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This study describes the whole genome sequence of Dolosicoccus paucivorans 2991-95 (DSM 15742) isolated from human blood in Cleveland, Ohio. The genome length is approximately 1.8 Mbp with 107 contigs and a G + C content of 37.91%. Annotation identified 1,752 coding genes and multiple virulence factors.
A minority of HIV-1-infected patients produce broadly neutralizing antibodies (bNAbs). Identification of viral and host correlates of bNAb production may help develop vaccines. We aimed to characterize the neutralizing response and viral and host-associated factors in Angola, which has one of the oldest, most dynamic, and most diverse HIV-1 epidemics in the world. Three hundred twenty-two HIV-1-infected adults from Angola were included in this retrospective study. Phylogenetic analysis of C2V3C3 env gene sequences was used for virus subtyping. Env-binding antibody reactivity was tested against polypeptides comprising the C2, V3, and C3 regions. Neutralizing-antibody responses were determined against a reference panel of tier 2 Env pseudoviruses in TZM-bl cells; neutralizing epitope specificities were predicted using ClustVis. All subtypes were found, along with untypeable strains and recombinant forms. Notably, 56% of the patients developed cross neutralizing, broadly neutralizing, or elite neutralizing responses. Broad and elite neutralization was associated with longer infection time, subtype C, lower CD4 + T cell counts, higher age, and higher titer of C2V3C3-specific antibodies relative to failure to develop bNAbs. Neutralizing antibodies targeted the V3-glycan supersite in most patients. V3 and C3 regions were significantly less variable in elite neutralizers than in weak neutralizers and nonneutralizers, suggesting an active role of V3C3-directed bNAbs in controlling HIV-1 replication and diversification. In conclusion, prolonged and low-level envelope V3C3 stimulation by highly diverse and ancestral HIV-1 isolates promotes the frequent elicitation of bNAbs. These results provide important clues for the development of an effective HIV-1 vaccine. Studies on neutralization by antibodies and their determinants in HIV-1-infected individuals have mostly been conducted in relatively recent epidemics caused by subtype B and C viruses. Results have suggested that elicitation of broadly neutralizing antibodies (bNAbs) is uncommon. The mechanisms underlying the elicitation of bNAbs are still largely unknown. We performed the first characterization of the plasma neutralizing response in a cohort of HIV-1-infected patients from Angola. Angola is characterized by an old and dynamic epidemic caused by highly diverse HIV-1 variants. Remarkably, more than half of the patients produced bNAbs, mostly targeting the V3-glycan supersite in HIV-1. This was associated with higher age, longer infection time, lower CD4 + T cell counts, subtype C infection, or higher titer of C2V3C3-specific antibodies relative to patients that did not develop bNAbs. These results may help develop the next generation of vaccine candidates for HIV-1.
Despite the dominance of Rhodanobacter species in the subsurface of the contaminated Oak Ridge Reservation (ORR) site, very little is known about the mechanisms underlying their adaptions to the various stressors present at ORR. Recently, multiple Rhodanobacter strains have been isolated from the ORR groundwater samples from several wells with varying geochemical properties.
Difficulty in using observations to isolate the impacts of aerosols from meteorology on deep convection often stems from inability to resolve the spatiotemporal variations in the environment serving as the storm’s inflow region. During the DOE TRacking Aerosol Convection interactions ExpeRiment (TRACER) in June-September 2022, a Texas A&M University (TAMU) team conducted a mobile field campaign to characterize the meteorological and aerosol variability in airmasses that serve as inflow to convection across the ubiquitous mesoscale boundaries associated with the sea- and bay-breezes in the Houston, Texas, region. These boundaries propagate inland over the fixed DOE Atmospheric Radiation Measurement (ARM) sites. However, convection occurs on either or both the continental or maritime sides or along the boundary. The maritime and continental airmasses serving as convection inflow may be quite distinct, with different meteorological and aerosol characteristics that fixed-site measurements cannot simultaneously sample. Thus, a primary objective of TAMU TRACER was to provide mobile measurements similar to those at the fixed sites, but in the opposite airmass across these moving mesoscale boundaries. TAMU TRACER collected radiosonde, lidar, aerosol, cloud condensation nuclei (CCN), and ice nucleating particle (INP) measurements on 29 enhanced operations days covering a variety of maritime, continental, outflow, and pre-frontal airmasses. This paper summarizes the TAMU TRACER deployment and measurement strategy, instruments, available datasets, and provides sample cases highlighting differences between these mobile measurements and those made at the ARM sites. We also highlight the exceptional TAMU TRACER undergraduate student participation in high impact learning activities through forecasting and field deployment opportunities.
The microphysical impacts of aerosol particles on scattered isolated deep convective cells near Houston, Texas, on 19 June 2013, are examined using multiple cloud-resolving model (CRM) simulations initialized with vertical profiles of low and high concentrations of cloud droplet–nucleating aerosols. These simulations formed part of the Model Intercomparison Project (MIP) conducted by the Deep Convective Working Group of the Aerosol, Cloud, Precipitation and Climate (ACPC) initiative. Each CRM generated a field of convective cells representing those observed during the case study with varying degrees of accuracy. The Tracking and Object-Based Analysis of Clouds (tobac) cell-tracking algorithm was applied to each MIP CRM simulation to track relatively long-lived convective cells (20–60 min). Most of the CRMs produced similar aerosol loading impacts on the warm phase of tracked cell properties with reduced autoconversion and accretion growth of rain, increased cloud water, reduced rainfall, and reduced near-surface evaporation of rain. The sign of aerosol impacts on the warm-phase properties of the convective cells was also quite consistent over cell lifetimes with the greatest magnitude of influence in the first half of the life cycle in most CRMs. In contrast, the ice-phase response to aerosol loading was highly variable among CRMs and included increases or decreases in ice amounts at inconsistent stages of the cell life cycle and midlevel versus upper-level changes in ice. This intermodel variability in ice is indicative both of the complex indirect interactions between aerosols and ice-phase processes in deep convection and their associated parameterizations.
This is a presentation on the Zonal Isolation Solution for Geothermal Wells by PetroQuip Energy Services, presented by Robert Coon. This video slide presentation discusses the proposed design and development of a multi-stage system consisting of an Open-Hole Packer (OHP), a Locking Bridge Plug (LBP), and a corresponding Locating Profile (LP). This presentation was featured in the Utah FORGE R&D Annual Workshop on August 14, 2024.
The dynamics of isolated-photon plus two-jet production in pp collisions at a centre-of-mass energy of 13 TeV are studied with the ATLAS detector at the LHC using a dataset corresponding to an integrated luminosity of 36.1 fb−1. Cross sections are measured as functions of a variety of observables, including angular correlations and invariant masses of the objects in the final state, γ+jet+jet. Measurements are also performed in phase-space regions enriched in each of the two underlying physical mechanisms, namely direct and fragmentation processes. The measurements cover the range of photon (jet) transverse momenta from 150 GeV (100 GeV) to 2 TeV. The tree-level plus parton-shower predictions from SHERPA and PYTHIA as well as the next-to-leading-order QCD predictions from SHERPA are compared with the measurements. The next-to-leading-order QCD predictions describe the data adequately in shape and normalisation except for regions of phase space such as those with high values of the invariant mass or rapidity separation of the two jets, where the predictions overestimate the data.
Final report for UW effort on project Automated Isolation of Astatine-211 and chemistry evaluation
The goal of this transportation analysis (TA) is to update the 2008 TA in order to evaluate the impacts associated with the transportation of transuranic (TRU) waste from waste generator sites to the Waste Isolation Pilot Plant (WIPP) facility and from waste generator sites to the Idaho National Laboratory (INL).
Detailed simulations of the Atmospheric boundary layer (ABL) provides information on wind velocity, direction and turbulence for optimizing the design of wind turbines and wind farms and their operations. Distributed wind turbines have been considered for use in urban or suburban areas for covering energy needs using a sustainable energy solution. Simulations of high Reynolds number turbulent ABL flows past obstacles can be used for the prediction of the velocity deficit and turbulence characteristics in the leeward side of building-like obstacles, allowing for the estimation of power losses and fatigue loads in wind turbines. However, fully three-dimensional simulations of high Reynolds number ABL flows using Large Eddy Simulation (LES) or Reynolds Average Navier-Stokes Simulations (RANS) continue to require large computational/ execution times. As a result, these 3D simulations may not be ideal tools for the rapid assessment of wind energy potential. In the present study, 3D numerical results from wall resolved RANS simulations were used for the development of a low order model that allows the rapid assessment of wind velocity and turbulence in the leeward side of an isolated building.
Experimental measurements of room closure in salt repositories are valuable for understanding the evolution of the underground and for validating geomechanical models. Room closure was measured during a number of experiments at the Waste Isolation Pilot Plant (WIPP) during the 1980's and 1990's. Most rooms were excavated using a multi-pass mining sequence, where each pass necessarily destroyed some of the mining sequence closure measurement points. These destroyed points were promptly reinstalled to capture the closure after the mining pass. After the room was complete, the mining sequence closure measurement stations were supplemented with remotely read closure measurement stations. Although many aspects of these experiments were thoroughly documented, the digital copies of the closure data were inadvertently destroyed, the non-trivial process of zeroing and shifting the raw closure measurements after each mining pass was not precisely described, the various closure measurements within a given room were not directly compared on the same plot, and the measurements were collected for several years longer than previously reported. Consequently, the hand-written mining sequence closure measurements for Rooms D, B, G, and Q were located in the WIPP archives, digitized, and reanalyzed for this report. The process of reconstructing the mining sequence closure histories was documented in detail and the raw data can be found in the appendices. Within the mid-section of a given room, the reconstructed closure histories were largely consistent with other mining sequence and remotely read closure histories, which builds confidence in the experiments and suggests that plane strain is an appropriate modeling assumption. The reconstructed closure histories were also reasonably consistent with previously published results, except in one notable case: the reconstructed Room Q closure histories 30 days after excavation were about 45 % less than the corresponding closures reported in Munson's 1997 capstone paper.
For individuals, businesses, and communities focused on building resilient electrical grid infrastructure, wind energy can provide an affordable, accessible, and compatible distributed energy resource option that also enhances the capabilities of local grid operations. However, there are technical barriers to realizing the market value and resilience benefits of distributed wind, and there is little to no ability to quantify those benefits so that stakeholders can compare grid investment options. The central aims of this report are: (1) to drive technology transfer of the methods and technologies developed under the Microgrids, Infrastructure Resilience, and Advanced Controls Launchpad (MIRACL) project and (2) increase the number of referenceable case studies available to stakeholders interested in additional value-added capabilities of wind systems beyond bulk energy supply. We achieve this aim by applying three major methods developed under MIRACL to two real-world distributed wind reference systems. The two real-world distributed wind reference systems are the isolated grid of St. Mary’s, Alaska, and the two 10.5-megawatt (MW) front-of-the-meter wind turbine deployments owned and operated by Iowa Lakes Electric Cooperative (ILEC).
Kalion has successfully demonstrated a fermentation route using glucose as the feedstock. This game-changing technology allows Kalion to economically produce large-scale quantities of high-purity glucaric acid products. Kalion has also developed a novel downstream processing strategy for isolating and purifying glucaric acid forms, including the free acid, monoammonium glucarate, and monopotassium glucarate. Despite the low solubility of these products, significant water removal is needed prior to crystallization, requiring energy intensive evaporation or reverse osmosis. Here, we work in collaboration with the Separations Consortium to develop novel, low-cost means of water removal in Kalion’s glucarate/glucaric acid purification process. This proposed CRADA project with national labs (ORNL, ANL, and NREL) evaluated various technologies developed by the Separations Consortium as applied to glucaric acid purification, intended to generate a scalable, cost-effective, energy-efficient process. Four approaches were evaluated with mock aqueous solutions of glucaric acid or glucarate, and the results analyzed with respect to separation effectiveness and potential cost savings. The leading technology will then be further developed and tested with actual clarified or non-clarified broth (depending on the approach) obtained from 20L fermentations provided by Kalion, that will contain inorganic ions, byproducts, and residual sugars in addition to the product.
An extremely halophilic archaeon (Halobacterium sp., WIPP strain), isolated from WIPP halite, was tested for its ability to grow in media containing various combinations of sodium and magnesium chloride that influenced overall ionic strength and water activity. Halobacterium sp. grew well in most tested salt combinations, and its growth appeared to depend more upon the relative contribution of sodium to overall ionic strength than on other parameters. Growth rates were highest when media consisted of at least 2 M NaCl and lowest when NaCl dropped below 20% of the ionic strength (usually less than 0.5 M). High magnesium concentrations (1 and 1.5 M MgCl 2 ) did not prevent Halobacterium sp. growth, as long as the sodium contribution was sufficient. Water activity was not a definitive factor in determining growth, because this value did not reach an extreme lower limit in the experimental media.
This report summarizes analysis conducted to support a case study under the Feedstock-Conversion Interface Consortium (FCIC) focused on techno-economic analysis (TEA) modeling to quantify the yield and cost ramifications for processing isolated anatomical fractions of corn stover through a low-temperature conversion (biochemical pathway) biorefinery. It is hypothesized that different individual anatomical fractions of corn stover vary in composition and recalcitrance, such that processing each fraction on its own e.g. through dedicated campaigns may enable economic benefits relative to processing the whole stover material. To investigate this concept, we worked with FCIC researchers to obtain data on compositional analysis, as well as processing conditions and yields, for conversion of whole corn stover plus three individual anatomical fractions (cobs, husks, and stalks) across key steps of the biorefinery conversion process within FCIC research scope, namely pretreatment and enzymatic hydrolysis. After running the data through the TEA models, fractionated cobs and husks achieved higher fuel yields and lower minimum fuel selling prices than whole corn stover, but stalks fared worse than whole stover on both metrics. The most direct takeaway from this assessment is that a biorefinery would stand to benefit economically from maximizing the use of cob and husk fractions while avoiding or minimizing the use of stalks, though recognizing practical constraints with this approach in maintaining an equivalent processing capacity (fixed at 2,000 dry metric tonne per day in all cases).
Understanding astrophysical phenomena involving compact objects requires an insight about the engine behind core-collapse supernovae (SNe) and the fate of the stellar collapse of massive stars. In particular, this insight is crucial in developing an understanding of the origin and formation channels of the growing populations of detected black hole-black hole, black holeneutron star and neutron star-neutron star mergers. The timescale of convection growth may have a large effect on the strength of SN explosion and therefore also on the mass distribution of stellar remnants. We adopt new formulas for the relation between the pre-SN star properties and their remnants (Fryer et al. 2022) and check how they impact population of double compact object (DCO) mergers formed via isolated binary evolution. The new formulas give one ability to test wide spectrum of assumptions on the convection growth time. In particular, different variants allow for a smooth transition between having a deep mass gap and a remnant mass distribution filled by massive neutron stars and low mass black holes. We present distribution of masses, mass ratios and the local merger rate densities of DCO for different variants of new formulas and test them together with different approaches to other highly uncertain processes. We find that mass distribution of DCO mergers is sensitive to adopted assumption on SN convection growth timescale up to $m_1$ + $m_2$ ≲ 35$M_⊙$. Between two extreme tested variants the probability of compact object formation within the mass gap may differ up to ~ 2 orders of magnitude.
Liquid Argon Time Projection Chambers (LArTPCs) are precision detectors used extensively in neutrino physics. The MicroBooNE experiment at Fermilab is one of the experiments employing this technique and has collected 5 years of data from 2015-2021. The primary signal in LArTPCs is ionisation, but argon also emits large quantities of scintillation light, which can be used for calorimetry, timing and background rejection. Prompt scintillation light in MicroBooNE is recorded with an array of 32 PhotoMultiplier Tubes (PMTs). To enable the full use of scintillation light in the experiment, it is important to characterize the efficiency of light collection in the detector, i.e. the light yield. We present a new method of measuring the light yield using isolated proton interactions, which enables a position-dependent light yield measurement to map the response of the detector across its volume. This method can be used to calibrate the light response in large-scale LArTPC detectors as well as to test assumptions used in simulating scintillation light.
A mini split cooling system will be used to maintain temperature requirements in a mobile secure transport system. While the split cooling system was designed to be used in static residential or commercial applications, it was selected for this transportation application due to a unique set of security requirements. However, the system’s ability maintain reliability and survive prolonged long-term shock and vibration is a significant concern. The mitigation strategy is to select vibration isolation mounts and perform lifetime shock and vibration testing to demonstrate survivability. The goal of this study is to generate a finite element model of the system and perform modal analysis to inform selection of vibration mounts to minimize the amount of vibrational energy transferred to the split cooling system. The scope of this report is limited to study of the condensing unit only, and geometric variation of the assembly will not be allowed.