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xLPR Post-Processing Documentation

The outputs available in the xLPR Version 2.0 code can be analyzed using statistical techniques that have been developed to compare sampling scheme selection, identify inputs for importance sampling, and assess result convergence and uncertainty. These techniques were developed and piloted for both the xLPR Scenario Analysis (SA) Report and the xLPR Sensitivity Analysis Template. This document provides a walk-through of the post-processing R code that was used to generate the results and figures presented in these documents. This page intentionally left blank.

97 MATHEMATICS AND COMPUTING↗

Advanced Diagnostics for High Pressure Spray Combustion.

The development of accurate predictive engine simulations requires experimental data to both inform and validate the models, but very limited information is presently available about the chemical structure of high pressure spray flames under engine- relevant conditions. Probing such flames for chemical information using non- intrusive optical methods or intrusive sampling techniques, however, is challenging because of the physical and optical harshness of the environment. This work details two new diagnostics that have been developed and deployed to obtain quantitative species concentrations and soot volume fractions from a high-pressure combusting spray. A high-speed, high-pressure sampling system was developed to extract gaseous species (including soot precursor species) from within the flame for offline analysis by time-of-flight mass spectrometry. A high-speed multi-wavelength optical extinction diagnostic was also developed to quantify transient and quasi-steady soot processes. High-pressure sampling and offline characterization of gas-phase species formed following the pre-burn event was accomplished as well as characterization of gas-phase species present in the lift-off region of a high-pressure n-dodecane spray flame. For the initial samples discussed in this work several species were identified, including polycyclic aromatic hydrocarbons (PAH); however, quantitative mole fractions were not determined. Nevertheless, the diagnostic developed here does have this capability. Quantitative, time-resolved measurements of soot extinction were also accomplished and the novel use of multiple incident wavelengths proved valuable toward characterizing changes in soot optical properties within different regions of the spray flame.

Skeen, Scott A.↗

Omics-Lethal Human Viruses, Ebola Experiment EHUVEC001

The purpose of this experiment was to evaluate the human host response to Zaire Ebola wild-type virus and mutant virus infection in VP30 expression background. Samples were obtained from human umbilical cord endothelial cells (HUVEC) infected with wild-type Zaire Ebola virus in the ΔVP30 background (deltaVP30-WT) and mutant lacking the mucin domain (deltaVP30-deltamucin) encoding a glycoprotein lacking the mucin domain for mRNA transcriptome expression analysis. Secondary host-associated viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Transcriptomics dataset downloads have a direct relationship to a primary sample submission corresponding to a specific Ebola virus infection.

59 BASIC BIOLOGICAL SCIENCES↗

Neutron diffraction and thermoelectric properties of indium filled In x Co 4 Sb 12 ( x =0.05, 0.2) and indium cerium filled Ce 0.05 In 0.1 Co 4 Sb 12 skutterudites: Neutron diffraction and thermoelectric properties of In/Ce skutterudites

The thermoelectric properties on polycrystalline single (In) and double filled (Ce, In) skutterudites are characterized between 300 and 700 K. Powder neutron diffraction measurements of the skutterudite compositions In x Co 4 Sb 12 (x= 0.05, 0.2) and Ce 0.05 In 0.1 Co 4 Sb 12 as a function of temperature (12- 300 K) were carried out, which gives more insight into the structural data of single and double-filled skutterudites. Our results show that due to the annealing treatment, a Sb deficiency is detectable and thus verifies defects at the Sb lattice site of the skutterudite. Furthermore, we show by electron microprobe analysis that a considerable amount of indium is lost during synthesis and post-processing for the single indium filled samples, but not for the double cerium and indium skutterudite sample. The double-filled skutterudite is superior to the single-filled skutterudite composition due to a higher charge carrier density, a comparable lattice thermal resistivity, and a higher density of states effective mass in our experiment. Finally, we obtained a significantly higher Einstein temperature for the double-filled skutterudite composition in comparison to the single-filled species, which reflects the high sensitivity due to filling of the void lattice position within the skutterudite crystal.

36 MATERIALS SCIENCE↗

A survey study on arsenic speciation in coal fly ash and insights into the role of coal combustion conditions

Coal fly ashes (CFAs) are the low-density byproducts of the coal combustion process. Improper or uncontrolled CFA disposal poses significant environmental and health concerns due to the potential leaching of toxic heavy metals such as arsenic (As). Previous studies have investigated the content and speciation of As in different CFA samples, yet systematic information on As speciation in CFA with representative coal source and combustion conditions is still missing. Based on a recent survey study on the typical coal sources and combustion conditions across the U.S., this study selected 19 representative CFA samples to systematically investigate As speciation and potential correlations with these parameters. The composition, morphology, mineralogy, and As speciation of these CFA samples were characterized by complementary analytical, microscopic, and spectroscopic techniques. Synchrotron X-ray spectroscopy and microscopy analyses revealed the dominant As oxidation state to be As(V) and with strong associations to Ca, with the exception of 3 samples that had 19–51% As(III), likely due to the use of selective catalytic reduction (SCR) process. Principal component analysis was conducted to identify potential correlations of As concentration and oxidation state with parameters such as major element content, loss on ignition (LOI), average particle size, coal source, and combustion condition. Al 2 O 3 and FeO content were found to capture a majority of the variability. Further, results from this study provide fundamental basis for understanding the correlations between coal source, combustion conditions, CFA characteristics, and As speciation, and providing insights for downstream beneficial utilization or disposal management.

01 COAL, LIGNITE, AND PEAT↗

Spectroscopy-based isotopic (δ 13 C) analysis for high spatial resolution of carbon exchange in the rhizosphere

The rhizosphere is a highly dynamic zone bridging plant roots with needed nutrient resources in soil. While the rhizosphere may be small, it has a disproportionally large impact on plant success and biomass production. A suite of rhizosphere-hosted microbial and geochemical interactions facilitate nutrient acquisition by plant roots, and, in turn, the roots stimulate these processes by supplying organic carbon into the rhizosphere. The small physical dimensions of the rhizosphere, however, can constrain efforts to elucidate key carbon exchange processes and their spatial extent and localization. We present a method for spatially resolved δ 13 C analysis of rhizosphere samples by coupling laser ablation (LA) sampling with isotopic analysis using capillary absorption spectroscopy (CAS) which differs from conventional mass spectrometer (MS) approaches. The CAS system has high sensitivity (requires fewer nanomoles of CO 2 per analysis) than comparable MS systems, which enables reduced sample size requirements to thereby improve spatial resolution (from 25 μm to as low as a projected 5 μm spatial resolution). We demonstrate the utility of CAS using rhizosphere samples from switchgrass plants exposed to 13 CO 2 . As a result, this technique will provide a capability for tracking the extent and spatial distribution of root exudate into the rhizosphere at highly detailed spatial scales.

59 BASIC BIOLOGICAL SCIENCES↗

Results of the International Energy Agency Round Robin on Fast Pyrolysis Bio-oil Production

An international round robin study of the production of fast pyrolysis bio-oil was undertaken. Fifteen institutions in six countries contributed. Three biomass samples were distributed to the laboratories for processing in fast pyrolysis reactors. Samples of the bio-oil produced were transported to a central analytical laboratory for analysis. The round robin was focused on validating the pyrolysis community understanding of production of fast pyrolysis bio-oil by providing a common feedstock for bio-oil preparation. The round robin included: •distribution of 3 feedstock samples from a common source to each participating laboratory; •preparation of fast pyrolysis bio-oil in each laboratory with the 3 feedstocks provided; •return of the 3 bio-oil products (minimum 500 ml) with operational description to a central analytical laboratory for bio-oil property determination. The analyses of interest were: density, viscosity, dissolved water, filterable solids, CHN, S, trace element analysis, ash, total acid number, pyrolytic lignin, and accelerated aging of bio-oil. In addition, an effort was made to compare the bio-oil components to the products of analytical pyrolysis through GC/MS analysis. The results showed that clear differences can occur in fast pyrolysis bio-oil properties by applying different reactor technologies or configurations. The comparison to analytical pyrolysis method suggested that Py-GC/MS could serve as a rapid screening method for bio-oil composition when produced in fluid-bed reactors. Furthermore, hot vapor filtration generally resulted in the most favorable bio-oil product, with respect to water, solids, viscosity, and total acid number. These results can be helpful in understanding the variation in bio-oil production methods and their effects on bio-oil product composition.

09 BIOMASS FUELS↗

Hydrothermal synthesis of vanadium pentoxide nanowires

Nanowires of V{sub 2}O{sub 5} were prepared via hydrothermal route using NH{sub 4}VO{sub 3} as precursor in the presence of sulfuric acid at 120°C for 24 h. This synthesis process is free of any templates and reducing agents. Thermal analysis showed a phase change at 350°C and the samples were annealed at 500°C. The XRD analysis showed the monoclinic phase for the as-prepared and orthorhombic phase of V{sub 2}O{sub 5} when annealed at 500°C. Characteristic Raman peaks also expressed the same structural features. Microstructure analysis by SEM showed the nanowire structure of V{sub 2}O{sub 5} with thickness in the range of 20–50 nm and length in micrometers. The possible mechanisms of formation of the nanowires were schematically explained based on the layered structure of V{sub 2}O{sub 5}.

77 NANOSCIENCE AND NANOTECHNOLOGY↗

The structural properties of Zr-based bulk metallic glasses subjected to high pressure torsion at different temperatures

The structural properties of a Zr{sub 62}Cu{sub 22}Al{sub 10}Fe{sub 5}Dy{sub 1} bulk metallic glasses were investigated. Cylindrical rods of the Zr{sub 62}Cu{sub 22}Al{sub 10}Fe{sub 5}Dy{sub 1} BMG were subjected to high pressure torsion at temperatures of 20°C and 150°C. X-ray diffraction, transmission electron microscopy were used to determine peculiarities of the modified structure. Analysis of fracture surfaces, nanohardness measurements were conducted to investigate the influence of structural changes on mechanical behavior of processed samples.

75 CONDENSED MATTER PHYSICS, SUPERCONDUCTIVITY AND↗

Human Host Cellular Response to HCoV-229E Infection Transcriptomics (ACS-DP1)

The purpose of this experiment was to evaluate the human host cellular response to wild-type Human coronavirus strain 229E (HCoV-229E) infection. Sample data was obtained for mock and infected immortalized human lung epithelial cells (A549) (MOI 5), immortalized human lung fibroblasts cells (MRC5) (MOI5), and primary human airway epithelial (HAE) (MOI 3) cells from lung tissue. Sample data was acquired using an Illumina HiSeq 2000 sequencer system and processed for RNA sequencing (RNA-Seq) expression analysis.

59 BASIC BIOLOGICAL SCIENCES↗

What shapes the far-infrared spectral energy distributions of galaxies?

To explore the connection between the global physical properties of galaxies and their far-infrared (FIR) spectral energy distributions (SEDs), we study the variation in the FIR SEDs of a set of 51 hydrodynamically simulated galaxies, both mergers and isolated systems representative of low- and high-redshift galaxies, that are generated by performing dust radiative transfer in post-processing. We study the FIR SEDs using principal component (PC) analysis, and find that 97% of the variance in the sample can be explained by two PCs. The first PC characterizes the wavelength of the peak of the FIR SED, and the second encodes the breadth of the SED. We find that the coefficients of both PCs can be predicted well using a double power law in terms of the IR luminosity and dust mass, which suggests that these two physical properties are the primary determinants of galaxies’ FIR SED shapes. Incorporating galaxy sizes does not significantly improve our ability to predict the FIR SEDs. Our results suggest that the observed redshift evolution in the effective dust temperature at a fixed IR luminosity is not driven by geometry: the SEDs of z∼2−3 ultraluminous IR galaxies (ULIRGs) are cooler than those of local ULIRGs, not because the high-redshift galaxies are more extended, but rather because they have higher dust masses at fixed IR luminosity. Finally, based on our simulations, we introduce a two-parameter set of SED templates that depend on both IR luminosity and dust mass.

79 ASTRONOMY AND ASTROPHYSICS↗

Omics-Lethal Human Viruses, West Nile Experiment WDC010

The purpose of this experiment was to evaluate the host response to wild-type West Nile virus (WNVMT) and mutant (WNVE218A) virus infection. Sample data was obtained from primary mouse myeloid dendritic cells for mRNA and proteomics expression analysis. See Experiment WDC011 (GSE75222) for corresponding independent biological replicate study. Secondary host-associated viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics and transcriptomics, each dataset download has a direct relationship to a primary sample submission corresponding to a specific West Nile virus infection.

59 BASIC BIOLOGICAL SCIENCES↗

The Impact of Furnace-Testing on the Microstructure of an Irradiated U-Mo Fuel Plate

The Material Management and Minimization Program (formerly known as the Reduced Enrichment for Research and Test Reactor Program) is responsible for converting research reactors that use highly enriched uranium (HEU) fuels to ones that use low-enriched uranium (LEU) fuels. As part of the development of LEU fuels, a variety of irradiation experiments are being conducted using the Advanced Test Reactor. In addition to the reactor tests, there is interest in generating information about the transient behavior of irradiated fuel plates. For example, it is of interest to determine the temperature at which a blister will form on the surface of a fuel plate, due to fission gas release from the fuel meat, for a particular fuel plate design. Since in-pile testing to determine the 'blister threshold' (the temperature where a blister forms on the surface of a fuel plate) in plate-type fuel is very difficult and expensive and has historically been deemed impractical for fuel qualification testing, an out-of-pile 'blister test' has been developed and employed. This post-irradiation blister anneal test was developed as a conservative simulation of in-pile behavior and has been routinely used for many research reactor fuel designs currently in use. In this test, the irradiated fuel plate is inserted into a furnace at a given temperature, soaked for a period of time, and removed for inspection. If no visible blisters appear, the furnace temperature is increased, and the plate is soaked and inspected again. This process continues until blisters are observed. Recently, a section from an irradiated U-7Mo dispersion fuel plate with Al-4043 matrix, which has a nominal composition of 4.81Si-0.20Fe-0.14Ti-0.16Cu-0.01Cr 0.01Mn-bal Al, was tested in a furnace located in the Hot Fuel Examination Facility, located at the Idaho National Laboratory, up to 500 deg. C, at which point blisters were observed on the surface of the fuel plate section. A sample near the blistered region of the fuel plate section was then characterized using scanning electron (SEM) and transmission electron microscopy (TEM). This paper discusses the results of this characterization and how they compare to those generated for a similar sample characterized after fabrication but before irradiation and for a sample characterized after irradiation but before furnace testing. One goal of this work is to identify the changes in the microstructure during blister testing that contribute to the eventual release of fission gas that results in the development of blisters. SEM analysis of the furnace-tested sample showed that in some locations of the U-7Mo particles, Al-4043 matrix constituents (primarily Si) had penetrated the microstructure along grain boundaries. This provided potential pathways for increased fission gas migration in the fuel meat microstructure during the furnace heating process. Some attack of these boundaries was also observed in the as-fabricated U-7Mo/Al-4043 sample, but there appeared to be additional attack during the furnace annealing. Besides the changes observed in grain boundary features, the TEM analysis showed that the fission gas bubbles that are typically present in the intra-granular regions of the as-irradiated U-7Mo microstructure as a fission gas bubble superlattice had changed in size, morphology, and distribution. The result of this may be an increase in the mobility of the fission gas in intra-granular regions of the fuel. The complete implications of the changes in fission gas morphology and distribution in the fuel meat microstructure and their impact on blistering continues to be investigated. (authors)

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

An Analysis of the Sensitivity of Proteogenomic Mapping of Somatic Mutations and Novel Splicing Events in Cancer

Improvements in mass spectrometry (MS)-based peptide sequencing provide a new opportunity to determine whether polymorphisms, mutations and splice variants identified in cancer cells are translated. Herein we therefore describe a proteogenomic data integration tool (QUILTS) and illustrate its application to whole genome, transcriptome and global MS peptide sequence datasets generated from a pair of luminal and basal-like breast cancer patient derived xenografts (PDX). The sensitivity of proteogenomic analysis for singe nucleotide variant (SNV) expression and novel splice junction (NSJ) detection was probed using multiple MS/MS process replicates. Despite over thirty sample replicates, only about 10% of all SNV (somatic and germline) were detected by both DNA and RNA sequencing were observed as peptides. An even smaller proportion of peptides corresponding to NSJ observed by RNA sequencing were detected (<0.1%). Peptides mapping to DNA-detected SNV without a detectable mRNA transcript were also observed demonstrating the transcriptome coverage was also incomplete (~80%). In contrast to germ-line variants, somatic variants were less likely to be detected at the peptide level in the basal-like tumor than the luminal tumor raising the possibility of differential translation or protein degradation effects. In conclusion, the QUILTS program integrates DNA, RNA and peptide sequencing to assess the degree to which somatic mutations are translated and therefore biologically active. By identifying gaps in sequence coverage QUILTS benchmarks current technology and assesses progress towards whole cancer proteome and transcriptome analysis.

Environmental Molecular Sciences Laboratory↗

Advances in Resin Management Using 3R-Scan - 20154

The most important factor underlying optimal waste management is developing a clear picture of the radioactivity content of the waste and its impact on waste disposal cost. For over 35 years since the publishing of 10CFR61, waste characterization has relied on sampling the final waste product after formation. In the days following 10CFR61, the cost of final disposal was marginal with only a small impact on the overall costs. Constraints were added by provisions of the Low Level Waste Policy Act of 1985 leading to increasingly limited access to those disposal sites that remained available. In addition, Nuclear Regulatory Commission (NRC) pressure promoting waste volume reduction led to disposal costs inevitably rising. Despite this, characterization practices in monitoring of waste generation for activity content still center on the same dated processes. This results in a disposal classification on the basis of endpoint sampling without consideration of the homogeneity of the waste mixture. It can also disregard consideration of the representativeness of the single or small sample base. As a minimum effort, a formalized sampling program of a fixed grouping of waste streams can be implemented that could account for more than 95% of all of the activity carried in solid waste products. The sample results for each radionuclide could then be trended as time passes to develop reasonable scaling factors for difficult to measure radionuclides. This process, identified in NRC guidance, has been rigorously followed by a relatively small number of facilities. The trended scaling factors serve to improve accuracy by identifying anomalous results that could otherwise go undetected. Direct monitoring of the accumulation of activity in process streams generating solid radwaste, including demineralizers and filter streams, is a more precise approach. Nearly all of these streams are monitored by plant chemistry on a regular schedule to maintain water quality. This paper discusses viable options for developing the basis for characterization through process monitoring of the accumulation of activity at the point of generation. Special focus is on resin bed tracking and how process knowledge of these streams can be brought together to form a consistent and precise solid waste radioactivity inventory. Some of the specific points covered in this paper include the merger of the fission product release computer program, 3R-STAT, with the radwaste sample analysis computer program, SCAN4 to create 3R-SCAN, the importance of individual waste stream influences on the overall source term, and the use of historic sample data to develop scaling factors using an automated process. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Aerial Lidar and Geomorphic Change Detection Software- Tools for Monitoring Canyon Sediments at LANL - 18668

The Los Alamos National Laboratory Environmental Remediation program has conducted extensive geomorphic surveys of sediment deposits in the canyon bottoms within and surrounding the facility. The goal of the geomorphic surveys was to provide basic information needed to characterize chemical inventories of the sediments downstream of historical release sites. Sediment units were mapped based on depositional setting and age. Representative characterization samples were collected for each unit and submitted for chemical analysis. Chemical inventories were estimated by calculating the total volume of each depositional unit and multiplying by average chemical concentration. This method of characterization provides a spatial distribution of chemical data based on fluvial processes. In general, for the canyon bottom sediments, the higher concentrations of industrial chemicals were associated with fine-grained floodplain deposits closest to the source. Since initial characterization, many of the reaches have undergone changes in response to post-wildfire floods and severe rain events. These events impacted the channel and floodplain deposits. Much of the elevated concentrations are confined to the over-bank deposits distal from the primary channel. In order to ensure that the sediment units containing elevated chemical concentrations are stable, repeat aerial light detection and ranging (LiDAR) surveys are conducted and changes are assessed using the Geomorphic Change Detection (GCD) plug-in for ArcGIS. These tools provide high confidence uncertainty estimates and extensive areal coverage. This is a valuable method for long-term monitoring of surface sediments with low-level but widespread contaminant distributions. All of the monitored canyon bottom reaches pass risk assessment and present technically infeasible sediment removal options. Following the 2014 monsoon season, aerial LiDAR data has been collected annually and the resulting digital elevation models (DEMs) processed using the GCD method. Changes are identified using GCD and are verified by field walk downs. If erosion is identified in areas which are vulnerable to mobilizing contaminated sediment, enhanced controls can be installed to stabilize banks or other areas with high erosion potential. Annual sediment monitoring samples are collected where there is evidence for flow and deposition within the past year. Since 2014, no severe floods have been catalogued using the LiDAR surveys and GCD software. The recent rainfall/runoff events have not caused major changes to the canyon bottom channels and floodplains. Geomorphic processes identified in the monitoring results include channel aggradation and incision that over the course of a monsoon season results in minor changes to the system. Other active processes contributing to observed changes are minor slides, flows, slumps, and falls of unconsolidated sediment on steep bedrock or soil surfaces. A comprehensive baseline has been established by geomorphic mapping and characterization sampling. Periodic monitoring consists of LiDAR surveys and GCD analysis which offers an effective and defensible methodology for documenting stability of surface sediments. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗

Microstructure-Oriented Scientific Analysis of Irradiated Concrete

The inventors are continuing development of this technology expanding a database of concrete irradiation samples. Said software may help the recertification process for nuclear power plants and may find use in characterization of cement infrastructure. UT-Battelle tech transfer will work with the inventors to identify software developers in the nuclear industry that may be interested in further development of this software.

Giorla, Alain B↗

Omics-Lethal Human Viruses, Ebola Experiment EH001

The purpose of this experiment was to evaluate the human patient peripheral blood mononuclear cells (PBMC) response to Zaire Ebola Makona virus infection during the 2013-2016 epidemic in West Africa. Samples were obtained from whole blood collections from human patients in 2015 who were naturally infected with Ebola virus during the West African Ebola virus epidemic and healthy individuals (6 month collections) where resulting blood serum was processed for proteome, metabolome, and lipidome expression analysis. Secondary host-associated viral dataset downloads contain one or more statistically processed (normalization data transformation) quantitative dataset collections resulting in qualitative expression analyses of primary host-pathogen experimental study designs. Leveraging unique high-resolution Omics capabilities for proteomics, metabolomics, and lipidomics dataset downloads each have a direct relationship to a primary sample submission corresponding to a specific Ebola virus infection.

59 BASIC BIOLOGICAL SCIENCES↗