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At least 55 records · Page 3

Implementation and Exploration of Parameterizations of Large-Scale Dynamics in NCAR's Single Column Atmosphere Model SCAM6

A single column model with parameterized large-scale (LS) dynamics is used to better understand the response of steady-state tropical precipitation to relative sea surface temperature under various representations of radiation, convection, and circulation. The large-scale dynamics are parametrized via the weak temperature gradient (WTG), damped gravity wave (DGW), and spectral weak temperature gradient (Spectral WTG) method in NCAR's Single Column Atmosphere Model (SCAM6). Radiative cooling is either specified or interactive, and the convective parameterization is run using two different values of a parameter that controls the degree of convective inhibition. Results are interpreted in the context of the Global Atmospheric System Studies -Weak Temperature Gradient (GASS-WTG) Intercomparison project. Using the same parameter settings and simulation configuration as in the GASS-WTG Intercomparison project, SCAM6 under the WTG and DGW methods produces erratic results, suggestive of numerical instability. However, when key parameters are changed to weaken the large-scale circulation's damping of tropospheric temperature variations, SCAM6 performs comparably to single column models in the GASS-WTG Intercomparison project. The Spectral WTG method is less sensitive to changes in convection and radiation than are the other two methods, performing qualitatively similarly across all configurations considered. Under all three methods, circulation strength, represented in 1D by grid-scale vertical velocity, is decreased when barriers to convection are reduced. This effect is most extreme under specified radiative cooling, and is shown to come from increased static stability in the column's reference radiative-convective equilibrium profile. This argument can be extended to interactive radiation cases as well, though perhaps less conclusively.

54 ENVIRONMENTAL SCIENCES↗

Friction-mediated phase transition in confined active nematics

Using a minimal continuum model, we investigate the interplay between circular confinement and substrate friction in active nematics. Upon increasing the friction from low to high, we observe a dynamical phase transition from a circulating flow phase to an anisotropic flow phase in which the flow tends to align perpendicular to the nematic director at the boundary. We demonstrate that both the flow structure and dynamic correlations in the latter phase differ from those of an unconfined, active turbulent system and may be controlled by the prescribed nematic boundary conditions. Here, our results show that substrate friction and geometric confinement act as valuable control parameters in active nematics.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗

Spatio-temporal dynamics of Hendra virus in Australia reveal stable maintenance of diverse viral clades among Pteropus bats

Hendra virus (HeV) was discovered in 1994 in Australia. Limited genomic data have hindered comprehensive understanding of HeV’s evolutionary dynamics. Here, in this work, we recovered 48 HeV genomes from bats and 9 from horses from Australia between 2016 and 2020, revealing four distinct clades. Each clade was distributed over a large spatial area with multiple clades co-circulating within a single bat roost on the same day and over consecutive years. The diversity and temporal stability of co-circulating clades suggest that viral dynamics are driven by episodic shedding of existing lineages maintained at the population level, rather than immune-driven strain-replacement dynamics. HeV isolates of different clades displayed variation in phenotypic properties but minimal antigenic differences. We provide an overview of evolutionary dynamics, phenotypic properties and assessment of countermeasures for HeV, and provide insights into the processes that maintain virus diversity in bats and influence the potential for viral emergence.

genetic variation↗

Atmospheric teleconnection processes linking winter air stagnation and haze extremes in China with regional Arctic sea ice decline

Abstract. Recent studies suggested significant impacts of boreal cryosphere changes on wintertime air stagnation and haze pollution extremes in China. However, the underlying mechanisms of such a teleconnection relationship remains unclear. Here we use the Whole Atmosphere Community Climate Model (WACCM) to investigate dynamic processes leading to atmospheric circulation and air stagnation responses to Arctic sea ice changes. We conduct four climate sensitivity experiments by perturbing sea ice concentrations (SIC) and corresponding sea surface temperature (SST) in autumn and early winter over the whole Arctic and three subregions in the climate model. The results indicate distinct responses in circulation patterns and regional ventilation to the region-specific Arctic changes, with the largest increase of both the probability (by 132 %) and the intensity (by 30 %) of monthly air stagnation extremes being found in the experiment driven by SIC and SST changes over the Pacific sector of the Arctic (the East Siberian and Chukchi seas). The increased air stagnation extremes are mainly driven by an amplified planetary-scale atmospheric teleconnection pattern that resembles the negative phase of the Eurasian (EU) pattern. Dynamical diagnostics suggest that convergence of transient eddy forcing in the vicinity of Scandinavia in winter is largely responsible for the amplification of the teleconnection pattern. Transient eddy vorticity fluxes dominate the transient eddy forcing and produce a barotropic anticyclonic anomaly near Scandinavia and wave train propagation across Eurasia to the downstream regions in East Asia. The piecewise potential vorticity inversion analysis reveals that this long-range atmospheric teleconnection of Arctic origin takes place primarily via the middle and upper troposphere. The anomalous ridge over East Asia in the middle and upper troposphere worsens regional ventilation conditions by weakening monsoon northwesterlies and enhancing temperature inversions near the surface, leading to more and stronger air stagnation and pollution extremes over eastern China in winter. Ensemble projections based on state-of-the-art climate models in the Coupled Model Intercomparison Project Phase 6 (CMIP6) corroborate this teleconnection relationship between high-latitude environmental changes and midlatitude weather extremes, though the tendency and magnitude vary considerably among each participating model.

54 ENVIRONMENTAL SCIENCES↗

The Intrinsic 150‐Day Periodicity of the Southern Hemisphere Extratropical Large‐Scale Atmospheric Circulation

Abstract The variability of the Southern Hemisphere (SH) extratropical large‐scale circulation is dominated by the Southern Annular Mode (SAM), whose timescale is extensively used as a key metric in evaluating state‐of‐the‐art climate models. Past observational and theoretical studies suggest that the SAM lacks any internally generated (intrinsic) periodicity. Here, we show, using observations and a climate model hierarchy, that the SAM has an intrinsic 150‐day periodicity. This periodicity is robustly detectable in the power spectra and principal oscillation patterns (aka dynamical mode decomposition) of the zonal‐mean circulation, and in hemispheric‐scale precipitation and ocean surface wind stress. The 150‐day period is consistent with the predictions of a new reduced‐order model for the SAM, which suggests that this periodicity is associated with a complex interaction of turbulent eddies and zonal wind anomalies, as the latter propagate from low to high latitudes. These findings present a rare example of periodic oscillations arising from the internal dynamics of the extratropical turbulent circulations. Based on these findings, we further propose a new metric for evaluating climate models, and show that some of the previously reported shortcomings and improvements in simulating SAM's variability connect to the models' ability in reproducing this periodicity. We argue that this periodicity should be considered in evaluating climate models and understanding the past, current, and projected Southern Hemisphere climate variability.

54 ENVIRONMENTAL SCIENCES↗

Tropical Cirrus in Global Storm-Resolving Models: 1. Role of Deep Convection

Pervasive cirrus clouds in the upper troposphere and tropical tropopause layer (TTL) influence the climate by altering the top-of-atmosphere radiation balance and stratospheric water vapor budget. These cirrus are often associated with deep convection, which global climate models must parameterize and struggle to accurately simulate. By comparing high-resolution global storm-resolving models from the Dynamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains (DYAMOND) intercomparison that explicitly simulate deep convection to satellite observations, we assess how well these models simulate deep convection, convectively generated cirrus, and deep convective injection of water into the TTL over representative tropical land and ocean regions. The DYAMOND models simulate deep convective precipitation, organization, and cloud structure fairly well over land and ocean regions, but with clear intermodel differences. All models produce frequent overshooting convection whose strongest updrafts humidify the TTL and are its main source of frozen water. Intermodel differences in cloud properties and convective injection exceed differences between land and ocean regions in each model. We argue that, with further improvements, global storm-resolving models can better represent tropical cirrus and deep convection in present and future climates than coarser-resolution climate models. To realize this potential, they must use available observations to perfect their ice microphysics and dynamical flow solvers.

54 ENVIRONMENTAL SCIENCES↗

Collective dynamics of polarized spin-half fermions in relativistic heavy-ion collisions

Standard relativistic hydrodynamics has been successful in describing the properties of the strongly interacting matter produced in the heavy-ion collision experiments. Recently, there has been a significant theoretical advancement in this field to explain spin polarization of hadrons emitted in these processes. Although current models have successfully explained some of the experimental data based on the coupling between spin polarization and vorticity of the medium, they still lack a clear understanding of the differential measurements. This is commonly interpreted as an indication that the spin needs to be treated as an independent degree of freedom whose dynamics is not entirely bound to flow circulation. In particular, if the spin is a macroscopic property of the system, in equilibrium its dynamics should follow hydrodynamic laws. Here, we develop a framework of relativistic hydrodynamics which includes spin degrees of freedom from the quantum kinetic theory for Dirac fermions and use it for modeling the dynamics of matter. Following experimental observations, we assume that the polarization effects are small and derive conservation laws for the net baryon current, the energy–momentum tensor and the spin tensor based on the de Groot–van Leeuwen–van Weert definitions of these currents. We present various properties of the spin polarization tensor and its components, analyze the propagation properties of the spin polarization components, and derive the spin-wave velocity for arbitrary statistics. We find that only the transverse spin components propagate, analogously to the electromagnetic waves. Finally, using our framework, we study the space–time evolution of the spin polarization for the systems respecting certain space–time symmetries and calculate the mean spin polarization per particle, which can be compared to the experimental data. We find that, for some observables, our spin polarization results agree qualitatively with the experimental findings and other model calculations.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Mesoscale Convective Systems Tracking Method Intercomparison (MCSMIP): Application to DYAMOND Global km‐Scale Simulations

Abstract Global kilometer‐scale models represent the future of Earth system modeling, enabling explicit simulation of organized convective storms and their associated extreme weather. Here, we comprehensively evaluate tropical mesoscale convective system (MCS) characteristics in the DYAMOND (DYnamics of the atmospheric general circulation modeled on non‐hydrostatic domains) simulations for both summer and winter phases. Using 10 different feature trackers applied to simulations and satellite observations, we assess MCS frequency, precipitation, and other key characteristics. Substantial differences (a factor of 2–3) arise among trackers in observed MCS frequency and their precipitation contribution, but model‐observation differences in MCS statistics are more consistent across trackers. DYAMOND models are generally skillful in simulating tropical mean MCS frequency, with multi‐model mean biases ranging from −2%–8% over land and −8%–8% over ocean (summer vs. winter). However, most DYAMOND models underestimate MCS precipitation amount (23%) and their contribution to total precipitation (17%). Biases in precipitation contributions are generally smaller over land (13%) than over ocean (21%), with moderate inter‐model variability. While models better simulate MCS diurnal cycles and cloud shield characteristics, they overestimate MCS precipitation intensity and underestimate stratiform rain contributions (up to a factor of 2), particularly over land, albeit observational uncertainties exist. Additionally, models exhibit a wide range of precipitable water in the tropics compared to reanalysis and satellite observations, with many models showing exaggerated sensitivity of MCS precipitation intensity to precipitable water. The MCS metrics developed here provide process‐oriented diagnostics to guide future model development.

54 ENVIRONMENTAL SCIENCES↗

Tropical Cirrus in Global Storm-Resolving Models. Part II: Cirrus Life Cycle and Top-of-Atmosphere Radiative Fluxes

Cirrus clouds of various thicknesses and radiative characteristics extend over much of the tropics, especially around deep convection. They are difficult to observe due to their high altitude and sometimes small optical depths. They are also difficult to simulate in conventional global climate models, which have coarse grid spacings and simplified parameterizations of deep convection and cirrus formation. We investigate the representation of tropical cirrus in global storm-resolving models (GSRMs), which have higher spatial resolution and explicit convection and could more accurately represent cirrus cloud processes. This study uses GSRMs from the DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains (DYAMOND) project. The aggregate life cycle of tropical cirrus is analyzed using joint albedo and outgoing longwave radiation (OLR) histograms to assess the fidelity of models in capturing the observed cirrus cloud populations over representative tropical ocean and land regions. The proportions of optically-thick deep convection, anvils, and cirrus vary across models and are portrayed in the vertical distribution of cloud cover and top-of-atmosphere radiative fluxes. Model differences in cirrus populations, likely driven by subgrid processes such as ice microphysics, dominate over regional differences between convectively-active tropical land and ocean locations.

54 ENVIRONMENTAL SCIENCES↗

Mesoscale Convective Systems in DYAMOND Global Convection‐Permitting Simulations

Abstract This study examines the deep convection populations and mesoscale convective systems (MCSs) simulated in the DYAMOND (DYnamics of the atmospheric general circulation modeled on non‐hydrostatic domains) winter project. A storm tracking algorithm is applied to six DYAMOND simulations and a global high‐resolution satellite cloud and precipitation data set for comparison. The simulated frequencies of tropical deep convection and organized convective systems vary widely among models and regions, although robust MCSs are generally underestimated. The diurnal cycles of MCS initiation and mature stages are well simulated, but the amplitudes are exaggerated over land. Most models capture the observed MCS lifetime, cloud shield area, rainfall volume and movement speed. However, cloud‐top height and convective rainfall intensity are consistently overestimated, and stratiform rainfall area and amount are consistently underestimated. Possible causes for the model differences compared to observations and implications for future model developments are discussed.

58 GEOSCIENCES↗

Bimodality in simulated precipitation frequency distributions and its relationship with convective parameterizations

Abstract Bimodality in precipitation frequency distributions is often evident in atmospheric models, but rarely in observations. This study i) proposes a metric to objectively quantify the bimodality in precipitation distributions, ii) evaluates model simulations contributed to the Coupled Model Intercomparison Project (CMIP) phase 5 (CMIP5), phase 6 (CMIP6), and the DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains (DYAMOND) project by comparing them to satellite-based and reanalysis precipitation products, and iii) investigates possible origins of bimodal precipitation distributions. Our results reveal that about 83% (20 out of 24) of CMIP5 and 70% (21 out of 30) of CMIP6 models used in this study exhibit bimodal distributions. The few DYAMOND models that use a deep convective parameterization also show bimodal distributions, while most DYAMOND models do not. Predictably, the bimodality originates from the separation of precipitation process between resolved grid-scale and parameterized subgrid-scale. However, in a larger number of models bimodality arises from the parameterized subgrid-scale convective precipitation alone.

54 ENVIRONMENTAL SCIENCES↗

The Simple Cloud-Resolving E3SM Atmosphere Model Running on the Frontier Exascale System

We present an efficient and performance portable implementation of the Simple Cloud Resolving E3SM Atmosphere Model (SCREAM). SCREAM is a full featured atmospheric global circulation model with a nonhydrostatic dynamical core and state-of-the-art parameterizations for microphysics, moist turbulence and radiation. It has been written from scratch in C++ with the Kokkos library used to abstract the on-node execution model for both CPUs and GPUs. SCREAM is one of only a few global atmosphere models to be ported to GPUs. As far as we know, SCREAM is the first such model to run on both AMD GPUs and NVIDIA GPUs, as well as the first to run on nearly an entire Exascale system (Frontier). On Frontier, we obtained a record setting performance of 1.26 simulated years per day for a realistic cloud resolving simulation.

Taylor, Mark↗

A protocol and analysis of year-long simulations of global storm-resolving models and beyond

We propose a protocol to evaluate and analyze year-long simulations of global storm-resolving models (GSRMs). The proposed protocol complements an earlier 40-day simulation protocol under the DYAMOND (DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domains) project to allow the analysis of the seasonal cycle and associated climatic relevant phenomena. This intercomparison aims to reveal how GSRMs, which can simulate mesoscale convective systems (MCSs) in the global domain, reproduce atmospheric large-scale structures related to convection beyond month-long simulations. The intercomparison for one-year simulations is conducted by either atmosphere-only models or atmosphere–ocean coupled models with atmospheric horizontal mesh sizes less than 5 km. We recommend the continuous four seasons from March 2020 to February 2021 as a target period for the intercomparison but with options for many groups to join more flexibly. The output variables are collected at 0.25° resolution, and archives of a small set of native grid variables are encouraged to analyze tropical cyclones and MCSs. Through the proposed global storm-resolving simulation, we will evaluate the climatological distributions of the atmospheric large-scale circulations, such as the Intertropical Convergence Zone (ITCZ), monsoon, midlatitude jets, their time evolution, and the upscale impacts on them. We present sample analyses from a one-year simulation using the 3.5 km mesh Nonhydrostatic Icosahedral Atmospheric Model (NICAM), revealing the realistic zonal contrast of tropical precipitation, no double ITCZ structure, the reasonable midlatitude jet position and intensity but a weak bias of storm track activities, and a warm bias over the Eurasia during boreal winter. We also clarify the cross-scale interaction, such as the effects of cold pools on mean precipitation over the Maritime Continent through the precipitation diurnal cycle and the effects of resolved gravity waves on midlatitude mean flows. The proposed one-year simulation protocol is referred to as the “Sendai Protocol.” This protocol is not unique or definite for evaluating GSRMs; we prospect a hierarchical set of experiments from short-term to multi-year simulations as GSRM intercomparisons.

54 ENVIRONMENTAL SCIENCES↗

Object-Based Evaluation of Tropical Precipitation Systems in DYAMOND Simulations over the Maritime Continent

The present study uses an object-based evaluation metric to examine the precipitation bias over the Maritime Continent in the global cloud-resolving models. We specifically focus on the difference between the models that directly resolve convection and those using convection parameterization. The 40-day hindcast experiments of the DYnamics of the Atmospheric general circulation Modeled On Non-hydrostatic Domain (DYAMOND) intercomparison project are evaluated against the high-resolution satellite rainfall products. The hindcast of the Central Weather Bureau Global Forecast System (CWBGFS) under the DYAMOND protocol is also included. The results indicate that most models simulate insufficient numbers of large precipitation system [object-based precipitation system (OPS), > 370 km in scale], indicating weaker convection organization. The observation indicates that the maximum precipitation within the OPS intensifies with increasing object size. All of the models capture this positive relationship, but most of them overestimate the sensitivity. Most of the models overestimate both the frequency and intensity of small OPS (< 160 km), except for the models with convection parameterization [i.e., CWBGFS, European Centre for Medium-Range Weather Forecasts Integrated Forecasting System (IFS)-9 km]. Although most of the models can reproduce the observed peak time of diurnal precipitation over the land area in the Maritime Continent, the simulated fractional contribution of different sizes of OPS to the total precipitation varies from model to model, and their peak times do not follow the observed ones with delayed peak times as the size of OPS increases from small, mid-size, to large categories. Most of the models reasonably capture the mean diurnal cycle peak time, but only the models with convection parameterization and Model for Prediction Across Scales (MPAS) can represent the diurnal evolution of fractional contribution from different OPSs. The implications of the current results to the upscale processes of the tropical convection systems in the global models are also discussed.

54 ENVIRONMENTAL SCIENCES↗

The Flux-Differencing Discontinuous Galerkin Method Applied to an Idealized Fully Compressible Nonhydrostatic Dry Atmosphere

Dynamical cores used to study the circulation of the atmosphere employ various numerical methods ranging from finite-volume, spectral element, global spectral, and hybrid methods. In this work, we explore the use of Flux-Differencing Discontinuous Galerkin (FDDG) methods to simulate a fully compressible dry atmosphere at various resolutions. We show that the method offers a judicious compromise between high-order accuracy and stability for large-eddy simulations and simulations of the atmospheric general circulation. In particular, filters, divergence damping, diffusion, hyperdiffusion, or sponge-layers are not required to ensure stability; only the numerical dissipation naturally afforded by FDDG is necessary. We apply the method to the simulation of dry convection in an atmospheric boundary layer and in a global atmospheric dynamical core in the standard benchmark of Held and Suarez

54 ENVIRONMENTAL SCIENCES↗

Collective effect of thermal plumes on temperature fluctuations in a closed Rayleigh–Benard convection cell

Here, we report a systematic study of the collective effect of thermal plumes on the probability density function (PDF) P(δT) of temperature fluctuations δT(t) in turbulent Rayleigh-Benard convection. By decomposing δT(t) into four basic fluctuation modes associated with single and multiple warm and cold plumes and a turbulent background, we derive an analytic form of P(δT) based on the convolutions of the five independent modes. To test the derived form of P(δT) in the multiple-plume regions, where the thermal plumes are heavily populated, we conduct time series measurements of temperature fluctuations in two convection cells; one is a vertical thin disk and the other is an upright cylinder of aspect ratio unity. For a given normalized position in most regions of the convection cell, all of the measured PDFs P(δT) for different Rayleigh numbers fall onto a single master curve, once δT is normalized by its rms value σ T . It is found that the measured P(δT / σT ) at different locations along the symmetric horizontal and vertical axes of the convection cells can all be well described by the derived form of P(δT / σT ). The fitted values of the parameters associated with the number of plumes in multiple plume clusters and their relative strengths and degrees of intermittency are closely linked to the spatial distribution of thermal plumes and local dynamics of the large-scale circulation in a closed convection cell. Our work thus provides a unified theoretical approach for understanding scalar PDFs in a turbulent field, which is very useful not only for the present study but also for the study of many turbulent mixing problems of practical interest.

42 ENGINEERING↗

An Optimized Parameterization of Sub‐Grid Scale Advection for Convection Permitting Models

Convection‐permitting models (CPMs) explicitly resolve deep convection yet under‐resolve the organized lateral exchanges among drafts and their environment that control entrainment/detrainment, precipitation efficiency, and mesoscale structure. In this work, we introduce the Optimized Advection Scheme (OAS), which introduces a small rotation of the Cartesian frame of reference for the horizontal winds relative to other variables used in advection that induces cross‐gradient transport to mimic under‐resolved convective mixing. The rotation angle is selected to minimize the Kullback–Leibler divergence between the simulated and satellite observed precipitation intensity distributions, yielding a physically consistent perturbation that is computationally inexpensive and portable. Optimized Advection Scheme is implemented in WRF and evaluated over Amazon (April 2014). It shifts precipitation–precipitable‐water joint distributions toward lighter rain, reduces overly intense rates, and improves mesoscale convective system (MCS) lifetime and propagation. Mechanistically, the added cross‐gradient transport promotes convective detrainment and environmental mixing, which cools and moistens the mid‐troposphere, weakens downward momentum transport, alleviates excessive downwelling shortwave biases, and warms the surface temperature. The optimized rotation angle yields comparable improvements at 4‐km and 1‐km grid spacing, demonstrating resolution‐independent benefits across the CPM gray zone. By targeting the dynamical root of under‐mixed convective circulations, rather than tuning model microphysics or closures, OAS delivers robust, scale‐aware improvements in precipitation statistics, cloud vertical structure, and characteristics of MCS (MCSs), offering a practical pathway to more reliable CPM simulations for weather and climate applications.

CPM↗

Adaptative Survival of Aspergillus fumigatus to Echinocandins Arises from Cell Wall Remodeling Beyond β-1,3-glucan Synthesis Inhibition

Antifungal echinocandins inhibit the biosynthesis of β-1,3-glucan, a major and essential polysaccharide component of the fungal cell wall. However, the efficacy of echinocandins against the pathogen Aspergillus fumigatus is limited. Here, we use solid-state nuclear magnetic resonance (ssNMR) and other techniques to show that echinocandins induce dynamic changes in the assembly of mobile and rigid polymers within the A. fumigatus cell wall. The reduction of β-1,3- glucan induced by echinocandins is accompanied by a concurrent increase in levels of chitin, chitosan and highly polymorphic α-1,3-glucans, whose physical association with chitin maintains cell wall integrity and modulates water permeability. The rearrangement of the macromolecular network is dynamic and controls the permeability and circulation of the drug throughout the cell wall. Thus, our results indicate that echinocandin treatment triggers compensatory rearrangements in the cell wall that may help A. fumigatus to tolerate the drugs’ antifungal effects.

59 BASIC BIOLOGICAL SCIENCES↗