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At least 613 records · Page 34

An overlapping domain decomposition method for large-scale problems

Discretization of dynamical models defined through partial differential equations leads to large-scale systems. Time-depending condition involves an iterative integration of such kind of systems. In this paper, a novel technique based on overlapped domain decomposition, without preconditioner and scalable, is presented. Due to the domain decomposition, subproblems are solved in parallel without communications, cutting off the computation time and optimizing the computational cost. This direct method describes an optimized parallel strategy to solve the initial problem, providing the exact solution, up to rounding errors. Moreover, it takes into account both physical nature of the problem and deriving numerical properties of the system. It is highly recommended in case of band matrices and a long time interval because of an increasing gain in terms of performance and computational cost with the number of integrations. A deep analysis of the computational cost concludes the paper.

97 MATHEMATICS AND COMPUTING↗

Parallel algorithms for mapping pipelined and parallel computations

Many computational problems in image processing, signal processing, and scientific computing are naturally structured for either pipelined or parallel computation. When mapping such problems onto a parallel architecture it is often necessary to aggregate an obvious problem decomposition. Even in this context the general mapping problem is known to be computationally intractable, but recent advances have been made in identifying classes of problems and architectures for which optimal solutions can be found in polynomial time. Among these, the mapping of pipelined or parallel computations onto linear array, shared memory, and host-satellite systems figures prominently. This paper extends that work first by showing how to improve existing serial mapping algorithms. These improvements have significantly lower time and space complexities: in one case a published O(nm sup 3) time algorithm for mapping m modules onto n processors is reduced to an O(nm log m) time complexity, and its space requirements reduced from O(nm sup 2) to O(m). Run time complexity is further reduced with parallel mapping algorithms based on these improvements, which run on the architecture for which they create the mappings.

Nicol, David M.↗

Performance limitations in parallel processor simulations

A jet-engine model is partitioned and simulated on a parallel processor system consisting of five 8086/8087 floating-point computers. The simulation uses Heun's integration method. A near-optimal parallel simulation (in the sense of minimum execution time) achieves speedup of only 2.13 and efficiency of 42.6 percent, in effect wasting 57.4 percent of the available processing power. A detailed analysis identifies and graphically demonstrates why the system fails to achieve ideal performance (viz., speedup of 5 and efficiency of 100 percent). Inherent characteristics of the problem equations and solution algorithm account for the loss of nearly half of the available processing power. Overheads associated with interprocessor communication and processor synchronization account for only a small fraction of the lost processing power. The effects of these and other factors which limit parallel processor performance are illustrated through real-time timing-analyzer tracers describing the run/idle status of the parallel processors during the simulation.

O'Grady, E. Pearse↗

A global-local finite element method suitable for parallel computations

A global-local finite element analysis procedure is developed based on the fast convergent nature of FEM in displacement. A special scheme is used to utilize the global displacement solution as boundary conditions for local regions of interest. In the local region, a refined mesh is used for further stress analysis. This global-local procedure can be easily programmed in parallel on MIMD multi-processor computers for significant time savings. A Sequent Balance 21000 system is used for demonstrating the parallel programming.

Sun, C. T.↗

Fast Numerical Solution of the Plasma Response Matrix for Real-time Ideal MHD Control

To help effectuate near real-time feedback control of ideal MHD instabilities in tokamak geometries, a parallelized version of A.H. Glasser’s DCON (Direct Criterion of Newcomb) code is developed. To motivate the numerical implementation, we first solve DCON’s δW formulation with a Hamilton-Jacobi theory, elucidating analytical and numerical features of the ideal MHD stability problem. The plasma response matrix is demonstrated to be the solution of an ideal MHD Riccati equation. We then describe our adaptation of DCON with numerical methods natural to solutions of the Riccati equation, parallelizing it to enable its operation in near real-time. We replace DCON’s serial integration of perturbed modes—which satisfy a singular Euler- Lagrange equation—with a domain-decomposed integration of state transition matrices. Output is shown to match results from DCON with high accuracy, and with computation time < 1s. Such computational speed may enable active feedback ideal MHD stability control, especially in plasmas whose ideal MHD equilibria evolve with inductive timescale $\tau$ ≳ 1s—as in ITER. Further potential applications of this theory are discussed.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

SWAP-Assembler 2: Optimization of De Novo Genome Assembler at Large Scale

In this paper, we analyze and optimize the most time-consuming steps of the SWAP-Assembler, a parallel genome assembler, so that it can scale to a large number of cores for huge genomes with the size of sequencing data ranging from terabyes to petabytes. According to the performance analysis results, the most time-consuming steps are input parallelization, k-mer graph construction, and graph simplification (edge merging). For the input parallelization, the input data is divided into virtual fragments with nearly equal size, and the start position and end position of each fragment are automatically separated at the beginning of the reads. In k-mer graph construction, in order to improve the communication efficiency, the message size is kept constant between any two processes by proportionally increasing the number of nucleotides to the number of processes in the input parallelization step for each round. The memory usage is also decreased because only a small part of the input data is processed in each round. With graph simplification, the communication protocol reduces the number of communication loops from four to two loops and decreases the idle communication time. The optimized assembler is denoted as SWAP-Assembler 2 (SWAP2). In our experiments using a 1000 Genomes project dataset of 4 terabytes (the largest dataset ever used for assembling) on the supercomputer Mira, the results show that SWAP2 scales to 131,072 cores with an efficiency of 40%. We also compared our work with both the HipMER assembler and the SWAP-Assembler. On the Yanhuang dataset of 300 gigabytes, SWAP2 shows a 3X speedup and 4X better scalability compared with the HipMer assembler and is 45 times faster than the SWAP-Assembler. The SWAP2 software is available at https://sourceforge.net/projects/swapassembler.

Meng, Jintao↗

Fast Parallel Computation Of Multibody Dynamics

Constraint-force algorithm fast, efficient, parallel-computation algorithm for solving forward dynamics problem of multibody system like robot arm or vehicle. Solves problem in minimum time proportional to log(N) by use of optimal number of processors proportional to N, where N is number of dynamical degrees of freedom: in this sense, constraint-force algorithm both time-optimal and processor-optimal parallel-processing algorithm.

Fijany, Amir↗

Continental rift evolution and drainage reorganization along the Dead Sea rift since the Miocene

The Dead Sea fault is a section of the Arabian-African plate boundary. Widespread field relations indicate that three major drainage systems (stages) occupied the landscape west of the Dead Sea fault since its initiation at ca. 20 Ma. Specifically, (1) an early to middle Miocene drainage system, only minorly reconfigured by the fault (all sediments of this system belong to the Hazeva Formation); (2) a late Miocene to early Pleistocene fault-parallel drainage system named Paran-Neqarot (all sediments of this system belong to the Arava and Zehiha Formations; and (3) the early Pleistocene to present drainage configuration. The temporal and spatial frameworks of drainage stage 1 are generally constrained by radiometric dating of interfingering volcanic units, and the onset and temporal and spatial frameworks of drainage stage 3 are well constrained by cosmogenic 10 Be surface exposure ages. The timing and longevity of the rift-parallel drainage (stage 2) have until now been evasive to direct dating. The overall time gap between stages 1 and 3 is ~12–13 million years. Thus, an early age (within this time gap) of stage 2 would imply an immediate response of drainage reorganization to rift tectonics, while a later age of this drainage system would imply a delayed response. We present 11 10 Be- 26 Al cosmogenic burial ages of alluvial and colluvial units related to the fault-parallel drainage system (stage 2), which collectively constrain the time of deposition of the Arava Formation sediments in the central Negev to ca. 8 Ma. The general lack of stratigraphic order, together with the large dispersion of ages both across and within the sampling sites, attests to significant recycling of sediments from drainage stage 1 into the Arava Formation deposits. The termination of Arava and Zehiha Formation sediment deposition at ca. 1.8 Ma was determined previously using cosmogenic exposure ages of desert pavements that cover the formations. Combining the previously published data with our new data, we established the longevity and character of the Paran-Neqarot drainage system. In conlcusion, this framework highlights the temporal aspect of drainage system build-up and collapse as it responded to transform and extensional plate boundary tectonics during the Neogene.

58 GEOSCIENCES↗

Methods for design and evaluation of integrated hardware/software systems for concurrent computation

Two testbed programming environments to support the evaluation of a large range of parallel architectures have been implemented under the program Parallel Implementation of Scientific Computing Environments (PISCES). The PISCES 1 environment was applied to two areas of aerospace interest: a sparse matrix iterative equation solver and a dynamic scene analysis system. Currently, the NICE/SPAR testbed system for structural analysis is being modified for parallel operation under PISCES 2; the PISCES 1 applications are also being adapted for PISCES 2. A new formal model of concurrent computation has been developed, based on the mathematical system known as H graph semantics together with a timed Petri net model of the parallel aspects of a system.

Pratt, Terrence W.↗

Technology and future ground processing systems

Land-observing satellites with multiple thematic mappers will produce data at rates of 100 to 300 Mbps. When coupled with a high daily scene production rate, these rates will require new approaches to ground processing. Consideration is given here to future downlink rates and data volumes, and requirements peculiar to the future user community are discussed. The advanced technologies required to attain an operational system in the years 1985-1990 are considered, together with advances foreseen in communications, mass storage, bulk memories, and data processing. Using advanced devices, a centralized data processing system capable of handling the 100 Mbps data rate is described. New approaches, among them a parallel pipelined calibration front-end, real-time browse image production, a high bandwidth optical disk archive, regional image broadcast and massively parallel product production, are considered. A distributed system capable of handling the 300 Mbps data rate is then described. Designs for a hub system and a regional processing center are presented.

Wood, B. J.↗

Cartesian Mesh Simulations for the Third AIAA Sonic Boom Prediction Workshop

Simulation results are presented for all cases from the Third AIAA Sonic Boom Prediction Workshop. An inviscid, embedded-boundary Cartesian-mesh flow solver is used in conjunction with adjoint-based mesh adaptation to compute nearfield pressure signatures. Specialized techniques are applied to maximize accuracy and minimize cost on Cartesian meshes. The Richardson-based error estimate highlights regions of the signatures most sensitive to mesh refinement. Timing results and coarse, medium, and fine mesh sizes for nearfield cases demonstrate that the parallel decomposition approach is efficient in both computational time and wall-clock. Pressure signals are propagated to the ground using an augmented Burgers’ equation solver to predict boom carpets. Ground signatures and loudness metrics are presented for a standard atmosphere as well as more realistic atmospheric profiles, which affect overall noise levels and can significantly widen the boom carpet. Mesh convergence studies show that high sampling frequencies, around 500 kHz, are required for propagation, and the sampling frequency increases at large off-track angles with longer acoustic ray paths and propagation times. The numerical methods yield accurate results for predicting low sonic boom signatures while being among the least computationally expensive of the workshop.

ARMD↗

Very fast motion planning for highly dexterous-articulated robots

Due to the inherent danger of space exploration, the need for greater use of teleoperated and autonomous robotic systems in space-based applications has long been apparent. Autonomous and semi-autonomous robotic devices have been proposed for carrying out routine functions associated with scientific experiments aboard the shuttle and space station. Finally, research into the use of such devices for planetary exploration continues. To accomplish their assigned tasks, all such autonomous and semi-autonomous devices will require the ability to move themselves through space without hitting themselves or the objects which surround them. In space it is important to execute the necessary motions correctly when they are first attempted because repositioning is expensive in terms of both time and resources (e.g., fuel). Finally, such devices will have to function in a variety of different environments. Given these constraints, a means for fast motion planning to insure the correct movement of robotic devices would be ideal. Unfortunately, motion planning algorithms are rarely used in practice because of their computational complexity. Fast methods have been developed for detecting imminent collisions, but the more general problem of motion planning remains computationally intractable. However, in this paper we show how the use of multicomputers and appropriate parallel algorithms can substantially reduce the time required to synthesize paths for dexterous articulated robots with a large number of joints. We have developed a parallel formulation of the Randomized Path Planner proposed by Barraquand and Latombe. We have shown that our parallel formulation is capable of formulating plans in a few seconds or less on various parallel architectures including: the nCUBE2 multicomputer with up to 1024 processors (nCUBE2 is a registered trademark of the nCUBE corporation), and a network of workstations.

Challou, Daniel J.↗

Staged cooling of a fusion-grade plasma in a tokamak thermal quench

Abstract In tokamak disruptions where the magnetic connection length becomes comparable to or even shorter than the plasma mean-free-path, parallel transport can dominate the energy loss and the thermal quench of the core plasma goes through four phases (stages) that have distinct temperature ranges and durations. The main temperature drop occurs while the core plasma remains nearly collisionless, with the parallel electron temperature T e ∥ dropping in time t as T e ∥ ∝ t − 2 and a cooling time that scales with the ion sound wave transit time over the length of the open magnetic field line. These surprising physics scalings are the result of effective suppression of parallel electron thermal conduction in an otherwise bounded, quasineutral, and collisionless plasma, which is different from what are known to date on electron thermal conduction along the magnetic field in a nearly collisionless and quasineural plasma.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

CLIPS meets the connection machine: Or how to create a parallel production system

Production systems usually present unacceptable run-times when faced with applications requiring tens of thousands to millions of facts. Many efforts have focused on the use of parallelism as a way to increase overall system performance. While these efforts have increased pattern matching and rule evaluation rates, they have only indirectly dealt with the problems faced by fact burdened applications. We have implemented PPS, a version of CLIPS running on the Connection Machine, to directly address the problems faced by these applications. This paper will describe our system, discuss its implementation, and present results.

Geyer, Steve↗

Two-Dimensional Sequential and Concurrent Finite Element Analysis of Unstiffened and Stiffened Aluminum and Composite Panels with Hole

The results of a detailed investigation of the distribution of stresses in aluminum and composite panels subjected to uniform end shortening are presented. The focus problem is a rectangular panel with two longitudinal stiffeners, and an inner stiffener discontinuous at a central hole in the panel. The influence of the stiffeners on the stresses is evaluated through a two-dimensional global finite element analysis in the absence or presence of the hole. Contrary to the physical feel, it is found that the maximum stresses from the glocal analysis for both stiffened aluminum and composite panels are greater than the corresponding stresses for the unstiffened panels. The inner discontinuous stiffener causes a greater increase in stresses than the reduction provided by the two outer stiffeners. A detailed layer-by-layer study of stresses around the hole is also presented for both unstiffened and stiffened composite panels. A parallel equation solver is used for the global system of equations since the computational time is far less than that using a sequential scheme. A parallel Choleski method with up to 16 processors is used on Flex/32 Multicomputer at NASA Langley Research Center. The parallel computing results are summarized and include the computational times, speedups, bandwidths, and their inter-relationships for the panel problems. It is found that the computational time for the Choleski method decreases with a decrease in bandwidth, and better speedups result as the bandwidth increases.

Razzaq, Zia↗

Transition From Operation to Decommissioning with a Sudden Decision to Permanent Shutdown and with Parallel Operation On-site - 18559

In a short time the Swedish nuclear operator OKG have to shift from a operator of three nuclear power plants at one site to a company where both decommissioning and operation will take place in parallel for numerous of years as a result of a decision to permanently shut down two of the three reactors. The paper will be focusing on the challenges to change organization and mind-set from operations to decommissioning within parts of a company while still maintaining and developing the highest standard for the plant still in operation, and this in the combination with a decision of permanent shutdown earlier than expected. The paper will also address how OKG managed to create and maintain momentum in essential processes like permits, defueling and project planning before, during and short after the organization was changed and some of the employees had to leave the company. (authors)

12 MANAGEMENT OF RADIOACTIVE AND NON-RADIOACTIVE W↗