Search NASA⌕ Search

SEARCH · Search NASA

Results for “perturbation”

Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 379 records · Page 21
All sourcesNASA NTRSDOE OSTI
DOE OSTI2020

Gyrokinetic understanding of the edge pedestal transport driven by resonant magnetic perturbations in a realistic divertor geometry

Self-consistent simulations of neoclassical and electrostatic turbulent transport in a DIII-D H-mode edge plasma under resonant magnetic perturbations (RMPs) have been performed using the global total-f gyrokinetic particle-in-cell code XGC, in order to study density-pump out and electron heat confinement.The RMP field is imported from the extended magneto-hydrodynamics (MHD) code M3D-C1, taking into account the linear two-fluid plasma response.With both neoclassical and turbulence physics considered together, the XGC simulation reproduces two key features of experimentally observed edge transport under RMPs: increased radial particle transport in the pedestal region that is sufficient to account for the experimental pump-out rate, and suppression of the electron heat flux in the steepest part of the edge pedestal.In the simulation, the density fluctuation amplitude of modes moving in the electron diamagnetic direction increases due to interaction with RMPs in the pedestal shoulder and outward, while the electron temperature fluctuation amplitude decreases.

DIII-D↗
DOE OSTI2020

Structural analyses of the PKA RIIβ holoenzyme containing the oncogenic DnaJB1-PKAc fusion protein reveal protomer asymmetry and fusion-induced allosteric perturbations in fibrolamellar hepatocellular carcinoma

When the J-domain of the heat shock protein DnaJB1 is fused to the catalytic (C) subunit of cAMP-dependent protein kinase (PKA), replacing exon 1, this fusion protein, J-C subunit (J-C), becomes the driver of fibrolamellar hepatocellular carcinoma (FL-HCC). Here, we use cryo-electron microscopy (cryo-EM) to characterize J-C bound to RIIβ, the major PKA regulatory (R) subunit in liver, thus reporting the first cryo-EM structure of any PKA holoenzyme. We report several differences in both structure and dynamics that could not be captured by the conventional crystallography approaches used to obtain prior structures. Most striking is the asymmetry caused by the absence of the second cyclic nucleotide binding (CNB) domain and the J-domain in one of the RIIβ:J-C protomers. Using molecular dynamics (MD) simulations, we discovered that this asymmetry is already present in the wild-type (WT) RIIβ 2 C 2 but had been masked in the previous crystal structure. This asymmetry may link to the intrinsic allosteric regulation of all PKA holoenzymes and could also explain why most disease mutations in PKA regulatory subunits are dominant negative. The cryo-EM structure, combined with small-angle X-ray scattering (SAXS), also allowed us to predict the general position of the Dimerization/Docking (D/D) domain, which is essential for localization and interacting with membrane-anchored A-Kinase-Anchoring Proteins (AKAPs). This position provides a multivalent mechanism for interaction of the RIIβ holoenzyme with membranes and would be perturbed in the oncogenic fusion protein. The J-domain also alters several biochemical properties of the RIIβ holoenzyme: It is easier to activate with cAMP, and the cooperativity is reduced. These results provide new insights into how the finely tuned allosteric PKA signaling network is disrupted by the oncogenic J-C subunit, ultimately leading to the development of FL-HCC.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2025

Non-perturbative cathodoluminescence microscopy of beam-sensitive materials

Cathodoluminescence microscopy is now a wellestablished and powerful tool for probing the photonic properties of nanoscale materials, but in many cases, nanophotonic materials are easily damaged by the electronbeam doses necessary to achieve reasonable cathodoluminescence signal-to-noise ratios. Two-dimensional materials have proven particularly susceptible to beam-induced modifications, yielding both obstacles to high spatial-resolution measurement and opportunities for beam-induced patterning of quantum photonic systems. Here pan-sharpening techniques are applied to cathodoluminescence microscopy in order to address these challenges and experimentally demonstrate the promise of pan-sharpening for minimally-perturbative high-spatial-resolution spectrum imaging of beam-sensitive materials.

2D materials↗
DOE OSTI2024

Tracking Seismic Velocity Perturbations at Ridgecrest Using Ballistic Correlation Functions

Abstract We present results based on data of a dense nodal array composed of 147 stations, deployed in 2022 near the epicenter of the 2019 Mw 7.1 Ridgecrest earthquake to investigate characteristics of the seismic wavefields. Through array analyses, we identified two primary components. First, we observed far-field P waves dominating the 0.5–1.2 Hz frequency range, which are likely primarily generated by wind-driven oceanic swell activity. Second, we detected near-field body waves resulting from anthropogenic activities in the frequency range 2–8 Hz. We examined noise correlation functions derived from data of the dense deployment and regional stations to explore fault-zone seismic velocity changes using ballistic arrivals, with a focus on velocity perturbation shortly before and after the Ridgecrest earthquake sequence. Our findings exhibit distinct behavior compared to results obtained through standard coda-wave interferometry. Particularly, we observed a decrease in P-wave travel time on certain station pairs prior to the 2019 earthquake sequence. Supported by detailed investigation of the local seismic wavefields, we interpret the decreasing P-wave travel time as likely caused by a velocity increase away from the fault, possibly related to fluid migration. However, additional information is necessary to verify this hypothesis.

Geochemistry & Geophysics↗
DOE OSTI2021

(U) Using the MCNP6 Perturbation Capability for Source Nuclide Density Sensitivities

The Taylor series (differential operator) perturbation method, as implemented in the PERT capability in MCNP6 (Ref. 1), can be used for first- and second-order sensitivity analyses in fixed-source problems. Unfortunately, the PERT capability does not yet work with point-detector (F5) or pulse-height (F8) tallies. Also, the second-order Taylor series term lacks the cross terms that would allow the calculation of mixed sensitivities. Finally, the PERT capability does not compute any sensitivities involving the source in a fixed-source problem. When neutrons or gamma rays are emitted due to radioactive decay, the source rate density depends intrinsically on the nuclide densities in the source material. When the PERT capability in MCNP6 is used to compute sensitivities of a response to nuclide and material densities, those sensitivities do not include the effect of the source.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

(U) Calculating First-Order Sensitivities to Material Density and Composition in Fixed-Source Problems Using the MCNP6 Perturbation Capability

The Taylor series (differential operator) perturbation method, as implemented in the PERT capability in MCNP6 (Ref. 1), can be used for first-order sensitivity analyses in fixed-source problems.2 Sensitivities of a response with respect to material and nuclide densities can be used for efficient first-order uncertainty quantification. This report discusses how to compute sensitivities of material densities and compositions in order to propagate uncertainties using the standard uncertainty propagation formula.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗
DOE OSTI2022

The Early Career Research Program Annual Progress Report: Using ARM Data and Multiscale Models to Advance the Understanding of Liquid-Phase Cloud Response to Aerosol Perturbation over Ocean and Land

This report is for the first fiscal year of this ECRP project. This ECRP project aims to study the response of liquid-phase clouds to aerosol perturbation and reduce the related uncertainty in the DOE Earth system model. During this fiscal year, this project mainly made progress on the tasks about observational analyses for Objective 1; and successfully set up two Large-Eddy Simulation (LES) models for Objective 2. A postdoctoral researcher and a graduate student summer intern are on board and fully dedicated to this project. In addition to internal collaboration within LLNL, this project has routinely maintained external collaboration with scientists from universities, NASA Langley Research Center, and other DOE national laboratories. For the next reporting period, we plan to complete the tasks scheduled for the second year. Furthermore, we will promote the findings to communities of interest and proactively seek new collaborations to increase the impact of this project.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2020

Risk-Informed MultiPphysics BestEestimate Plus Uncertainties (BEPU) Application Development of RELAP5-3D Perturbation Model

The United States nuclear industry is facing a strong challenge to ensure maximum safety while enhancing economic benefit. Safety is a key parameter to all aspects related to light water reactor (LWR) nuclear power plants (NPPs), especially cost savings. Since the goal is to extend the lifetimes of these NPPs, the traditional deterministic safety concept may not guarantee a current economic asset. The Light Water Reactor Sustainability (LWRS) Program has been promoting a wide range of research and development (R&D) in this field to maximize the safety, economics, and performance of these NPPs through improved scientific understanding. One of the best practices to achieve this goal is to identify and optimize safety margins, which can lead to cost reduction. To do this, under the LWRS framework, the Risk-Informed Systems Analysis (RISA) Pathway will focus on the optimization of safety margin and minimization of uncertainties to ensure both safety and economics at the highest level. The RISA Pathway will provide enhanced capabilities for analyzing and characterizing LWR systems performance by developing and demonstrating methods, tools, and data to enable risk-informed margins management (RIMM). The goals of the RISA Pathway are twofold: (1) deploy the risk-informed tools and methods that enable better representation of safety margins and factors that contribute to cost and safety; and (2) conduct advanced risk assessment applications with industry to support margin management strategies that enable more cost-effective plant operation. The tools and methods provided by the RISA Pathway will support effective margin management for both active and passive safety systems, structures, and components (SSC) of an NPP. The tools and methods used in the RISA Pathway should have high confidence and highest technical maturity for and implementation to industry at its current setting. They should also have a capability to support risk-informed decision making for both probabilistic and deterministic elements of safety. The RISA Pathway will, therefore, perform a comprehensive assessment of verification and validation (V&V) status of RISA Toolkit to enhance credibility RISA Toolkit which be used by industry. This report summarizes RELAP5-3D development activities for best estimated and uncertainty (BEPU) capability to support ongoing RISA Pathway pilot projects for risk informed uncertainty quantification applications. Work scope includes (1) development of initial perturbation model for selected closure laws and (2) testing of suitable probability distribution functions (PDF) for the selected correlations. Developed BEPU modules are tested with selected separate effect cases and compared with conventional thermal-hydraulics model.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2023

The Early Career Research Program Annual Progress Report: Using ARM Data and Multiscale Models to Advance the Understanding of Liquid-Phase Cloud Response to Aerosol Perturbation over Ocean and Land

This project aims to study the response of liquid-phase clouds to aerosol perturbation and reduce the related uncertainty in the DOE Earth system model. Specific objectives include: Objective 1: Quantify the aerosol indirect effect on liquid-phase clouds using ARM observations and satellite retrievals while constraining the confounding large-scale conditions; Objective 2: Harness LES case studies, untangle the confounding meteorological impacts on the observed aerosol indirect effect, and identify key cloud processes controlling the net radiative forcing of aerosol-cloud interactions at different spatiotemporal scales; Objective 3: Evaluate the aerosol indirect effect on liquid-phase clouds with process-level understanding in E3SM multiscale model configurations.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2025

Phenomenological Chiral Perturbation Theory for Event Generators

Understanding neutrino induced single pion production off of nucleons is crucial for accelerator-based neutrino oscillation experiments. To this end, we use chiral perturbation theory to determine the forms of meson and baryon interactions and then modify the vertices using form factors. We implement this single pion production model in an event generator pipeline that will be available to the wider community.

Toman, Miša [UC, Irvine] (ORCID:0009000326471281)↗
DOE OSTI2026

Investigation of the Suppression of Edge Localized Modes by Resonant Magnetic Perturbations in NSTX/NSTX-U (Final Technical Report)

The purpose of the grant was to investigate the suppression of edge localized modes by resonant magnetic perturbations in both NSTX and NSTX-U. Unfortunately, the project quickly exhausted all of the relevant experimental data from NSTX. It was originally intended to use new data from NSTX-U, when it restarted. However, the considerable delay in the restart made this impossible. Hence, with the permission of DOE, the grant was pivoted toward a more general examination of the MHD stability of tokamak plasmas.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2021

Predicting Metabolic Reaction Networks with Perturbation-Theory Machine Learning (PTML) Models

Background: Checking the connectivity (structure) of complex Metabolic Reaction Networks(MRNs) models proposed for new microorganisms with promising properties is an importantgoal for chemical biology. Objective: In principle, we can perform a hand-on checking (Manual Curation). However, this is achallenging task due to the high number of combinations of pairs of nodes (possible metabolic reactions). Results: The CPTML linear model obtained using the LDA algorithm is able to discriminate nodes(metabolites) with the correct assignation of reactions from incorrect nodes with values of accuracy,specificity, and sensitivity in the range of 85-100% in both training and external validation dataseries. Methods: In this work, we used Combinatorial Perturbation Theory and Machine Learning techniquesto seek a CPTML model for MRNs >40 organisms compiled by Barabasis’ group. First, wequantified the local structure of a very large set of nodes in each MRN using a new class of node indexcalled Markov linear indices fk. Next, we calculated CPT operators for 150000 combinationsof query and reference nodes of MRNs. Last, we used these CPT operators as inputs of differentML algorithms. Conclusion: Meanwhile, PTML models based on Bayesian network, J48-Decision Tree and RandomForest algorithms were identified as the three best non-linear models with accuracy greaterthan 97.5%. The present work opens the door to the study of MRNs of multiple organisms usingPTML models.

Pharmacology & Pharmacy↗
DOE OSTI2021

Data From: Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N-2, Journal of Geophysical Research-Biogeosciences

This data package contains pumping data (.txt), parameter matrices, and R code (.R, .RData) to perform bootstrapping for parameter selection for the bioclogging model development. The pumping data were collected from the Russian River Riverbank Filtration site located in Sonoma County, California from 2010-2017 from three riverbank collection wells located alongside the study site. The pumping data is directly correlated with water table oscillations, so the code performs these correlations and simulates stochastic versions of water table oscillations. See Metadata Description.pdf for full details on dataset production. This dataset must be used with the R programming language. This dataset and R code is associated with the publication "Influence of Hydrological Perturbations and Riverbed Sediment Characteristics on Hyporheic Zone Respiration of CO2 and N-2"This research was supported by the Jane Lewis Fellowship from the University of California, Berkeley, the Sonoma County Water Agency (SCWA), the Roy G. Post Foundation Scholarship, the U.S. Department of Energy, Office of Science Graduate Student Research (SCGSR) Program, U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under award DE-AC02-05CH11231, and the UFZ-Helmholtz Centre for Environmental Research, Leipzig, Germany.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

Central Density and Low-Mode Perturbation Control of Inertial Confinement Fusion Dynamic-Shell Targets

The dynamic-shell target is a new class of design for inertial confinement fusion (ICF). These targets address some of the target fabrication challenges prevalent in current ICF targets and take advantage of advances in manufacturing technologies. This study first examines how the dynamic-shell design can be used to control the density of the central region and therefore convergence ratio, thus expanding the design space for ICF. Additionally, the concern of low-mode perturbation growth is considered. A new class of high-performing beam configurations, based on icosahedral polyhedra and charged-particle simulations is proposed. These configurations achieve low levels of irradiation nonuniformity through selection of beam shapes that suppress the dominant symmetrical mode.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗
DOE OSTI2026

Context-dependent coordination of TOR and SnRK1 signaling under carbon and nitrogen perturbations

Target of rapamycin (TOR) and sucrose non-fermenting 1–related protein kinase 1 (SnRK1) are conserved regulators of plant growth and metabolism and are often portrayed as functionally antagonistic under nutrient limitation. However, how this relationship operates across different nutrient contexts remains poorly defined. Here, we generated an Arabidopsis dual-reporter line that enables simultaneous monitoring of TOR and SnRK1 activities and profiled their dynamics under carbon and nitrogen perturbations. We found that TOR and SnRK1 activities overall exhibit a negative relationship during the transition from carbon starvation to carbon abundance; however, their temporal dynamics during that transition do not support a strictly inverse correlation. Under dark conditions, TOR activity is gradually repressed, while SnRK1 is initially repressed in the early hours and subsequently activated during extended darkness. During nitrogen starvation, TOR activity is progressively repressed, whereas SnRK1 is activated during early hours and then becomes repressed. In vitro , recombinant SnRK1α1 directly inhibits the activity of immunoprecipitated TOR (IP-TOR), whereas IP-TOR does not directly affect SnRK1α1 activity. Together, these results support a nutrient-dependent model in which TOR and SnRK1 are coordinated primarily by cellular metabolic status.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Configuration–Interaction Perturbation Theory Calculations of Pu II

Configuration–interaction perturbation theory (CI–PT) is applied to calculations of low-energy states of Pu II. This ion is quite challenging due to a large number of possible determinants arising from seven valence electrons and strong relativistic effects. The CI–PT calculations agree with experiments for the energies and g-factors for many low-energy states that allowed positive identification of the theoretical levels. Isotope shifts were also used to aid in identification, and, in case of the odd states, fitting with three independent parameters was used to match theoretical isotope shifts to the experimental values with good accuracy. The CI–PT approach tested here on the Pu II ion can be generally used to calculate properties of many complex atoms, including U I that can find application in fundamental and applied science.

74 ATOMIC AND MOLECULAR PHYSICS↗