Computer methods of network analysis
Computer influence on methods of formulating network problems for designing electronic equipment
NETWORK ANALYSIS↗
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Management of the Space Physics Analysis Network (SPAN)
Here, the purpose is to define the operational management structure and to delineate the responsibilities of key Space Physics Analysis Network (SPAN) individuals. The management structure must take into account the large NASA and ESA science research community by giving them a major voice in the operation of the system. Appropriate NASA and ESA interfaces must be provided so that there will be adequate communications facilities available when needed. Responsibilities are delineated for the Advisory Committee, the Steering Committee, the Project Scientist, the Project Manager, the SPAN Security Manager, the Internetwork Manager, the Network Operations Manager, the Remote Site Manager, and others.
Green, James L.↗
Network analysis of memristive device circuits: dynamics, stability and correlations
Abstract Networks with memristive devices are a potential basis for the next generation of computing devices. They are also an important model system for basic science, from modeling nanoscale conductivity to providing insight into the information-processing of neurons. The resistance in a memristive device depends on the history of the applied bias and thus displays a type of memory. The interplay of this memory with the dynamic properties of the network can give rise to new behavior, offering many fascinating theoretical challenges. But methods to analyze general memristive circuits are not well described in the literature. In this paper we develop a general circuit analysis for networks that combine memristive devices alongside resistors, capacitors and inductors and under various types of control. We derive equations of motion for the memory parameters of these circuits and describe the conditions for which a network should display properties characteristic of a resonator system. For the case of a purely memresistive network, we derive Lyapunov functions, which can be used to study the stability of the network dynamics. Surprisingly, analysis of the Lyapunov functions show that these circuits do not always have a stable equilibrium in the case of nonlinear resistance and window functions. The Lyapunov function allows us to study circuit invariances, wherein different circuits give rise to similar equations of motion, which manifest through a gauge freedom and node permutations. Finally, we identify the relation between the graph Laplacian and the operators governing the dynamics of memristor networks operators, and we use these tools to study the correlations between distant memristive devices through the effective resistance.
97 MATHEMATICS AND COMPUTING↗
Phobos - Control network analysis
Initial analysis of the Mariner 9 high resolution pictures of Phobos surface features has been completed. A control network of 38 landmarks has been established and used to determine the physical size, shape, orientation, libration, and topography properties of Phobos. The results verified the synchronous rotation of Phobos and revealed a libration of approximately 5 deg in the orbit plane of Phobos. A preliminary map of Phobos, based on the control network analysis, is given.
Duxbury, T. C.↗
Stream network analysis from orbital and suborbital imagery, Colorado River Basin, Texas
The author has identified the following significant results. Orbital SL-2 imagery (earth terrain camera S-190B), received September 5, 1973, was subjected to quantitative network analysis and compared to 7.5 minute topographic mapping (scale: 1/24,000) and U.S.D.A. conventional black and white aerial photography (scale: 1/22,200). Results can only be considered suggestive because detail on the SL-2 imagery was badly obscured by heavy cloud cover. The upper Bee Creek basin was chosen for analysis because it appeared in a relatively cloud-free portion of the orbital imagery. Drainage maps were drawn from the three sources digitized into a computer-compatible format, and analyzed by the WATER system computer program. Even at its small scale (1/172,000) and with bad haze the orbital photo showed much drainage detail. The contour-like character of the Glen Rose Formation's resistant limestone units allowed channel definition. The errors in pattern recognition can be attributed to local areas of dense vegetation and to other areas of very high albedo caused by surficial exposure of caliche. The latter effect caused particular difficulty in the determination of drainage divides.
Baker, V. R.↗
Spatiotemporal Filtering Using Principal Component Analysis and Karhunen-Loeve Expansion Approaches for Regional GPS Network Analysis
Spatial filtering is an effective way to improve the precision of coordinate time series for regional GPS networks by reducing so-called common mode errors, thereby providing better resolution for detecting weak or transient deformation signals. The commonly used approach to regional filtering assumes that the common mode error is spatially uniform, which is a good approximation for networks of hundreds of kilometers extent, but breaks down as the spatial extent increases. A more rigorous approach should remove the assumption of spatially uniform distribution and let the data themselves reveal the spatial distribution of the common mode error. The principal component analysis (PCA) and the Karhunen-Loeve expansion (KLE) both decompose network time series into a set of temporally varying modes and their spatial responses. Therefore they provide a mathematical framework to perform spatiotemporal filtering.We apply the combination of PCA and KLE to daily station coordinate time series of the Southern California Integrated GPS Network (SCIGN) for the period 2000 to 2004. We demonstrate that spatially and temporally correlated common mode errors are the dominant error source in daily GPS solutions. The spatial characteristics of the common mode errors are close to uniform for all east, north, and vertical components, which implies a very long wavelength source for the common mode errors, compared to the spatial extent of the GPS network in southern California. Furthermore, the common mode errors exhibit temporally nonrandom patterns.
displacement↗
Compilation and utilization of a sorghum transcriptome compendium for gene regulatory network analysis and crop trait engineering
Sorghum bicolor (Sorghum) is a drought and heat tolerant C4 grass crop used to produce grain, forage, biofuels, and other bioproducts. Genetic improvement of sorghum hybrid crops is aided by a large and diverse germplasm, sorghum's diploid inbreeding genetics, and a relatively small genome that has facilitated genomic research. Over the past 20 years, the sorghum research community characterized the cytogenetic and recombinant landscapes of sorghum's 10 chromosomes, sequenced and annotated the sorghum genome, and used that information to identify genes/alleles that modulate flowering time, plant height, seed shattering, and other important traits. More recently, >1000 RNA-seq transcriptome profiles were collected from 15 sorghum genotypes to help understand the genetic basis of variation in growth and development of sorghum stems, tillers, roots, and leaves, and the regulation of biosynthetic pathways that produce epicuticular wax, dhurrin, and RFOs, compounds that contribute to sorghum's resilience. Transcriptome studies were designed to identify differentially expressed genes that are co-expressed during development or in response to a treatment to enable construction of gene regulatory networks. Co-expression and network analysis identified transcription factors and their cognate binding sites in target gene promoters and signaling pathways that modulate gene regulatory networks providing gene editing targets for further trait optimization. RNA-seq data from >20 experiments targeting sorghum organs, tissues, cell types, developmental stages, and responses to environmental conditions (i.e., diel, day-length, shading, water-deficit, temperature) has been compiled in a sorghum transcriptome compendium. The goal of this resource paper is to describe compendium content, accessibility, and a compendium data analysis pipeline and to illustrate the types of information that can be derived from the compendium with a focus on the elucidation of gene regulatory networks useful for guiding the improvement of sorghum traits through gene editing.
RNA-seq↗
A multilayer network analysis of Alzheimer's disease pathogenesis: Roles for p‐tau, synaptic peptides, and physical activity
INTRODUCTION: In the aging brain, cognitive abilities emerge from the coordination of complex pathways arising from a balance between protective lifestyle and environmental factors and accumulation of neuropathologies. METHODS: As part of the Rush Memory and Aging Project (n = 440), we measured accelerometer-based actigraphy, cognitive performance, and after brain autopsy, selected reaction monitoring mass spectrometry. Multilevel network analysis was used to examine the relationships among the molecular machinery of vesicular neurotransmission, Alzheimer's disease (AD) neuropathology, cognition, and late-life physical activity. RESULTS: Synaptic peptides involved in neuronal secretory function were the most influential contributors to the multilayer network, reflecting the complex interdependencies among AD pathology, synaptic processes, and late-life cognition. Older adults with lower physical activity evidenced stronger adverse relationships among phosphorylated tau peptides, markers of synaptic integrity, and tangle pathology. DISCUSSION: Network-based approaches simultaneously model interdependent biological processes and advance understanding of the role of physical activity in age-associated cognitive impairment. Highlights: Network-based approaches simultaneously model interdependent biological processes. Secretory synaptic peptides were influential contributors to the multilayer network. Older adults with lower physical activity had adverse relationships among pathology. There was interdependence among phosphorylated tau, synaptic integrity, and tangles. Network methods elucidate the role of physical activity in cognitive impairment.
60 APPLIED LIFE SCIENCES↗
GERT simulation program for GERT network analysis
GERT Simulation Program simulates GERT networks to obtain statistics on specified nodes of the network. It performs sampling experiments to determine which branches of the network are taken and how long it takes to traverse a branch of the network.
Alan, A.↗
Mercury network analysis for MA-8
Overall performance of Mercury network during Mercury Atlas /MA-8/ mission
PERFORMANCE CHARACTERISTICS↗
S-band Network Analysis and Strategies for LEO Multi-CubeSat Science Missions
This paper presents the network architecture utilized at NASA’s Goddard Space Flight Center (GSFC) to support a mission set of five 6U CubeSats. These five CubeSats employ a multi-waveform Software Defined Radio (SDR) platform developed by Vulcan Wireless for use with NASA’s Space Relay (SR) and Direct to Earth (DTE) networks. The performance testing of the SDR is discussed via a comprehensive S-band and communication link analysis. The tested capabilities of the SDR and antenna components are reviewed in terms of the mission requirements for each CubeSat. Size Weight and Power (SWaP), required availability, and access times are discussed. The measured data from experimental compatibility testing is incorporated into detailed simulations of the CubeSat mission set to verify desired performance over the mission lifetime. The model is also used to investigate the impact of potential adverse effects on the communication links such as interference and weather conditions. This paper also reviews potential improvements from future technological advances and commercial partnerships. A collaborative investigation between GSFC and Oklahoma State University is presented in which a qualitative analysis of Hybrid RF/Optical communication strategies is performed. The data rate improvements of optical communication techniques are weighed against attitude control and science mission requirements for CubeSats, and network architectures/switching strategies are discussed. A separate analysis reviews the potential benefits of ground station partnerships, which aligns with NASA’s future goal to include commercial partners in its Earth and space network architectures, e.g. LunaNet.
Space networks↗
Exploring Carbon Mineral Systems: Recent Advances in C Mineral Evolution, Mineral Ecology, and Network Analysis
Large and growing data resources on the spatial and temporal diversity and distribution of the more than 400 carbon-bearing mineral species reveal patterns of mineral evolution and ecology. Recent advances in analytical and visualization techniques leverage these data and are propelling mineralogy from a largely descriptive field into one of prediction within complex, integrated, multidimensional systems. These discoveries include: (1) systematic changes in the character of carbon minerals and their networks of coexisting species through deep time; (2) improved statistical predictions of the number and types of carbon minerals that occur on Earth but are yet to be discovered and described; and (3) a range of proposed and ongoing studies related to the quantification of network structures and trends, relation of mineral “natural kinds” to their genetic environments, prediction of the location of mineral species across the globe, examination of the tectonic drivers of mineralization through deep time, quantification of preservational and sampling bias in the mineralogical record, and characterization of feedback relationships between minerals and geochemical environments with microbial populations. These aspects of Earth’s carbon mineralogy underscore the complex coevolution of the geosphere and biosphere and highlight the possibility for scientific discovery in Earth and planetary systems.
Carbon↗
Advanced Solid Rocket Motor (ASRM) communications network analysis
This paper describes the simulation of a proposed campus-wide network for a new manufacturing facility. The proposed network consists of five carrier sense multiple access with collision detection (CSMA/CD) networks connected to five ports of a VAX cluster. In Section 1 the system configuration, the projected traffic pattern, and the proposed protocols are presented. Section 2 describes the models used in constructing the network simulation, while Section 3 contains the results and an analysis of the simulations. The simulations are compared to a mathematical model in Section 4. Some conclusions are drawn in Section 5.
Thompson, Dale R.↗
Signal flow graphs as an aid in network analysis
Signal flow graph, obtaining numeric and symbolic expressions for network function in terms of component parameters and sensitivity coefficients
Zobrist, G. W.↗
Switched-beam radiometer front-end network analysis
The noise figure performance of various delay-line networks fabricated from microstrip lines with varying number of elements was investigated using a computer simulation. The effects of resistive losses in both the transmission lines and power combiners were considered. In general, it is found that an optimum number of elements exists, depending upon the resistive losses present in the network. Small resistive losses are found to have a significant degrading effect upon the noise figure performance of the array. Extreme stability in switching characteristics is necessary to minimize the nondeterministic noise of the array. For example, it is found that a 6 percent tolerance on the delay-line lengths will produce a 0.2 db uncertainty in the noise figure which translates into a 13.67 K temperature uncertainty generated by the network. If the tolerance can be held to 2 percent, the uncertainty in noise figure and noise temperature will be 0.025 db and 1.67 K, respectively. Three phase shift networks fabricated using a commercially available PIN diode switch were investigated. Loaded-line phase shifters are found to have desirable RF and noise characteristics and are attractive components for use in phased-array networks.
Trew, R. J.↗
Striped Mullet Migration Patterns in the Indian River Lagoon: A Network Analysis Approach to Spatial Fisheries Management
Striped mullet (Mugil cephalus) are numerically abundant forage fish, highly valuable as prey and commercially valuable to humans. From September to December, mullet in the Indian River Lagoon (IRL), Florida undergo an annual migration from inshore foraging habitats to oceanic spawning sites. However, their migratory pathways, in particular their intra-estuarine movement pathways, remain unknown. To address this knowledge gap, we utilized passive acoustic telemetry to assess the movement patterns of M. cephalus within the IRL. Thirty-two fish were tagged, generating usable tracks from 18 individuals. The mean (±s.d.) time that fish were detected in the array was ~38 ± 90 days, with the longest at 444 days. We also document the first evidence of skipped spawning in M. cephalus inhabiting waters of the southeastern United States. These data suggest impoundments around the Merritt Island National Wildlife Refuge appear to serve as important refugia for striped mullet while the Banana and Indian Rivers act as corridors during their inshore migratory movements. Through spatial fisheries management, high value habitat and connective elements utilized by mullet and other vital forage fish may be identified, to benefit both natural and human dynamics in estuarine systems.
Acoustic telemetry↗
Computer program for compressible flow network analysis
Program solves problem of an arbitrarily connected one dimensional compressible flow network with pumping in the channels and momentum balancing at flow junctions. Program includes pressure drop calculations for impingement flow and flow through pin fin arrangements, as currently found in many air cooled turbine bucket and vane cooling configurations.
Wilton, M. E.↗
Generalized Fluid System Simulation Program (GFSSP) Version 6 - General Purpose Thermo-Fluid Network Analysis Software
GFSSP stands for Generalized Fluid System Simulation Program. It is a general-purpose computer program to compute pressure, temperature and flow distribution in a flow network. GFSSP calculates pressure, temperature, and concentrations at nodes and calculates flow rates through branches. It was primarily developed to analyze Internal Flow Analysis of a Turbopump Transient Flow Analysis of a Propulsion System. GFSSP development started in 1994 with an objective to provide a generalized and easy to use flow analysis tool for thermo-fluid systems.
Majumdar, Alok↗