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Controls on Variations of Surface Energy, Water, and Carbon Budgets within Large-Scale Amazon Basin

A key research focus of the LBA Research Program is understanding the space-time variations in interlinked surface energy, water, and carbon budgets, the controls on these variations, and the implications of these controls on the carbon sequestering capacity of the large scale forest-pasture system that dominates the Amaz6nia landscape. Quantification of these variations and controls are investigated by a combination of in situ measurements, remotely sensed measurements from space, and a realistically forced hydrometeorological model coupled to a carbon assimilation model, capable of simulating details within the surface energy and water budgets along with the principle processes of photosynthesis and respiration. Herein we describe the results of an investigation concerning the space-time controls of carbon sources and sinks distributed over the large scale Amazon basin. The results are derived from a carbon-water-energy budget retrieval system for the large scale Amazon basin, which uses a coupled carbon assimilation-hydrometeorological model as an integrating system, forced by both in situ meteorological measurements and remotely sensed radiation and precipitation fluxes obtained from a combination of GOES, SSM/I, TOMS, and TRh4M satellite measurements. Results include validation of (a) retrieved surface radiation and precipitation fluxes based on 30-min averaged surface measurements taken at Ji-Parani in Rondania and Manaus in Amazonas, and (b) modeled sensible, latent, and C02 fluxes based on tower measurements taken at Reserva Jaru, Manaus and Fazenda Nossa Senhora. The space-time controls on carbon sequestration are partitioned into sets of factors classified by: (1) above canopy meteorology, (2) incoming surface radiation, (3) precipitation interception, and (4) indigenous stomatal processes varied over the different land covers of pristine rainforest, partially, and fully logged rainforests, and pasture lands. These are the principle meteorological, thermodynamical, hydrological, and biophysical control paths which perturb net carbon fluxes and sequestration, produce time-space switching of carbon sources and sinks, undergo modulation through atmospheric boundary layer feedbacks, and respond to any discontinuous intervention on the landscape itself such as produced by human intervention in converting rainforest to pasture or conducting selective/clearcut logging operations. The results demonstrate how relative carbon sequestration capacity of the Amazonian ecosystem responds to these controls, and how interpretation of space-time heterogeneities in carbon sequestration depends on a fairly exact quantification of the interacting non-linear properties of photosynthesis in response to incoming solar flux, air-canopy temperatures, and leaf water interception -- and soil respiration in response to upper layer soil temperature and water content. The results also show how the interpretation of the control processes is highly sensitive to the scales at which the surface fluxes are analyzed.

Smith, Eric A.↗

A Regional-Scale Assessment of Satellite Derived Precipitable Water Vapor Across The Amazon Basin

Atmospheric water vapor is widely recognized as a key climate variable, linking an assortment of poorly understood and complex processes. It is a major element of the hydrological cycle and provides a mechanism for energy exchange among many of the Earth system components. Reducing uncertainty in our current knowledge of water vapor and its role in the climate system requires accurate measurement, improved modeling techniques, and long-term prediction. Satellites have the potential to satisfy these criteria, as well as provide high resolution measurements that are not available from conventional sources. The focus of this paper is to examine the temporal and mesoscale variations of satellite derived precipitable water vapor (PW) across the Amazon Basin. This region is pivotal in the functioning of the global climate system through its abundant release of latent heat associated with heavy precipitation events. In addition, anthropogenic deforestation and biomass burning activities in recent decades are altering the conditions of the atmosphere, especially in the planetary boundary layer. A physical split-window (PSW) algorithm estimates PW using images from the GOES satellites along with the NCEP/NCAR Reanalysis data that provides the first guess information. Retrievals are made at a three-hourly time step during daylight hours in the Amazon Basin and surrounding areas for the months of June and October in 1988 (dry year) and 1995 (wet year). Spatially continuous fields are generated 5 times daily at 12Z, 15Z, 18Z, 21Z, and 00Z. These fields are then averaged to create monthly and 3 hourly monthly grids. Overall, the PSW estimates PW reasonable well in the Amazon with MAE ranging from 3.0 - 9.0 mm and MAE/observed mean around 20% in comparison to radiosonde observations. The distribution of PW generally mimics that of precipitation. Maximum values (42 - 52 mm) are located in the Northwest whereas minimum values (18 - 27 mm) are found along Brazil's East coast. Aside from the East coast, PW has a stronger north-south gradient than that of rainfall. As for the temporal variation of PW, June (1988 and 1995) experiences a peak about 1400 local time, corresponding to a maximum in air temperature. In contrast, October (1988 and 1995) experiences a maximum early in the day, 1100 local time, with a gradual decrease toward nighttime.

DeLiberty, Tracy↗

Aerosols from anthropogenic and biogenic sources and their interactions – modeling aerosol formation, optical properties, and impacts over the central Amazon basin

The Green Ocean Amazon experiment – GoAmazon 2014–2015 – explored the interactions between natural biogenic forest emissions from central Amazonia and urban air pollution from Manaus. Previous GoAmazon 2014–2015 studies showed that nitrogen oxide (NO x = NO + NO 2 ) and sulfur oxide (SO x ) emissions from Manaus strongly interact with biogenic volatile organic compounds (BVOCs), affecting secondary organic aerosol (SOA) formation. In previous studies, ground-based and aircraft measurements provided evidence of SOA formation and strong changes in aerosol composition and properties. Aerosol optical properties also evolve, and their impacts on the Amazonian ecosystem can be significant. As particles age, some processes, such as SOA production, black carbon (BC) deposition, particle growth and the BC lensing effect change the aerosol optical properties, affecting the solar radiation flux at the surface. This study analyzes data and models SOA formation using the Weather Research and Forecasting with Chemistry (WRF-Chem) model to assess the spatial variability in aerosol optical properties as the Manaus plumes interact with the natural atmosphere. The following aerosol optical properties are investigated: single scattering albedo (SSA), asymmetry parameter (g aer ), absorption Ångström exponent (AAE) and scattering Ångström exponent (SAE). These simulations were validated using ground-based measurements at three experimental sites, namely the Amazon Tall Tower Observatory – ATTO (T0a), downtown Manaus (T1), Tiwa Hotel (T2) and Manacapuru (T3), as well as the U.S. Department of Energy (DOE) Gulfstream 1 (G-1) aircraft flights. WRF-Chem simulations were performed over 7 d during March 2014. Results show a mean biogenic SOA (BSOA) mass enrichment of 512 % at the T1 site, 450 % in regions downwind of Manaus, such as the T3 site, and 850 % in areas north of the T3 site in simulations with anthropogenic emissions. The SOA formation is rather fast, with about 80 % of the SOA mass produced in 3–4 h. Comparing the plume from simulations with and without anthropogenic emissions, SSA shows a downwind reduction of approximately 10 %, 11 % and 6 % at the T1, T2 and T3 sites, respectively. Other regions, such as those further downwind of the T3 site, are also affected. The g aer values increased from 0.62 to 0.74 at the T1 site and from 0.67 to 0.72 at the T3 site when anthropogenic emissions are active. During the Manaus plume-aging process, a plume tracking analysis shows an increase in SSA from 0.91 close to Manaus to 0.98 160 km downwind of Manaus as a result of SOA production and BC deposition.

54 ENVIRONMENTAL SCIENCES↗

Regional aerosol chemistry of the Amazon Basin during the dry season

The distribution and chemical composition of the atmospheric aerosol over the Amazon Basin forest were determined during the 1985 July-August dry season, using data on the aerosol chemical constituent concentration collected during the NASA Global Tropospheric Experiment Amazon Boundary Layer Experiment 2A mission. The results of the analyses suggest that there is a remarkable compositional and spatial homogeneity of the atmospheric aerosol on an extensive regional scale. Particulate organic carbon is the dominant component of the atmospheric aerosol, exhibiting an average concentration of about 740 nmol/cu m in the mixed layer and about 220 nmol/cu m in free tropospheric air. Oxalate and SO4(2-) exhibited the greatest enrichment in the mixed layer, while Cl(-) showed essentially no enrichment. The aerosol in the Amazonian atmosphere is essentially acid-base neutral, primarily as a result of incorporation of NH(+), which is presumably derived from NH3 released by the forest ecosystem.

Talbot, R. W.↗

Interannual variability of solar irradiance over the Amazon Basin including the 1982-83 El Nino Year

Surface solar irradiance was derived over the extended Amazon Basin using AVHRR observations from polar-orbiting satellites during four July months (1983-1986). Observations from the geostationary satellite GOES for July 1983 were also used to assess diurnal effects. Both satellite datasets are part of the Satellite Cloud Climatology Project (ISCCP) B3 product. It was demonstrated that it is now possible to derive long-term surface solar irradiance, which can be useful in climate studies, and that the accuracy of the derived fields is sufficient to detect interannual differences that can exceed at times 70 W/sq m.

Pinker, Rachel T.↗

Leaf isoprene and monoterpene emission data-set across hyperdominant tree genera in the Amazon basin

This data package contains the analyzed data used to support the publication "Leaf isoprene and monoterpene emission distribution across hyperdominant tree genera in the Amazon basin," Phytochemistry, in-press. Data was collected from 162 trees across four sites in the Amazon. For all leaf samples studied for volatile isoprenoid emissions, branch cuttings were conducted in the upper canopy with sun exposed leaves with the assistance of a tree climber utilizing a pole pruner or directly accessed from flux towers. Large branches were removed from the upper canopy (up to 0.5-1.0 meter in length) and rapidly recut on the ground under water to maintain the transpiration stream. Net photosynthesis and isoprene and monoterpene emission rates were quantified from leaves during controlled changes in photosynthetically active radiation (PAR) using a commercial leaf photosynthesis system (LI-6400XT, LI-COR Inc., USA) interfaced with a gas chromatograph-mass spectrometer (GC-MS, 5975C series, Agilent Technologies, USA). For detailed methods and raw data, refer to the publication and related material cited in Dataset References.

54 ENVIRONMENTAL SCIENCES↗

Amazon Basin ozone and aerosol - Wet season observations

The ozone and aerosol number density data obtained from aircraft flights over the Amazon Basin (AB) during April and May of 1987 are summarized with particular attention given to the general characteristics of ozone and aerosol for wet season (WS), compared to dry season (DS), meteorology. It is concluded that the AB provides favorable conditions for the production of hydroxyl radical and subsequent chemical and photochemical reactions which generate or consume key atmospheric trace species. It is determined that a negative ozone gradient exists within the mixed layer (ML). WSML ozone is about 7 ppbv lower than that of DS. The net sink characteristics of the WSML are seen throughout the troposphere of the AB in that the ozone at 3-4 km altitude is typically 15-25 ppbv as compared to DS values of 30-35 ppbv. In terms of aerosol source characteristics of the AB, ML aerosols are 5-10 times higher than observed in the troposphere with ML values of 100-200 aerosols/cu cm. An analysis of aerosol size distribution data is presented.

Gregory, Gerald L.↗

Low-level nocturnal wind maximum over the Central Amazon Basin

A low-level nocturnal wind maximum is shown to exist over extensive and nearly undisturbed rainforest near the central Amazon city of Manaus. Meteorological data indicate the presence of this nocturnal wind maximum during both the wet and dry seasons of the Central Amazon Basin. Daytime wind speeds which are characteristically 3-7 m/s between 300 and 1000 m increase to 10-15 m/s shortly after sunset. The wind-speed maximum is reached in the early evening, with wind speeds remaining high until several hours after sunrise. The nocturnal wind maximum is closely linked to a strong low-level inversion formed by radiational cooling of the rainforest canopy. Surface and low-level pressure gradients between the undisturbed forest and the large Amazon river system and the city of Manaus are shown to be responsible for much of the nocturnal wind increase. The pressure gradients are interpreted as a function of the thermal differences between undisturbed forest and the river/city. The importance of both the frictional decoupling and the horizontal pressure gradient suggest that the nocturnal wind maximum does not occur uniformly over all Amazonia. Low-level winds are thought to be pervasive under clear skies and strong surface cooling and that, in many places (i.e., near rivers), local pressure gradients enhance the low-level nocturnal winds.

Greco, Steven↗

Raw leaf gas exchange data in the Amazon basin, 2014-2016

This data package contains raw leaf gas exchange data used to support the publication "Leaf isoprene and monoterpene emission distribution across hyperdominant tree genera in the Amazon basin," Phytochemistry, in-press. Data was collected from 162 individuals, distributed among 25 botanical families and 113 species, from four sites in the Amazon. The data was collected using a modified portable photosynthesis system for environmental control coupled to a thermal desorption tube for volatile isoprenoid collections. Collected TD tube samples were analysed in Manaus, Brazil, using thermal desorption-gas chromatography-mass spectrometry (TD-GC-MS). The dataset includes both photosynthesis and isoprene/monoterpene emission rates from leaves under standard environmental conditions as well as controlled light response curves. For detailed methods and raw data, refer to the publication and related material cited in Dataset References.

54 ENVIRONMENTAL SCIENCES↗

A Behavioral Model of Landscape Change in the Amazon Basin: The Colonist Case

This paper presents the prototype of a predictive model capable of describing both magnitudes of deforestation and its spatial articulation into patterns of forest fragmentation. In a departure from other landscape models, it establishes an explicit behavioral foundation for algorithm development, predicated on notions of the peasant economy and on household production theory. It takes a 'bottom-up' approach, generating the process of land-cover change occurring at lot level together with the geography of a transportation system to describe regional landscape change. In other words, it translates the decentralized decisions of individual households into a collective, spatial impact. In so doing, the model unites the richness of survey research on farm households with the analytical rigor of spatial analysis enabled by geographic information systems (GIs). The paper describes earlier efforts at spatial modeling, provides a critique of the so-called spatially explicit model, and elaborates a behavioral foundation by considering farm practices of colonists in the Amazon basin. It then uses, insight from the behavioral statement to motivate a GIs-based model architecture. The model is implemented for a long-standing colonization frontier in the eastern sector of the basin, along the Trans-Amazon Highway in the State of Para, Brazil. Results are subjected to both sensitivity analysis and error assessment, and suggestions are made about how the model could be improved.

Walker, R. A.↗

Water Balance in the Amazon Basin from a Land Surface Model Ensemble

Despite recent advances in land surfacemodeling and remote sensing, estimates of the global water budget are still fairly uncertain. This study aims to evaluate the water budget of the Amazon basin based on several state-ofthe- art land surface model (LSM) outputs. Water budget variables (terrestrial water storage TWS, evapotranspiration ET, surface runoff R, and base flow B) are evaluated at the basin scale using both remote sensing and in situ data. Meteorological forcings at a 3-hourly time step and 18 spatial resolution were used to run 14 LSMs. Precipitation datasets that have been rescaled to matchmonthly Global Precipitation Climatology Project (GPCP) andGlobal Precipitation Climatology Centre (GPCC) datasets and the daily Hydrologie du Bassin de l'Amazone (HYBAM) dataset were used to perform three experiments. The Hydrological Modeling and Analysis Platform (HyMAP) river routing scheme was forced with R and B and simulated discharges are compared against observations at 165 gauges. Simulated ET and TWS are compared against FLUXNET and MOD16A2 evapotranspiration datasets andGravity Recovery and ClimateExperiment (GRACE)TWSestimates in two subcatchments of main tributaries (Madeira and Negro Rivers).At the basin scale, simulated ET ranges from 2.39 to 3.26 mm day(exp -1) and a low spatial correlation between ET and precipitation indicates that evapotranspiration does not depend on water availability over most of the basin. Results also show that other simulated water budget components vary significantly as a function of both the LSM and precipitation dataset, but simulated TWS generally agrees with GRACE estimates at the basin scale. The best water budget simulations resulted from experiments using HYBAM, mostly explained by a denser rainfall gauge network and the rescaling at a finer temporal scale.

GPCP↗

Evaluation of PBL Parameterization Schemes in WRF Model Predictions during the Dry Season of the Central Amazon Basin

Planetary Boundary Layer (PBL) parameterization schemes are employed to handle subgrid-scale processes on atmospheric models, playing a key role in accurately representing the atmosphere. Recent studies have shown that PBL schemes are particularly fundamental to the depiction of PBL height (PBLH), especially over the Amazon. In the present study, we investigated the performance of PBL schemes on the representation of meteorological variables, turbulent fluxes, PBL vertical structures, and PBLH over the central Amazon basin under dry conditions, taking advantage of observations from the Observations and Modeling of the Green Ocean Amazon campaign (GoAmazon2014/5) for validation and evaluation. Numerical experiments were carried out within the WRF model using eight PBL schemes for two dry periods from 2014 (typical year) and 2015 (El-Niño year), and results from the 1-km resolution domain were directly compared to hourly in situ observations. In general, all PBL schemes present good performance to reproduce meteorological variables, with nonlocal (local) PBL schemes producing better performance in the 2014 (2015) study period. All PBL schemes in general overestimate (>100%) daytime turbulent fluxes. Thermodynamic (daytime) vertical structures are better predicted than mechanical (nocturnal) ones. The local MYNN2.5 scheme showed the overall best performance for PBLH prediction, mainly at night.

54 ENVIRONMENTAL SCIENCES↗

Sensitivity of Regional Climate to Deforestation in the Amazon Basin

The deforestation results in several adverse effect on the natural environment. The focus of this paper is on the effects of deforestation on land-surface processes and regional climate of the Amazon basin. In general, the effect of deforestation on climate are likely to depend on the scale of the defrosted area. In this study, we are interested in the effects due to deforestation of areas with a scale of about 250 km. Hence, a meso-scale climate model is used in performing numerical experiments on the sensitivity of regional climate to deforestation of areas with that size. It is found that deforestation results in less net surface radiation, less evaporation, less rainfall, and warmer surface temperature. The magnitude of the of the change in temperature is of the order 0.5 C, the magnitudes of the changes in the other variables are of the order of IO%. In order to verify some of he results of the numerical experiments, the model simulations of net surface radiation are compared to recent observations of net radiation over cleared and undisturbed forest in the Amazon. The results of the model and the observations agree in the following conclusion: the difference in net surface radiation between cleared and undisturbed forest is, almost, equally partioned between net solar radiation and net long-wave radiation. This finding contributes to our understanding of the basic physics in the deforestation problem.

Eltahir, Elfatih A. B.↗

Increased Occurrence of Large–Scale Windthrows Across the Amazon Basin

Convective storms with strong downdrafts create windthrows: snapped and uprooted trees that locally alter the structure, composition, and carbon balance of forests. Comparing Landsat imagery from subsequent years, we documented temporal and spatial variation in the occurrence of large (≥30 ha) windthrows across the Amazon basin from 1985 to 2020. Over 33 individual years, we detected 3179 large windthrows. Windthrow density was greatest in the central and western Amazon regions, with ~33% of all events occurring in ~3% of the monitored area. Return intervals for large windthrows in the same location of these “hotspot” regions are centuries to millennia, while over the rest of the Amazon they are >10,000 years. Our data demonstrate a nearly 4–fold increase in windthrow number and affected area between 1985 (78 windthrows and 6,900 ha) and 2020 (264 events and 32,170 ha), with more events of >500 ha size since 1990. Such extremely large events (>500 ha up to 2,543 ha) are responsible for interannual variation in the overall median (84 ± 5.2 ha; ±95% CI) and mean (147 ± 13 ha) windthrow area, but we did not find significant temporal trends in the size distribution of windthrows with time. Our results document increased damage from convective storms over the past 40 years in the Amazon, filling a gap in temporal records for tropical regions. Our publicly accessible large windthrow database provides a valuable tool for exploring dynamic conditions leading to damaging storms and their ecological impact on Amazon forests.

54 ENVIRONMENTAL SCIENCES↗

Optical imaging of cloud-to-stratosphere/mesosphere lightning over the Amazon Basin (CS/LAB)

The purpose of the CS/LAB project was to obtain images of cloud to stratosphere lightning discharges from aboard NASA's DC-8 Airborne Laboratory while flying in the vicinity of thunderstorms over the Amazon Basin. We devised a low light level imaging package as an add-on experiment to an airborne Laboratory deployment to South America during May-June, 1993. We were not successful in obtaining the desired images during the South American deployment. However, in a follow up flight over the American Midwest during the night of July 8-9, 1993 we recorded nineteen examples of the events over intense thunderstorms. From the observations were estimated absolute brightness, terminal altitudes, flash duration, horizontal extents, emission volumes, and frequencies relative to negative and positive ground strokes.

Sentman, Davis D.↗

A Brief Assessment of the Impact of Nearly 40 Years of Assimilated Observations Over the Amazon Basin

Adding a Forecast Sensitivity-based Observation Impact component to Version 2 of the Modern Era Retrospective-analysis for Research and Applications, the present study provides an assessment of the impact of nearly 40 years of observations on short-range (24-hr) forecasts over the Amazon basin. Under self-verification, forecast errors are found to slightly increase from the early data-sparse days to the more recent years, when data dramatically increase. Throughout the reanalysis, satellite radiances dominate in volume, but only before 1999 they dominate the impacts. Beyond 1999, over 50% of forecast error reduction is associated with conventional observations (radiosondes). Atmospheric Motion Vectors are also found to be large contributors to error reduction, but their contribution reduces in dry periods. In opposition to Atmospheric Motion Vectors, satellite radiances tend to contribute more in the dry season. Results provide motivation for additional conventional observations and the use of all-sky treatment of radiances.

F. L. R. Diniz↗

Trace gas and aerosol transports into and out of the Amazon Basin

Research under Agreement NCC1-106 during the interim period Oct. 1, 1991 to May 31, 1992 has continued to use the data collected during all three ABLE missions. The work reported on in this interim period includes published papers that cover the topic of global interactions between the rain forest of the Amazon Basin and local regional processes interior to the Basin itself.

Garstang, Michael↗

Ozone and aerosol distributions over the Amazon Basin during the wet season

Results are presented of O3 and aerosol measurements made in the lower troposphere from April 13 through May 10, 1987, as part of the wet season field experiment. Aircraft flights on the NASA Electra were conducted in the vicinity of Manaus, Brazil and between Manaus and the mouth of the Amazon River. Airborne O3 measurements were made in situ and with a lidar system pointed below the aircraft in nadir mode of operation. Data collection and results concerning the distributions of O3 and aerosols observed during the wet season from within the mixed layer to the middle troposphere over the central Amazon basin and between Manaus and Belem are discussed, and these observations are compared to the measurements obtained in the 1985 dry season. Ozone mixing ratio values are found to be lower than those of the 1985 dry season by 6-8 ppbv, indicating a strong removal process near the surface during wet season. It is also found that within the mixed layer O3 levels appeared to be lower over the forest compared to over the ocean.

Browell, Edward V.↗