, in mammalian cells, spartin also conditionally localizes to other subcellular compartments, including mitochondria. Disruption of ERD7 gene expression in Arabidopsis revealed no obvious changes in LD numbers or morphology under normal growth conditions, although this does not preclude a role for ERD7 in stress-induced LD dynamics. Consistent with this possibility, a yeast two-hybrid screen using ERD7 as bait identified numerous proteins involved in stress responses, including some that have been identified in other LD proteomes. Collectively, these observations provide new insight to ERD7 and the SD-containing family of proteins in plants and suggest that ERD7 may be involved in functional aspects of plant stress response that also include localization to the LD surface.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

The Local Topological Free Energy of the SARS-CoV-2 Spike Protein

The novel coronavirus SARS-CoV-2 infects human cells using a mechanism that involves binding and structural rearrangement of its Spike protein. Understanding protein rearrangement and identifying specific amino acids where mutations affect protein rearrangement has attracted much attention for drug development. In this manuscript, we use a mathematical method to characterize the local topology/geometry of the SARS-CoV-2 Spike protein backbone. Our results show that local conformational changes in the FP, HR1, and CH domains are associated with global conformational changes in the RBD domain. The SARS-CoV-2 variants analyzed in this manuscript (alpha, beta, gamma, delta Mink, G614, N501) show differences in the local conformations of the FP, HR1, and CH domains as well. Finally, most mutations of concern are either in or in the vicinity of high local topological free energy conformations, suggesting that high local topological free energy conformations could be targets for mutations with significant impact of protein function. Namely, the residues 484, 570, 614, 796, and 969, which are present in variants of concern and are targeted as important in protein function, are predicted as such from our model.

60 APPLIED LIFE SCIENCES↗

DOE OSTI2022

SDSS-IV MaNGA: Exploring the Local Scaling Relations for N/O

We present, for the first time, the relationship between local stellar mass surface density, Σ * , and N/O derived from SDSS-IV MaNGA data, using a sample of 792,765 high signal-to-noise ratio star-forming spaxels. Using a combination of phenomenological modeling and partial correlation analysis, we find that Σ * alone is insufficient to predict the N/O in MaNGA spaxels and that there is an additional dependence on the local star formation rate surface density, Σ SFR . This effect is a factor of 3 stronger than the dependence of 12+log(O/H) on Σ SFR . Surprisingly, we find that the local N/O scaling relations also depend on the total galaxy stellar mass at fixed Σ * and the galaxy size at fixed stellar mass. We find that more compact galaxies are more nitrogen rich, even when Σ * and Σ SFR are controlled for. We show that ~50% of the variance of N/O is explained by the total stellar mass and size. Thus, the evolution of nitrogen in galaxies is set by more than just local effects and does not simply track the buildup of oxygen in galaxies. The precise form of the N/O–O/H relation is therefore sensitive to the sample of galaxies from which it is derived. This result casts doubt on the universal applicability of nitrogen-based strong-line metallicity indicators derived in the local universe.

79 ASTRONOMY AND ASTROPHYSICS↗

NASA NTRS1963

Local Heat-Transfer Measurements for Forced Convection of Hydrogen and Helium at Surface Temperatures Up to 5600 Deg R

Local values of heat-transfer coefficients and average friction coefficients were measured experimentally for helium and hydrogen gas flowing through an electrically heated tungsten tube with a length-diameter ratio of 77 for the following range of conditions: local surface temperatures up to 5600° R, local Reynolds number from 7600 to,39,500, local ratios of surface-to-bulk gas temperature up to 5.6, and heat flux up to 1,700,000 Btu per hour per square foot. A comparison of local heat-transfer coefficients for helium and hydrogen gas is made for several types of wall temperature distribution, which determines whether the data can be correlated by a Dittus-Boelter type equation. A wall temperature distribution for hydrogen is compared with one for helium and found to be essentially the same; this result demonstrates that q dissociation of hydrogen at the tube wall for wall temperatures up to 5200O R has little or no effect on the wall temperature distribution.

Maynard F Taylor↗

NASA NTRS1978

Shear flow beneath oceanic plates - Local nonsimilarity boundary layers for olivine rheology

The principle of local similarity, which has been used to model the two-dimensional boundary layers in the oceanic upper mantle, permits calculation of the temperature, velocity, and stress fields with essentially analytic techniques. Finite difference numerical methods are hard pressed to resolve the detail required by the large variation of viscosity between the lithosphere and the asthenosphere. In this paper the local similarity approximation has been justified by quantitatively evaluating the effect of nonsimilarity due to viscous heating, nonlinear temperature- and pressure-dependent rheology, buoyancy, adiabatic cooling, etc. Nonsimilar effects produce only small modifications of the locally similar boundary layers; important geophysical observables such as surface heat flux and ocean floor topography are given to better than 10 percent by the locally similar solution. A posteriori evaluations of the terms neglected in the boundary layer simplification of the complete equations have been conducted on the locally similar temperature and velocity profiles close to the spreading ridge. The boundary layer models are valid to depths of 100 km at 3 m.y. and 10 km at 0.3 m.y.

Yuen, D. A.↗

NASA NTRS1985

Texture classification by local rank correlation

A new approach to texture classification based on local rank correlation is proposed here. Its performance is compared with Laws' method which uses local convolution with feature masks. In the experiments, texture samples are classified based on their distribution of local statistics, either rank correlations or convolutions. The new method achieves generally optimal classification rates. It appears to be more robust because local order statistics are unaffected by local sample differences due to monotonic shifts of texture gray values and are less sensitive to noise.

Harwood, D.↗

NASA NTRS1986

Relativistic effects in local inertial frames

The concept of a generalized Fermi frame is introduced with the aim of describing the relativistic effects due to a third, distant body (such as the sun) upon the motion of an earth satellite. This extends Fermi's construction of a local inertial frame to the case in which there are local gravitating masses. This is done in the slow-motion, weak-field approximation by splitting the metric into an external part and a local part; Fermi's construction of local inertial coordinates defined with respect to the external metric is then used to transform the complete metric. The results show that the main relativistic effects on an earth satellite are due to the nonlinear correction in the earth's own Schwarzschild field. There are much smaller relativistic corrections in the tidal field of the sun, and an earth-sun interaction term. The spatial axes of the local frame also undergo geodetic precession. Particular care must be taken with respect to the definition of the time coordinate in the generalized Fermi frame in order that the unit of time be consistent with readings of reasonable physical clocks on earth's surface. Also discussed more rigorously is the generalized Fermi frame for a system of two bodies revolving in circular orbits around a common barycenter.

Ashby, Neil↗

NASA NTRS1989

On computational schemes for global-local stress analysis

An overview is given of global-local stress analysis methods and associated difficulties and recommendations for future research. The phrase global-local analysis is understood to be an analysis in which some parts of the domain or structure are identified, for reasons of accurate determination of stresses and displacements or for more refined analysis than in the remaining parts. The parts of refined analysis are termed local and the remaining parts are called global. Typically local regions are small in size compared to global regions, while the computational effort can be larger in local regions than in global regions.

Reddy, J. N.↗

NASA NTRS1990

Study of local structure and magnetism in high-T(sub c) copper oxide superconductors

The muon spin rotation (MUSR) study of local magnetism of Sr-doped La2CuO4 is reviewed. Emphasis is placed on magnetic order as detected by local and bulk probes with local atomic environments studied by x ray absorption fine structure (XAFS). Correlations between the MUSR study of local magnetic ordering and the bulk magnetization study are presented along with a discussion of the dependence upon oxygen stoichiometry. Results are presented for both superconducting phases and magnetic phases. Recent data which reveals the existence of local magnetic ordering in the hydrogen-doped YBa2Cu3O7 system are also discussed.

Budnick, J. I.↗

NASA NTRS1990

Local gravitomagnetism

In a simple two-body system, the gravitomagnetic components of the metric in the local quasi-inertial frame of one of the bodies is calculated. The local geometry in this frame which is freely falling along the geodesic but is directionally fixed with respect to distant stars is primarily defined by the gravitomagnetic components of the local metric. This metric serves to track down the various contributions from the local and distant source and thus provides further insight to the nature of gravitomagnetism. As a result it is shown that in the quasi-inertial frame geodetic precession is a gravitomagnetic phenomenon. Furthermore a connection between local gravitomagnetic effects and Einstein's principle of equivalence is established.

Shahid-Saless, Bahman↗

NASA NTRS1994

Extensibility in local sensor based planning for hyper-redundant manipulators (robot snakes)

Partial Shape Modification (PSM) is a local sensor feedback method used for hyper-redundant robot manipulators, in which the redundancy is very large or infinite such as that of a robot snake. This aspect of redundancy enables local obstacle avoidance and end-effector placement in real time. Due to the large number of joints or actuators in a hyper-redundant manipulator, small displacement errors of such easily accumulate to large errors in the position of the tip relative to the base. The accuracy could be improved by a local sensor based planning method in which sensors are distributed along the length of the hyper-redundant robot. This paper extends the local sensor based planning strategy beyond the limitations of the fixed length of such a manipulator when its joint limits are met. This is achieved with an algorithm where the length of the deforming part of the robot is variable. Thus , the robot's local avoidance of obstacles is improved through the enhancement of its extensibility.

Choset, Howie↗

NASA NTRS1994

A new approach to the photon localization problem

Since wavelets form a representation of the Poincare group, it is possible to construct a localized superposition of light waves with different frequencies in a Lorentz-covariant manner. This localized wavelet satisfies a Lorentz-invariant uncertainty relation, and also the Lorentz-invariant Parseval's relation. A quantitative analysis is given for the difference between photons and localized waves. It is then shown that this localized entity corresponds to a relativistic photon with a sharply defined momentum in the non-localization limit. Waves are not particles. It is confirmed that the wave-particle duality is subject to the uncertainty principle.

Han, D.↗

NASA NTRS1994

The local distribution of Na I interstellar gas

We present high-resolution absorption measurements (lambda/Delta lambda approximately 75,000) of the interstellar Na I D lines at 5890 A toward 80 southern hemisphere early-type stars located in the local interstellar medium (LISM). Combining these results with other sodium measurements taken from the literature, we produce galactic maps of the distribution of neutral sodium column density for a total of 293 stars generally lying within approximately 250 pc of the Sun. These maps reveal the approximate shape of the mid-plane contours of the rarefied region of interstellar space termed the Local Bubble. Its shape is seen as highly asymmetric, with a radius ranging from 30 to 300 pc, and with an average radius of 60 pc. Similar plots of the Galactic mid-plane distribution of sources emitting extreme ultraviolet radiation show that they also trace out similar contours of the Local Bubble derived from Na I absorption measurements. We conclude that the Local Bubble absorption interface can be represented by a hydrogen column density, Nu(sub ETA) = 2 x 10(exp 19) cm(exp -2), which explains both the local distribution of Na I absorption and the observed galactic distribution of extreme ultraviolet sources. The derived mid-plane contours of the Bubble generally reproduce the large-scale features carved out in the interstellar medium by several nearby galactic shell structures.

Welsh, B. Y.↗

NASA NTRS1995

Deuterium and the Local Interstellar Medium: Properties for the Procyon and Capella Lines of Sight

We present Goddard High-Resolution Spectrograph observations of the interstellar H I and D I Ly-alpha lines and the Mg II and Fe II resonance lines formed along the lines of sight toward the nearby stars Procyon (3.5 pc, l = 214 deg, b = 13 deg) and Capella (12.5 pc, l = 163 deg, b = 5 deg). New observations of Capella were obtained at orbital phase 0.80, when the radial velocities of the intrinsic Ly-alpha emission lines of each star were nearly reversed from those of the previous observations at phase 0.26. Since the intrinsic Ly-alpha line of the Capella system (the 'continuum' against which the interstellar absorption is measured) has different shapes at phases 0.26 and 0.80, we can derive both the intrinsic stellar profiles and the interstellar absorption lines more precisely by jointly analyzing the two data sets. For the analysis of the Procyon line of sight, we first assumed that the intrinsic Ly-alpha line profile is a broadened solar profile, but this assumption does not lead to a good fit to the observed D I line profile for any value of D/H. We then assumed that (D/H)(sub LISM) = 1.6 x 10(exp -5), the same value as for the Capella line of sight, and we modified the broadened solar profile to achieve agreement between the simulated and observed line profiles. The resulting asymmetric intrinsic stellar line profile is consistent with the shapes of the scaled Mg II line profiles. We believe therefore that the Procyon data are consistent with (D/H)(sub LISM) = 1.6 x 10(exp -5), but the uncertainty in the intrinsic Ly-alpha emission-line profile does not permit us to conclude that the D/H ratio is constant in the local interstellar medium (LISM). The temperature and turbulence in the Procyon line of sight are T = 6900 +/- 80 (+/- 300 systematic error) K and zeta = 1.21 +/- 0.27 km/s. These properties are similar to those of Capella, except that the gas toward Procyon is divided into two velocity components separated by 2.6 km/s and the Procyon line of sight has a mean neutral hydrogen density that is a factor of 2.4 larger than that of the Capella line of sight. This suggests that the first 5.3 pc along the Capella line of sight lies within the local cloud and the remaining 7.2 pc lies in the hot gas surrounding the local cloud. We propose that n(H I) = 0.1065 +/- 0.0028 cm(exp -2) be adopted for the neutral hydrogen density within the local cloud and that zeta = 1.21 +/- 0.27 km/s be adopted for the nonthermal motions. The existence of different second velocity components toward the nearby stars Procyon and Sirius provides the first glimpse of a turbulent cloudlet boundary layer between the local cloud and the surrounding hot interstellar gas.

Linsky, Jeffrey L.↗

NASA NTRS2002

Abundances of Deuterium, Oxygen and Nitrogen in the Local Interstellar Medium: Overview of First Results from the Far Ultraviolet Spectroscopic Explorer Mission

Observations obtained with the Far Ultraviolet Spectroscopic Explorer (FUSE) have been used to determine the column densities of D I, O I, and N I along seven sight lines that probe the local interstellar medium (LISM) at distances from 37 pc to 179 pc. Five of the sight lines are within the Local Bubble and two penetrate the surrounding H I wall. Reliable values of N(H I) were determined for five of the sight lines from HST data, IUE data, and published EUVE measurements. The weighted mean of DI/H I for these five sight lines is (1.52 +/- 0.08) x l0(exp -5)(1 sigma uncertainty in the mean). It is likely that the D I/H I ratio in the Local Bubble has a single value. The D I/O I ratio for the five sight lines within the Local Bubble is (3.76 +/- 0.20) x 10(esp -2). It is likely that O I column densities can serve as a proxy for H I in the Local Bubble. The weighted mean for O I/ H I for the seven FUSE sight lines is (3.03 +/- 0.21) x 10(esp -4), comparable to the weighted mean (3.43 +/- 0.15) x 10(exp -4) reported for 13 sight lines probing larger distances and higher column densities. The FUSE weighted mean of N I/ H I for five sight lines is half that reported by Meyer et al. for seven sight lines with larger distances and higher column densities. This result combined with the variability of O I/ N I (six sight lines) indicates that at the low column densities found in the LISM, nitrogen ionization balance is important. Thus, unlike O I, N I cannot be used as a proxy for H I or as a metallicity indicator in the LISM.

Moos, H. W.↗

NASA NTRS1992

Identification of a nuclear localization sequence in the polyomavirus capsid protein VP2

A nuclear localization signal (NLS) has been identified in the C-terminal (Glu307-Glu-Asp-Gly-Pro-Gln-Lys-Lys-Lys-Arg-Arg-Leu318) amino acid sequence of the polyomavirus minor capsid protein VP2. The importance of this amino acid sequence for nuclear transport of newly synthesized VP2 was demonstrated by a genetic "subtractive" study using the constructs pSG5VP2 (expressing full-length VP2) and pSG5 delta 3VP2 (expressing truncated VP2, lacking amino acids Glu307-Leu318). These constructs were transfected into COS-7 cells, and the intracellular localization of the VP2 protein was determined by indirect immunofluorescence. These studies revealed that the full-length VP2 was localized in the nucleus, while the truncated VP2 protein was localized in the cytoplasm and not transported to the nucleus. A biochemical "additive" approach was also used to determine whether this sequence could target nonnuclear proteins to the nucleus. A synthetic peptide identical to VP2 amino acids Glu307-Leu318 was cross-linked to the nonnuclear proteins bovine serum albumin (BSA) or immunoglobulin G (IgG). The conjugates were then labeled with fluorescein isothiocyanate and microinjected into the cytoplasm of NIH 3T6 cells. Both conjugates localized in the nucleus of the microinjected cells, whereas unconjugated BSA and IgG remained in the cytoplasm. Taken together, these genetic subtractive and biochemical additive approaches have identified the C-terminal sequence of polyoma-virus VP2 (containing amino acids Glu307-Leu318) as the NLS of this protein.

Non-NASA Center↗

NASA NTRS2008

Interface Shape Control using Localized Heating during Bridgman Growth

Numerical calculations were performed to assess the effect of localized radial heating on the melt-crystal interface shape during vertical Bridgman growth. System parameters examined include the ampoule, melt and crystal thermal conductivities, the magnitude and width of localized heating, and the latent heat of crystallization. Concave interface shapes, typical of semiconductor systems, could be flattened or made convex with localized heating. Although localized heating caused shallower thermal gradients ahead of the interface, the magnitude of the localized heating required for convexity was less than that which resulted in a thermal inversion ahead ofthe interface. A convex interface shape was most readily achieved with ampoules of lower thermal conductivity. The conditions under which convection in the melt must be considered were determined.

Volz, M. P.↗