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At least 379 records · Page 21

Improving the Capabilities and Computational Efficiency of the RTE+RRTMGP Radiation Code (Final Report)

This report details progress on the RTE+RRTMGP radiation codes made during the period of performance. RTE+RRTMGP is a set of codes for computing radiative fluxes in planetary atmospheres. RRTMGP uses a k-distribution to provide an optical description (absorption and possibly Rayleigh optical depth) of the gaseous atmosphere, along with the relevant source functions, on a pre-determined spectral grid given temperatures, pressures, and gas concentration. RTE computes fluxes given spectrally-resolved optical descriptions and source functions. Spectrally-resolved fluxes are summarized (“reduced”) via a user extensible class. The initial release of the code and the design choices are described in Pincus et al. 2019; the codes are available on Github. Although RRTMGP was based on current (at the time) empirical spectroscopic data, RTE and RRTMGP were developed in large part to modernize software practices. The design focused on flexibility broadly interpreted: by separating code from data and allowing data to drive computation; in coupling to the host model (e.g. the coupling of clouds to radiative fluxes is user-controlled); with respect to programming languages (computational tasks are accessed via widely-compatible C interfaces); and with respect to hardware (the codes run on a range of CPU and GPU architectures). The code also puts an emphasis on modularity and clarity. RTE+RRTMGP v1.0 was released in September 20219. This award supported the evolution of the RTE+RRTMGP code base to support greater flexibility, accuracy, and efficiency.

54 ENVIRONMENTAL SCIENCES↗

Characterization of the Finite Element Computational Fluid Dynamics Capabilities in the Multiphysics Object Oriented Simulation Environment

We report the multiphysics object-oriented simulation environment (moose) is a code package that couples a variety of physics modules, allowing for highly accessible multiphysics simulations. The physics modules include a finite element Navier–Stokes (N–S) module that is designed to solve laminar fluid dynamics problems. The usage of this module in multiple recent studies coupled with the growing interest in moose for usage in nonlight water reactor safety studies by the Nuclear Regulatory Commission (NRC) prompted the authors to investigate the computational fluid dynamics capabilities of moose. A two-dimensional laminar flow past a circular cylinder scenario is simulated in the moose framework to investigate the effectiveness of the N–S module. Simulations assumed an unsteady laminar flow with a Reynolds number of 200. To verify the results from moose, similar simulations were conducted using the well-utilized simulation of turbulent flow in arbitrary regions—computational continuum mechanics C++ (star-ccm + ) finite volume code. Results from both codes are also compared to some results from literature. Velocity and pressure profiles of both transient simulations were compared. The numerical and input errors in moose are also visualized with contour plots to qualitatively understand the evolution of the errors across time and space. The comparisons between moose and star-ccm + showed nearly perfect agreement between the codes for velocity and pressure, especially after the development of the vortex street in later time-steps. The force coefficients showed excellent agreement after the development of the vortex street, but demonstrated notable discrepancies prior to the vortex street development, which is likely due to how each code simulated the approach to the vortex street in earlier time-steps.

97 MATHEMATICS AND COMPUTING↗

A symbolic framework to obtain mid-fidelity models of flexible multibody systems with application to horizontal-axis wind turbines

Abstract. The article presents a symbolic framework (also called computer algebra program) that is used to obtain, in symbolic mathematical form, the linear and nonlinear equations of motion of a mid-fidelity multibody system including rigid and flexible bodies. Our approach is based on Kane's method and a nonlinear shape function representation for flexible bodies. The shape function approach does not represent the state of the art for flexible multibody dynamics but is an effective trade-off to obtain mid-fidelity models with few degrees of freedom, taking advantage of the separation of space and time. The method yields compact symbolic equations of motion with implicit account of the constraints. The general and automatic framework facilitates the creation and manipulation of models with various levels of complexity by adding or removing degrees of freedom. The symbolic treatment allows for analytical gradients and linearized equations of motion. The linear and nonlinear equations can be exported to Python code or dedicated software. There are multiple applications, such as time domain simulation, stability analyses, frequency domain analyses, advanced controller design, state observers, and digital twins. In this article, we describe the method we used to systematically generate the equations of motion of multibody systems and present the implementation of the framework using the Python package SymPy. We apply the framework to generate illustrative land-based and offshore wind turbine models. We compare our results with OpenFAST simulations and discuss the advantages and limitations of the method. The Python implementation is provided as an open-source project.

Branlard, Emmanuel (ORCID:0000000277506128)↗

Low level coupling scheme between neutronics and thermal-hydraulics based on Anderson acceleration

The simulation of nuclear reactors is a multiphysics problem mixing, amongst other fields, neutron transport and thermal-hydraulics. The simplest and most used approach in multiphysics simulation is based on the coupling of single-physics codes in a black-box fashion. However, in order to reduce the computational time needed for such simulations, case-dependent optimizations are often required. In this paper, we aim at reducing the computational time required to solve a coupled neutronic/thermal-hydraulic steady-state problem on a simplified Pressurized Water Reactor (PWR) core. The idea is to deal simultaneously with the coupling of the energy groups of the deterministic neutronic description of the core and its thermal-hydraulic description with the Anderson acceleration. By doing so, the fission source terms are directly accelerated instead of the power map as done in most cases. The power method used to solve the k-eigenvalue problem inside the neutronic solver is thus accelerated with the Anderson acceleration. The numerical experimentations conducted in this work are performed using APOLLO3 and THEDI, and indicate that such coupling strategy improves the convergence rates in terms of number of iterations required and the total computational time. (authors)

22 GENERAL STUDIES OF NUCLEAR REACTORS↗

FTTN: Feature-Targeted Testing for Numerical Properties of NVIDIA & AMD Matrix Accelerators

While NVIDIA has been the dominant provider of GPUs for HPC and ML, now AMD has several offerings of GPUs. This encourages programmers to try out AMD GPUs for new codes and also port existing codes over. Unfortunately, without understanding the floating-point differences between these GPU types, software development or porting can introduce bugs—and currently such an understanding is lacking. The magnitude of this open question becomes clear if one imagines the the number of floating-point precision choices (FP16, FP32, etc.), floating-point formats (standard floats, brain-float, etc.), and execution units available (elementary units, matrix/tensor cores, etc.) Questions such as rounding modes and subnormal support are also important. Most of these answers are unknown today or are hard to access. We provide the first testing-guided approach that answers a significant number of these questions. We also devise tests to reveal internal information (e.g., extra bits kept) to make sure that our findings are reliable. Many of our tests employ systematically generated random-programs, others apply fast-math flags and some involve fused multiplyadd. Especially for tensor/matrix cores, the tests have nontrivial logic that we present Our testing approach is reusable for the plethora of GPUs yet to be introduced. Our findings include up to 7 ulps of difference between NVIDIA and AMD for sin and cos at FP32 precision and 3 ulp at FP64. In our study of matrix cores (NVIDIA) and tensor cores (AMD), we have extensively characterized rounding modes (truncation versus round-to-nearest), the number of extra internal bits kept (whether 3 bits are kept or not), subnormal support for inputs and outputs across four different floating-point formats and across NVIDIA A100 and AMD MI250X GPUs. We believe that this wealth of data becoming available for the first time may help avoid significant porting bugs when migrating code across these platforms.

Li, Xinyi↗

Photochemically Induced Acousto-optics Fluid Simulations

PIAFS is a finite-difference code to solve the compressible Navier-Stokes equations with chemical heating on Cartesian grids. It models chemical reactions of air (oxygen and carbon dioxide) with ozone subject to radiation. It uses a high-order WENO spatial discretization and explicit Runge-Kutta time integration. It is capable of parallel simulations using MPI. The code is written in C/C++.

Oudin, AlbertineN [Lawrence Livermore National Lab↗

QA/QC-ed Groundwater Level Time Series in PLM-1 and PLM-6 Monitoring Wells, East River, Colorado (2016-2022)

This data set contains QA/QC-ed (Quality Assurance and Quality Control) water level data for the PLM1 and PLM6 wells. PLM1 and PLM6 are location identifiers used by the Watershed Function SFA project for two groundwater monitoring wells along an elevation gradient located along the lower montane life zone of a hillslope near the Pumphouse location at the East River Watershed, Colorado, USA. These wells are used to monitor subsurface water and carbon inventories and fluxes, and to determine the seasonally dependent flow of groundwater under the PLM hillslope. The downslope flow of groundwater in combination with data on groundwater chemistry (see related references) can be used to estimate rates of solute export from the hillslope to the floodplain and river. QA/QC analysis of measured groundwater levels in monitoring wells PLM-1 and PLM-6 included identification and flagging of duplicated values of timestamps, gap filling of missing timestamps and water levels, removal of abnormal/bad and outliers of measured water levels. The QA/QC analysis also tested the application of different QA/QC methods and the development of regular (5-minute, 1-hour, and 1-day) time series datasets, which can serve as a benchmark for testing other QA/QC techniques, and will be applicable for ecohydrological modeling. The package includes a Readme file, one R code file used to perform QA/QC, a series of 8 data csv files (six QA/QC-ed regular time series datasets of varying intervals (5-min, 1-hr, 1-day) and two files with QA/QC flagging of original data), and three files for the reporting format adoption of this dataset (InstallationMethods, file level metadata (flmd), and data dictionary (dd) files).QA/QC-ed data herein were derived from the original/raw data publication available at Williams et al., 2020 (DOI: 10.15485/1818367). For more information about running R code file (10.15485_1866836_QAQC_PLM1_PLM6.R) to reproduce QA/QC output files, see README (QAQC_PLM_readme.docx). This dataset replaces the previously published raw data time series, and is the final groundwater data product for the PLM wells in the East River. Complete metadata information on the PLM1 and PLM6 wells are available in a related dataset on ESS-DIVE: Varadharajan C, et al (2022). https://doi.org/10.15485/1660962. These data products are part of the Watershed Function Scientific Focus Area collection effort to further scientific understanding of biogeochemical dynamics from genome to watershed scales. 2022/09/09 Update: Converted data files using ESS-DIVE’s Hydrological Monitoring Reporting Format. With the adoption of this reporting format, the addition of three new files (v1_20220909_flmd.csv, V1_20220909_dd.csv, and InstallationMethods.csv) were added. The file-level metadata file (v1_20220909_flmd.csv) contains information specific to the files contained within the dataset. The data dictionary file (v1_20220909_dd.csv) contains definitions of column headers and other terms across the dataset. The installation methods file (InstallationMethods.csv) contains a description of methods associated with installation and deployment at PLM1 and PLM6 wells. Additionally, eight data files were re-formatted to follow the reporting format guidance (er_plm1_waterlevel_2016-2020.csv, er_plm1_waterlevel_1-hour_2016-2020.csv, er_plm1_waterlevel_daily_2016-2020.csv, QA_PLM1_Flagging.csv, er_plm6_waterlevel_2016-2020.csv, er_plm6_waterlevel_1-hour_2016-2020.csv, er_plm6_waterlevel_daily_2016-2020.csv, QA_PLM6_Flagging.csv). The major changes to the data files include the addition of header_rows above the data containing metadata about the particular well, units, and sensor description. 2023/01/18 Update: Dataset updated to include additional QA/QC-ed water level data up until 2022-10-12 for ER-PLM1 and 2022-10-13 for ER-PLM6. Reporting format specific files (v2_20230118_flmd.csv, v2_20230118_dd.csv, v2_20230118_InstallationMethods.csv) were updated to reflect the additional data. R code file (QAQC_PLM1_PLM6.R) was added to replace the previously uploaded HTML files to enable execution of the associated code. R code file (QAQC_PLM1_PLM6.R) and ReadMe file (QAQC_PLM_readme.docx) were revised to clarify where original data was retrieved from and to remove local file paths.

54 ENVIRONMENTAL SCIENCES↗

Sequence Length of HIV-1 Subtype B Increases over Time: Analysis of a Cohort of Patients with Hemophilia over 30 Years

We aimed to investigate whether the sequence length of HIV-1 increases over time. We performed a longitudinal analysis of full-length coding region sequences (FLs) during an HIV-1 outbreak among patients with hemophilia and local controls infected with the Korean subclade B of HIV-1 (KSB). Genes were amplified by overlapping RT-PCR or nested PCR and subjected to direct sequencing. Overall, 141 FLs were sequentially determined over 30 years in 62 KSB-infected patients. Phylogenetic analysis indicated that within KSB, two FLs from plasma donors O and P comprised two clusters, together with 8 and 12 patients with hemophilia, respectively. Signature pattern analysis of the KSB of HIV-1 revealed 91 signature nucleotide residues (1.1%). In total, 48 and 43 signature nucleotides originated from clusters O and P, respectively. Six positions contained 100% specific nucleotide(s) in clusters O and P. In-depth FL analysis for over 30 years indicated that the KSB FL significantly increased over time before combination antiretroviral therapy (cART) and decreased with cART. This increase occurred due to the significant increase in env and nef genes, originating in the variable regions of both genes. The increase in sequence length of HIV-1 over time suggests an evolutionary direction.

59 BASIC BIOLOGICAL SCIENCES↗

Architecture for fast implementation of quantum low-density parity-check codes with optimized Rydberg gates

Here, we propose an implementation of bivariate bicycle codes [S. Bravyi et al., Nature (London) 627, 778 (2024)] based on long-range Rydberg gates between stationary neutral atom qubits. An optimized layout of data and ancilla qubits reduces the maximum Euclidean communication distance needed for nonlocal parity-check operators. An optimized Rydberg gate pulse design enables 𝖢𝖹 entangling operations with fidelity $\mathscr{F}$ >0.999 at a distance greater than 12 µ⁢m. The combination of optimized layout and gate design leads to a quantum error correction cycle time of ∼1.2⁢8 ms for a [[144,12,12]] code, which is nearly a factor-of-two improvement over previous designs.

Poole, C. [Univ. of Wisconsin, Madison, WI (United↗

Whole-scene, one-sided backscatter x-ray imaging with coded apertures

X-ray radiography can be an important diagnostic for emergency response, providing timely diagnostic information about a suspect object. However, there are situations where similar information would be better obtained with a one-sided imaging technique. X-ray backscatter imaging is a proven technology that could provide such information, but current implementations have drawbacks that render it unsuitable for emergency response. We are exploring the use of coded-aperture imaging to create one-sided images, targeting a key benefit: implementation requiring minimal additional resources, bypassing logistics issues. We present results demonstrating the feasibility of this approach.

Ziock, Klaus-Peter [ORNL]↗

Nonuniform Absorption and Scattered Light in Direct-Drive Implosions Driven by Polarization Smoothing

Laser-direct-drive symmetric implosions on OMEGA illuminate a target with 60 laser beams and are designed to produce spherical implosions. Each beam is smoothed using orthogonal polarizations obtained by passing through distributed polarization rotators (DPR’s). Observations of the scattered light from OMEGA implosions do not show the expected symmetry and have much larger variation than standard predictions. For the first time, we have quantified the scattered-light nonuniformity from individual beams and identified the DPR’s as the source of the enhanced nonuniformity. An instrument was invented that isolated and measured the variation in the intensity and polarization of the light scattered from each OMEGA beam. The asymmetric intensity and polarization measurements are explained when the on-target offsets between the two orthogonal polarizations produced by the DPR’s are modeled using a 3-D cross-beam energy transfer (CBET) code that tracks the polarizations of each beam. The time-integrated nonuniformity in laser absorption and scattered light due to CBET and the DPR polarization offsets during high-performance OMEGA implosions is predicted to be significant and dominated by low spherical harmonic mode numbers. Further, the nonuniformity is predicted to be greatly reduced by replacing the DPR’s with new optics that create smaller offsets.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

SOLEDGE3X full vessel plasma boundary simulations of ITER non-active phase plasmas

The onset of detachment in the ITER machine is analyzed in this work through the help of 2D-axisymmetric boundary plasma simulations with the SOLEDGE3X-EIRENE code, which features a numerical domain for the plasma solver extending up to the first wall. The plasma boundary is computed in scenarios from the first non-active phase of ITER, in pure H and at 20 MW. This set of simulations is used in two aspects: first, to study the plasma detachment in the divertor, and second, the plasma conditions, fluxes, and beryllium erosion at the first wall. Here, the code results are also compared to those obtained with the well-established SOLPS-ITER code, which includes a plasma numerical domain only covering the main SOL. Results show an increase in the SOL width λ q with increasing density, and a detailed analysis is carried out, for the first time, on each of the different plasma-neutral interactions in the code’s physics model in EIRENE. The gross beryllium erosion rates of first wall panels are estimated from 2D simulations, with the aim of assessing their sensitivity to two parameters: the divertor density regime, and the presence of density shoulders in the far-SOL formed by enhanced perpendicular transport at this location. The erosion contributions from neutrals and ions are considered in each case, and the charge-exchange atoms fluxes and energy distributions are provided, highlighting the two atom populations (cold and charge-exchange).

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Strong Scalability Analysis of the Albany Land Ice code on HPC Architectures

Scalability is a critical factor in High-Performance Computing (HPC), where optimizing resource usage has a direct impact on cost-effectiveness and time-efficiency. This report presents a strong scaling performance study of the Albany Land Ice (ALI) code across different HPC architectures, towards determining the best configuration to use when running large-scale simulation ensembles.

97 MATHEMATICS AND COMPUTING↗

Towards high data-rate diffusive molecular communications: A review on performance enhancement strategies

Diffusive molecular communications (DiMC) have recently gained attention as a candidate for nano- to micro- and macro-scale communications due to its simplicity and energy efficiency. As signal propagation is solely enabled by Brownian motion mechanics, DiMC faces severe inter-symbol interference (ISI), which limits reliable and high data-rate communications. Herein, recent literature on DiMC performance enhancement strategies is surveyed; key research directions are identified. Signaling design and associated design constraints are presented. Here, studies on fundamental information theoretic limits of DiMC channel are reviewed. Classical and novel transceiver designs are discussed with an emphasis on methods for ISI mitigation and performance-complexity tradeoffs. Key parameter estimation strategies such as synchronization and channel estimation are considered in conjunction with asynchronous and timing error robust receiver methods. Finally, source and channel coding in the context of DiMC is presented.

42 ENGINEERING↗

Numerical evaluation of photosensitive tracers as a strategy for separating surface and subsurface transient storage in streams

For this work, we numerically evaluated photosensitive tracers as a potential strategy for separating the effects of surface and hyporheic storage zones (SSZs and HSZs, respectively) on stream corridor transport. Correctly separating HSZ and SSZ effects is critical to estimating the hydro-biogeochemical function of a stream because HSZs and SSZs expose solutes to significantly different biogeochemical conditions, like sunlight exposure, microbial processes, and oxygen availability. Our numerical experiments used a multiscale river-corridor transport model implemented in the ATS code, which accommodates multiple storage zones with distinct travel time distributions and biogeochemical reactions. For parameter inferences, we used Bayesian inverse modeling. We found that breakthrough curves for photo-decaying tracers from day and night injection can delineate surface and hyporheic transient storage contributions, but only when interpreted jointly through a two-storage zone model. Numerical experiments that used only daytime injection or interpreted breakthrough curves with a single storage zone model yielded good fit to breakthrough curves, but parameter estimates were biased and controlling processes misattributed, examples of good model fits for the wrong reasons. Using those biased parameter estimates in reactive transport simulations resulted in significantly different projections of denitrification, which underscores the potential for stream function to be mischaracterized if tracer tests are interpreted through an inappropriately simplified model for transient storage. More generally, this study highlights the role of modeling in evaluating the experimental design and identifying the potential of system mischaracterization and its implications.

54 ENVIRONMENTAL SCIENCES↗

Monitoring Preferential Flow of Water in Sand Using Thermoacoustics Wave Imaging

Abstract Accurate predictions of fluid flow, mass transport, and reaction rates critically impact the efficiency and reliability of subsurface exploration and sustainable use of subsurface resources. Quantitative dynamical sensing and imaging can play a pivotal role in the ability to make such predictions. Geophysical thermoacoustic technology has the potential to provide the aforementioned capabilities, since it builds upon the principle that electromagnetic and mechanical wave fields can be coupled through a thermodynamic process. In this letter, we present laboratory experiments featuring the efficacy of thermoacoustic imaging in the monitoring of preferential flow of water in porous media. Our laboratory experimental equipment can be readily packaged in a form factor that fits in a borehole, and the use of multiple acoustic transducers—which can be combined with volumetric coding techniques—has the potential to provide quasi‐real‐time imaging (0.5 Hz video rate) of regions in close proximity (a few meters) of an open field well.

Geology↗

Validation study of RWM stability in DIII-D high- β N plasmas

The n = 1 (n is the toroidal mode number) resistive wall mode (RWM) stability is numerically investigated for two DIII-D high-β N discharges 176440 and 172461, utilizing the MARS-F (Liu et al 2000 Phys. Plasmas 7 3681) and MARS-K (Liu et al 2008 Phys. Plasmas 15 112503) codes. Systematic validation efforts are attempted, for the first time, for discharges with very slow or vanishing toroidal flow for a large fraction of the plasma volume. While gaining physics insights in accessing stable operation regime at β N exceeding the Troyon no-wall limit in these slow-rotation experiments, the predictive capability of fluid and non-perturbative magnetohydrodynamic-kinetic hybrid models for the RWM is further confirmed. The MARS-F fluid model, with a strong but numerically tunable viscosity mimicking ion Landau damping of parallel sound waves, finds complete stabilization of the n = 1 RWM in the considered DIII-D plasmas under the experimental flow conditions. Similarly, either full stabilization (for discharge 176440) or marginal stability (for discharge 172461) of the mode is computed by the MARS-K hybrid model, which is first-principle based without free model parameters. In particular, all drift kinetic resonances, including those of thermal and energetic particles, are found to synergistically act to marginally stabilize the RWM in discharge 172461. These MARS-F/K modeling results explain the experimentally observed stable operational regime in DIII-D, as far as the RWM stability is concerned. Extensive numerical sensitivity studies, with respect to the plasma toroidal flow speed as well as the radial location of the resistive wall, are also carried out to further support the validation study.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

HiFiPDV2 v. 2

SAND2024-01061O The HiFiPDV-2 software is similar to other photonic Doppler velocimetry (PDV) analysis codes in that it converts signals from intensity-time space to frequency-time space using a short-time Fourier transform (STFT). It then analyzes peaks of the resulting power spectral density information to extract the velocity-time history. The unique aspects of HiFiPDV and HiFiPDV-2 are that this reduction process is repeated for an array of reasonable STFT input variables. The resulting population distribution of output velocity-time histories is evaluated to determine the most likely velocity history and its associated uncertainty. This uncertainty is defined as the systematic uncertainty of the PDV signal as it is a function of input values to the reduction process. The HiFiPDV-2 program brings new functionality and efficiency to these calculations—most notably significant reductions in memory usage and calculation times, the ability to evaluate frequency-shifted signals, and the ability to filter out baseline signals. Developers recommend that users have at least 2 GB of RAM per CPU core in their system. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525.

Voorhees, Travis↗