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DOE OSTI2025

CABO-16S—a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples

Abstract Identification of both prokaryotic and eukaryotic microorganisms in environmental samples is currently challenged by the need for additional sequencing to obtain separate 16S and 18S ribosomal RNA (rRNA) amplicons or the constraints imposed by “universal” primers. Organellar 16S rRNA sequences are amplified and sequenced along with prokaryote 16S rRNA and provide an alternative method to identify eukaryotic microorganisms. CABO-16S combines bacterial and archaeal sequences from the SILVA database with 16S rRNA sequences of plastids and other organelles from the PR2 database to enable identification of all 16S rRNA sequences. Comparison of CABO-16S with SILVA 138.2 results in equivalent taxonomic classification of mock communities and increased classification of diverse environmental samples. In particular, identification of phototrophic eukaryotes in shallow seagrass environments, marine waters, and lake waters was increased. The CABO-16S framework allows users to add custom sequences for further classification of underrepresented clades and can be easily updated with future releases of reference databases. Addition of sequences obtained from Sanger sequencing of methane seep sediments and curated sequences of the polyphyletic SEEP-SRB1 clade resulted in differentiation of syntrophic and non-syntrophic SEEP-SRB1 in hydrothermal vent sediments. CABO-16S highlights the benefit of combining and amending existing training sets when studying microorganisms in diverse environments.

Eitel, Eryn M. (ORCID:0009000723919297)↗

DOE OSTI2025

Mechanism of shape symmetry breaking in surfactant-mediated crystal growth

We present a dynamical model of crystal growth, in which it is possible to reliably achieve asymmetric products, beginning from symmetric initial conditions and growing within an isotropic environment. The asymmetric growth is the result of a positive feedback mechanism that amplifies the effect of thermal fluctuations in the coverage of surfactants on the growing crystalline facets. Within our simple model, we are able to understand the kinetic and thermodynamic factors involved in both the onset of symmetry breaking and the persistence of anisotropic growth. We demonstrate that the mechanism is general by studying models with increasing complexity. We argue that this mechanism of symmetry breaking underpins observations of colloidal, seed-mediated syntheses of single crystalline metal nanorods capped with strongly interacting surfactants. The parameters within our model are related to experimental observables such as the concentration, hydrophobicity, and binding strength of the surfactants, which suggests a potential route to optimize the yield of asymmetric products in colloidal nanoparticle syntheses.

Oaks-Leaf, Sam↗

DOE OSTI2025

Linear Quantum Coupler for Clean Bosonic Control

Quantum computing with superconducting circuits relies on high-fidelity driven nonlinear processes. An ideal quantum nonlinearity would selectively activate desired coherent processes at high strength, without activating parasitic mixing products or introducing additional decoherence. The wide bandwidth of the Josephson nonlinearity makes this difficult, with undesired drive-induced transitions and decoherence limiting qubit readout, gates, couplers, and amplifiers. Significant strides have recently been made into building better “quantum mixers,” with promise being shown by Kerr-free three-wave mixers that suppress driven frequency shifts, and balanced quantum mixers that explicitly forbid a significant fraction of parasitic processes. We propose a novel mixer that combines both these strengths, with engineered selection rules that make it essentially linear (not just Kerr-free) when idle, and activate clean parametric processes even when driven at high strength. Furthermore, its ideal Hamiltonian is simple to analyze analytically, and we show that this ideal behavior is first-order insensitive to dominant experimental imperfections. We expect this mixer to allow significant advances in high-𝑄 control, readout, and amplification.

Quantum circuits↗

DOE OSTI2025

Search for Axion Dark Matter from 1.1 to 1.3 GHz with ADMX

Axion dark matter can satisfy the conditions needed to account for all of the dark matter and solve the strong 𝐶⁢𝑃 problem. The Axion Dark Matter eXperiment (ADMX) is a direct dark matter search using a haloscope to convert axions to photons in an external magnetic field. Key to this conversion is the use of a microwave resonator that enhances the sensitivity at the frequency of interest. The ADMX experiment boosts its sensitivity using a dilution refrigerator and near quantum-limited amplifier to reduce the noise level in the experimental apparatus. In the most recent run, ADMX searched for axions between 1.10 and 1.31 GHz to extended Kim-Shifman-Vainshtein-Zakharov sensitivity. This Letter reports on the results of that run, as well as unique aspects of this experimental setup.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

DOE OSTI2026

Coherent anti-Stokes Raman scattering with squeezed light: CARS for quantum-enhanced spectroscopy and imaging

We theoretically investigate quantum-enhanced coherent anti-Stokes Raman scattering (CARS) using squeezed light to amplify vibrational transition rates at low photon flux. Quantum sensing approaches are needed for nondestructive nanometrology such as in bioimaging where reduced photodamage is desired while retaining resolution and sensitivity. We analyze both single-mode squeezing applied to the pump field and two-mode squeezing between the pump and Stokes fields. We also show that the ordering of displacement and squeezing operations—whether displacement precedes squeezing or squeezing precedes displacement—has an impact on the resulting CARS transition amplitudes due to a difference in the photon number and the quantum-enhancement coefficients, with the latter offering a stronger enhancement in the case of two modes squeezing of the pump and Stokes under experimentally accessible conditions. Furthermore, our calculations capture these quantum enhancements through the intrinsic photon-number correlations of squeezed light, eliminating the need for interferometric detection or higher pump powers that are otherwise required to reach comparable sensitivities in classical CARS. Finally, we outline a quantum plasmonic extension of our model in which local field enhancements caused by surface plasmon excitation in metallic nanoparticles can be incorporated via mode-selective field amplification factors, offering a pathway toward combining squeezed-light quantum optics with surface-enhanced nanoscale spectroscopy and imaging.

Atomic & molecular structure↗

DOE OSTI2025

Maximizing quantum enhancement in axion dark matter experiments

We provide a comprehensive comparison of linear amplifiers and microwave photon counters in axion dark matter experiments. The study is done assuming a range of realistic operating conditions and detector parameters, over the frequency range between 1 and 30 GHz. As expected, photon counters are found to be advantageous under low background, at high frequencies (𝜈 >5 GHz), if they can be implemented with robust wide-frequency tuning or a very low dark count rate. Additional noteworthy observations emerging from this study include: (1) an expanded applicability of off-resonance photon background reduction, including the single-quadrature state squeezing, for scan rate enhancements; (2) a much broader appeal for operating the haloscope resonators in the overcoupling regime, up to 𝛽 ∼10; (3) the need for a detailed investigation into the cryogenic and electromagnetic conditions inside haloscope cavities to lower the photon temperature for future experiments; (4) the necessity to develop a distributed network of coupling ports in high-volume axion haloscopes to utilize these potential gains in the scan rate.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

DOE OSTI2024

Quantum error mitigation by layerwise Richardson extrapolation

A widely used method for mitigating errors in noisy quantum computers is Richardson extrapolation, a technique in which the overall effect of noise on the estimation of quantum expectation values is captured by a single parameter that, after being scaled to larger values, is eventually extrapolated to the zero-noise limit. We generalize this approach by introducing layerwise Richardson extrapolation (LRE), an error mitigation protocol in which the noise of different individual layers (or larger chunks of the circuit) is amplified and the associated expectation values are linearly combined to estimate the zero-noise limit. The coefficients of the linear combination are analytically obtained from the theory of multivariate Lagrange interpolation. LRE leverages the flexible configurational space of layerwise unitary folding, allowing for a more nuanced mitigation of errors by treating the noise level of each layer of the quantum circuit as an independent variable. Furthermore, we provide numerical simulations demonstrating scenarios where LRE achieves superior performance compared to traditional (single-variable) Richardson extrapolation.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

DOE OSTI2025

Remote detection of radioactive material using a short-pulse CO 2 laser

Detection of radioactive material at distances greater than the radiated particle range is an important goal with applications in areas such as national defense and disaster response. Here, we demonstrate avalanche-breakdown-based remote detection of a 3.6 mCi α-particle source at a standoff distance of 10 m, using 70 ps, long-wave infrared (λ = 9.2 µm) CO 2 laser pulses. This is ∼10 times longer than our previous results using a mid-IR laser. The primary detection method is direct backscatter from microplasmas generated in the laser focal volume. The backscatter signal is amplified as it propagates back through the CO 2 laser chain, enhancing sensitivity by >100 times. Here we also characterize breakdown plasmas with fluorescence imaging, and present a simple model to estimate backscattered signals as a function of the seed density profile in the laser focal volume. All of this is achieved with a relatively long-drive laser focal geometry (f/200) that is readily scalable to >100 m.

43 PARTICLE ACCELERATORS↗

DOE OSTI2024

Characteristic terahertz emissions induced by optically excited collective orbital modes

Here, we study the generation of collective orbital modes, their evolution, and the characteristic nonlinear optical response induced by them in a photoinduced orbital-ordered correlated oxide using real-time simulations based on an interacting multiband tight-binding (TB) model. The d-d optical transitions under femtoseconds light-pulse in an orbital-ordered state excite collective orbital modes, also known as “orbitons”. Consistently incorporating electronic interactions and the interplay between charge, spin, and lattice degrees of freedom in the TB-model provides a clearer understanding of how these factors influence the generation and evolution of collective orbital modes. The dynamics of Jahn-Teller vibrational modes in the photoinduced state modify the intersite orbital interaction, which further amplifies these orbital modes. In the presence of weak ferroelectricity, the excitation of collective orbital modes induces a strong THz oscillatory photocurrent, which is long-lived. This suggests an alternative way to experimentally detect low-energy collective modes through THz-emission studies in the photoinduced state. Our study also elucidates that quasiparticle dynamics in improper ferroelectric oxides can be exploited to achieve highly interesting and nontrivial optoelectronic properties.

36 MATERIALS SCIENCE↗

DOE OSTI2024

Anomalous Hall crystals in rhombohedral multilayer graphene. II. General mechanism and a minimal model

Here we propose a minimal "three-patch model"for the anomalous Hall crystal (AHC), a topological electronic state that spontaneously breaks both time-reversal symmetry and continuous translation symmetry. The proposal for this state is inspired by the recently observed integer and fractional quantum Hall states in rhombohedral multilayer graphene at zero magnetic field. There, interaction effects appear to amplify the effects of a weak moiré potential, leading to the formation of stable, isolated Chern bands. It has been further shown that Chern bands are stabilized in mean-field calculations even without a moiré potential, enabling a realization of the AHC state. Our model is built on the dissection of the Brillouin zone into patches centered around high-symmetry points. Within this model, the wave functions at high-symmetry points fully determine the topology and energetics of the state. We extract two quantum geometrical phases of the noninteracting wave functions that control the stability of the topologically nontrivial AHC state. The model predicts that the AHC state wins over the topological trivial Wigner crystal in a wide range of parameters, and agrees very well with the results of full self-consistent Hartree-Fock calculations of the rhombohedral multilayer graphene Hamiltonian.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

DOE OSTI2025

200-fold increase in dynamic strength of platinum at 430 GPa without a phase transformation

Here, the high-pressure strength of solid platinum is studied at the National Ignition Facility via Rayleigh-Taylor ripple growth under ramp compression. Laser-driven experiments reached pressures up to 430 GPa, collecting velocimetry and radiography data. Despite no phase transformation, the observed ripple growth aligns with hydrodynamic simulations using an amplified Steinberg-Guinan model, resulting in a 200-fold increase in strength. Molecular dynamics simulations of platinum ramp compression yield similar von Mises stress at comparable high pressure and high strain rate conditions. These findings represent the highest-pressure strength measurements ever achieved for platinum and offer critical insight into its significant strengthening behavior under high pressure and strain rate conditions.

Righi, Gaia [Lawrence Livermore National Laborator↗

DOE OSTI2024

New limit on dark photon kinetic mixing in the 0.2 – 1.2 μ eV mass range from the Dark E-field Radio experiment

We report new limits on the kinetic mixing strength of the dark photon spanning the mass range 0.21 − 1.24 μ eV corresponding to a frequency span of 50–300 MHz. The Dark E-field Radio experiment is a wideband search for dark photon dark matter. In this paper we detail changes in calibration and upgrades since our proof-of-concept pilot run. Our detector employs a wide-bandwidth E-field antenna moved to multiple positions in a shielded room, a low noise amplifier, wideband analog-to-digital converter, followed by a 2 24 -point fast Fourier transform. An optimal filter searches for signals with Q ≈ 10 6 . In nine days of integration, this system is capable of detecting dark photon signals corresponding to a kinetic mixing strength ε several orders of magnitude lower than previous limits. We find a 95% exclusion limit on ε over this mass range between 6 × 10 − 15 and 6 × 10 − 13 , tracking the complex resonant mode structure in the shielded room. Published by the American Physical Society 2024

Astronomy & Astrophysics↗

DOE OSTI2024

Absorptive corrections to the electromagnetic form factor in high-energy elastic proton-proton scattering

Recently, it was noted that absorptive corrections to the electromagnetic form factor in high-energy proton-proton scattering are important for the theoretical interpretation of the p ↑ p and p ↑ A analyzing power A N ( t ) measurements with the Hydrogen Jet Target polarimeter (HJET) at RHIC. Here, a concise expression for the absorptive correction was derived within the eikonal approach. The resulting analysis reveals a systematic bias, nearly independent of the beam energy, in the experimental determination of the real-to-imaginary ratio ρ when absorption effects are overlooked in the data analysis. Quantification of this bias, as ρ meas = ρ + ( 0.036 ± 0.016 ) bias , was achieved using a Regge fit applied to available proton-proton measurements of ρ meas ( s ) and σ tot meas ( s ) . Considering the potential impact of such an effect on the experimentally determined A N ( t ) , one may enhance consistency between the HJET and STAR measurements of the hadronic spin-flip amplitude. While the sign of the bias in the value of ρ aligns with the anticipated effective increase in the proton charge radius in p p scattering due to absorption, it amplifies the observed discrepancy between σ tot meas and ρ meas values at s = 13 TeV as measured in the TOTEM experiment. Evaluation (using published TOTEM data) of the measured proton-proton d σ / d t dependence on the absorptive corrections indicated that possible soft photon corrections to the hadronic amplitude slope may be essential for such data analysis. Published by the American Physical Society 2024

43 PARTICLE ACCELERATORS↗

DOE OSTI2024

Magnetized neutral 2SC color superconductivity and possible origin of the inner magnetic field of magnetars

In this paper, the neutral 2SC phase of color superconductivity is investigated in the presence of a magnetic field and for diquark coupling constants and baryonic densities that are expected to characterize neutron stars. Specifically, the behavior of the charged gluons Meissner masses is investigated in the parameter region of interest, taking into account, in addition, the contribution of a rotated magnetic field. It is found that up to moderately high diquark coupling constants the mentioned Meissner masses become tachyonic independently of the applied magnetic-field amplitude, hence signalizing the chromomagnetic instability of this phase. To remove the instability, the restructuring of the system ground state is proposed, which now will be formed by vortices of the rotated charged gluons. These vortices boost the applied magnetic field, having the most significant increase for relatively low applied magnetic fields. Finally, considering that with the stellar rotational frequency observed for magnetars a field of the order of 10 8 G can be generated by dynamo effect, we show that by the boosting effect just described the field can be amplified to 10 17 G that is in the range of inner core fields expected for magnetars. Thus, we conclude that the described mechanism could be the one responsible for the large fields characterizing magnetars if the cores of these compact objects are formed by neutral 2SC matter. Published by the American Physical Society 2024

Yuan, Shuai↗

DOE OSTI2025

Daily modulations and broadband strategy in axion searches: An application with the CAST-CAPP detector

It has been previously advocated that the presence of the daily and annual modulations of the axion flux on the Earth’s surface may dramatically change the strategy of the axion searches. The arguments were based on the so-called Axion Quark Nugget (AQN) dark matter model which was originally put forward to explain the similarity of the dark and visible cosmological matter densities Ω dark ∼ Ω visible . In this framework, the population of galactic axions with mass 10 − 6 eV ≲ m a ≲ 10 − 3 eV and velocity ⟨ v a ⟩ ∼ 10 − 3 c will be accompanied by axions with typical velocities ⟨ v a ⟩ ∼ 0.6 c emitted by AQNs. Furthermore, in this framework, it has also been argued that the AQN-induced axion daily modulation (in contrast with the conventional weakly interactive massive particle paradigm) could be as large as (10–20)%, representing the main motivation for the present investigation. We argue that the daily modulations along with the broadband detection strategy can be very useful tools for the discovery of such relativistic axions. The data from the CAST-CAPP detector have been used following such arguments. Unfortunately, due to the dependence of the amplifier chain on temperature-dependent gain drifts and other factors, we could not conclusively show the presence or absence of a dark sector-originated daily modulation. However, this proof of principle analysis procedure can serve as a reference for future studies. Published by the American Physical Society 2025

Caspers, F.↗

DOE OSTI2025

Gravothermal collapse and the diversity of galactic rotation curves

The rotation curves of spiral galaxies exhibit a great diversity that challenges our understanding of galaxy formation and the nature of dark matter. Previous studies showed that in self-interacting dark matter (SIDM) models with a cross section per unit mass of σ/m ≈ $\mathscr{O}$(1) cm 2 /g, the predicted dark matter central densities are a good match to the observed densities in galaxies. Here, in this work, we explore a regime with a larger cross section of σ/m ≈ 20−40 cm 2 /g in dwarf galactic halos. We will show that such strong dark matter self-interactions can further amplify the diversity of halo densities inherited from their assembly history. High concentration halos can enter the gravothermal collapse phase within 10 Gyr, resulting in a high density, while low concentration ones remain in the expansion phase and have a low density. We fit the rotation curves of 14 representative low surface brightness galaxies and demonstrate how the large range of observed central densities is naturally accommodated in the strong SIDM regime of σ/m ≈ 20 – 40 cm 2 /g. Galaxies that are outliers in the previous studies, due to their high halo central densities, are no longer outliers in this SIDM regime as their halos would be in the collapse phase. For galaxies with a low density, the SIDM fits are robust to the variation of the cross section. Our findings open up a new window for testing gravothermal collapse, the unique signature of strong dark matter self-interactions, and exploring a broader SIDM model space. As an example, we illustrate how the larger cross sections favored by our fits, together with upper limits from strong lensing observations in clusters, pick out the preferred SIDM model space for a dark matter particle coupled to a light gauge boson in the Born regime.

dark matter↗

DOE OSTI2024

Hydrodynamic fluctuations near a Hopf bifurcation: Stochastic onset of vortex shedding behind a circular cylinder

Here, we investigate hydrodynamic fluctuations in the flow past a circular cylinder near the critical Reynolds number Re c for the onset of vortex shedding. Starting from the fluctuating Navier-Stokes equations, we perform a perturbation expansion around Re c to derive analytical expressions for the statistics of the fluctuating lift force. Molecular-level simulations using the direct simulation Monte Carlo method support the theoretical predictions of the lift power spectrum and amplitude distribution. Notably, we have been able to collect sufficient statistics at distances Re ⁡/ Re c – 1 = O ⁡(10 –3 ) from the instability that confirm the appearance of non-Gaussian fluctuations, and we observe that they are associated with intermittent vortex shedding. These results emphasize how unavoidable thermal-noise-induced fluctuations become dramatically amplified in the vicinity of oscillatory flow instabilities and that their onset is fundamentally stochastic.

42 ENGINEERING↗

DOE OSTI2024

Producing entangled photon pairs and quantum squeezed states in plasmas

Plasma is capable of mediating the conversion of two pump photons into two different photons through a relativistic four-wave mixing nonlinearity. Spontaneously created photon pairs are emitted at symmetric angles with respect to the colinear pump direction, and the emission rate is largest if they have identical frequency. Thus, two orthogonally polarized pumps can produce polarization-entangled photon pairs through a millimeter-long homogeneous plasma. Here, the noise from Raman scattering can be avoided if the pump detuning differs from twice the plasma frequency. However, pump detuning exactly equal to twice the plasma frequency can significantly enhance the interaction rate, which allows for the production of strong two-mode squeezed states. Remarkably, the amplified noise from Raman scattering are correlated and hence can be suppressed in one of the output quadratures, thereby maintaining the squeezing magnitude.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗