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As fundamental building blocks of proteins, helices take different forms including the 3 10 -, α-, and π-helices that feature distinct H-bond networks. The H-bond connectivity is shown to modulate energy transfer efficiency in protein helical structures.
Presented molecules combine two features, the bent-core rigidity with the dimeric character, and reveal variety of specific phases. Longer homologues exhibit tilted smectic phases, short homologues manifest a propensity for helical structures.
The ability to visualize x-ray and neutron emission from fusion plasmas in 3D is critical to understand the origin of the complex shapes of the plasmas in experiments. Unfortunately, this remains challenging in experiments that study a fusion concept known as Magnetized Liner Inertial Fusion (MagLIF) due to a small number of available diagnostic views. Here, we present a basis function-expansion approach to reconstruct MagLIF stagnation plasmas from a sparse set of x-ray emission images. A set of natural basis functions is “learned” from training volumes containing quasi-helical structures whose projections are qualitatively similar to those observed in experimental images. Tests on several known volumes demonstrate that the learned basis outperforms both a cylindrical harmonic basis and a simple voxel basis with additional regularization, according to several metrics. Two-view reconstructions with the learned basis can estimate emission volumes to within 11% and those with three views recover morphology to a high degree of accuracy. The technique is applied to experimental data, producing the first 3D reconstruction of a MagLIF stagnation column from multiple views, providing additional indications of liner instabilities imprinting onto the emitting plasma.
Here, KSTAR has clarified a set of unresolved 3D physics issues utilizing the ITER-like in-vessel, three-row, resonant magnetic perturbation (RMP) configurations. Since RMP-driven, edge-localized-modes (ELMs)-crash control elevates the divertor heat flux peak through its impact on edge plasma parameters and transport, a series of intentionally misaligned RMP configurations (IMCs) have been explored to investigate the relationship between RMP ELM control and divertor heat fluxes, while searching for an ideal IMC that could be favorable in both aspects. First of all, the contrasting influence of kink vs anti-kink phasing on the ELM-crash suppression has been articulated, demonstrating the synergistic benefit of 'kink' phasing on ELM-crash-suppression. On the other hand, the three-row IMC in the anti-kink phasing becomes more insensitive to the ELM-crashes at the sub-marginal level of RMP, consistent with theory. Meanwhile, the divertor 'wetted' area of ELM-crash-suppression gets narrower than that of ELM-crash-mitigation, suggesting that ELM-crash-mitigation remains advantageous over ELM-crash-suppression in terms of time-averaged divertor thermal loading. In comparison, based on a set of two-row IMCs, no evidence of divertor heat flux broadening was found during ELM-crash-suppression, supporting a hypothesis that the dispersal of the divertor heat flux in three-row IMCs cannot be driven by helically structured two-row RMPs alone. Among ITER-like three-rows, lower two-row RMPs have been found to be much more effective in suppressing the ELM-crashes than upper two-row RMPs. Although it is quite preliminary, the up/down asymmetric dependence of RMP coupling may be generically attributed to lower-single-null plasmas. Such a holistic understanding of RMP-driven, ELM-crash-control in KSTAR is expected not only to elucidate various subtle points in the vicinity of ELM-crash-suppression, but also to clarify the relevant divertor thermal loading issues for ITER and beyond.
Magnets with chiral crystal structures and helical spin structures have recently attracted much attention as potential spin-electronics materials, but their relatively low magnetic-ordering temperatures are a disadvantage. While cobalt has long been recognized as an element that promotes high-temperature magnetic ordering, most Co-rich alloys are achiral and exhibit collinear rather than helimagnetic order. Crystallographically, the B20-ordered compound CoSi is an exception due to its chiral structure, but it does not exhibit any kind of magnetic order. Here, we use nonequilibrium processing to produce B20-ordered Co 1+ x Si 1₋ x with a maximum Co solubility of x = 0.043. Above a critical excess-Co content x c = 0.028 ), the alloys are magnetically ordered, and for x = 0.043, a critical temperature $T_c$ = 328 K is obtained, the highest among all B20-type magnets. The crystal structure of the alloy supports spin spirals caused by Dzyaloshinskii-Moriya interactions, and from magnetic measurements we estimate that the spirals have a periodicity of about 17 nm. In this work, our density-functional calculations explain the combination of high magnetic-ordering temperature and short periodicity in terms of a quantum phase transition where excess-cobalt spins are coupled through the host matrix.
We study the forward-backward azimuthal angular correlations of hadrons in association with multiparticle production in the central rapidity region in proton-proton collisions at the LHC. We apply the nucleon energy-energy correlator framework, where the spinning gluon distribution introduces a nontrivial cos(2𝜙) asymmetries. We will demonstrate that the fundamental helicity structure of quantym chromodynamics (QCD) amplitudes predicts a unique power counting rule: cos(2𝜙) asymmetry starts at 𝒪(𝛼$^{2}_{s}$) order for dijet, 𝒪(𝛼 𝑠 ) for three jet and 𝒪(1) for four (and more) jet productions. Our results will help us to understand the longstanding puzzle of nearside ridge behavior observed in high multiplicity events of 𝑝𝑝 collisions at the LHC.
The tetrahedron, as the simplest platonic shape, is a profound building block with the potential to create intricate superstructures. Noteworthy designs utilizing tetrahedral building blocks include the Sierpiński tetrahedron (the most fundamental three-dimensional fractal), a one-dimensional helical structure known as the tetrahelix, and various crystalline and quasicrystalline packings. Historically, the practicality of tetrahedral superstructures has been evident, providing stable, well-defined frameworks for various constructions, including truss bridges, tower cranes, and electricity transmission line pylons. In the field of self-assembled nanocrystal superlattices, tetrahedral nanocrystals, as building blocks, occupy a unique place among all the possible nanoscale particles. Mathematical models, simulation work, and experimental studies using nanocrystals in the laboratory have suggested that self-assembled structures derived from nanoscale tetrahedral building blocks are notably intricate, giving rise to new horizons of high-entropy nanocrystal superlattices. An important implication from previous works is that such tetrahedral nanocrystal superlattices form through highly delicate interparticle interactions, emphasizing the importance of the fine features of these nanocrystals. In this article, we summarize the advances in superlattices assembled from tetrahedral nanocrystals. Here, we first define the tetrahedron and tetrahedron analogues based on Conway’s transformation and graph theory, underscoring their relevance to the crystallization process producing tetrahedral nanocrystals. Then, we showcase previous reports on the synthesis of tetrahedral nanocrystals and the resulting nanocrystal superstructures. Finally, we conclude by offering insights and perspective into the chemical and architectural intricacy that could emerge from tetrahedral nanocrystals.
We report on the observations of the quasar NRAO 530 with the Event Horizon Telescope (EHT) on 2017 April 5–7, when NRAO 530 was used as a calibrator for the EHT observations of Sagittarius A*. At z = 0.902, this is the most distant object imaged by the EHT so far. We reconstruct the first images of the source at 230 GHz, at an unprecedented angular resolution of ~20 μas, both in total intensity and in linear polarization (LP). We do not detect source variability, allowing us to represent the whole data set with static images. The images reveal a bright feature located on the southern end of the jet, which we associate with the core. The feature is linearly polarized, with a fractional polarization of ~5%–8%, and it has a substructure consisting of two components. Their observed brightness temperature suggests that the energy density of the jet is dominated by the magnetic field. The jet extends over 60 μas along a position angle ~ –28°. It includes two features with orthogonal directions of polarization (electric vector position angle), parallel and perpendicular to the jet axis, consistent with a helical structure of the magnetic field in the jet. The outermost feature has a particularly high degree of LP, suggestive of a nearly uniform magnetic field. Future EHT observations will probe the variability of the jet structure on microarcsecond scales, while simultaneous multiwavelength monitoring will provide insight into the high-energy emission origin.
Optical rotatory power measurement for compensated cholesteric liquid crystal helical structure to observe thermally induced inversion and electric field perturbations
Substantial quantities of the alternating polymers poly(U-G) and poly(C-A) have been prepared and used as templates for the self-condensation of ImpApC, ImpCpA, ImpGpU and ImpUpG. It is found that the condensation of ImpGpu and ImpUpG on poly(C-A) is efficient, the condensation of ImpCpA on poly(U-G) is moderately efficient, while the condensation of ImpApC on poly(U-C) proceeds poorly. In many cases, the product is predominantly 3'-5'-linked. These reactions demonstrate unequivocally, for the first time, that template-directed reactions occur in double-helical structures. Furthermore, they describe for the first time a pair of reactions in which each of two complementary polymers facilitates the synthesis of the other. The prebiotic significance of these findings is discussed.
Chemical mechanisms for the amplification of small, abiotically produced enantiomeric excesses leading to the complete stereo specificity of all biochemical reactions observed in the present-day biosphere are investigated quantitatively. Partial copolymerization of a mixture of R- and S-leucine or R- and S-valine N-carboxy anhydrides containing a known excess of one enantiomer was induced and the enantiomeric composition of the resulting oligomer was analyzed by gas chromatography. It is found that the 50% polymerization of leucine mixtures having excesses of 8 to 70% of either enantiomer leads to a significant enhancement of the enantiomeric excess of the polymer, accompanied by a corresponding decrease in the enantiomeric excess of the unpolymerized residue. On the other hand, 25-50% polymerization of valine mixtures is observed to result in polymers showing a decreased enantiomeric excess relative to the starting mixture and corresponding increases in those of the residue. Results of the leucine polymerization are interpreted as supporting the theory of steric interactions between the monomer and the helical structure of the polymer leading to the enrichment of one enantiomer, and possible mechanisms for the reverse stereospecificity observed in valine are discussed.
This paper presents an analytic model for a finite-size straight filament suspended horizontally in a steady state over a bipolar magnetic region. The equations of magnetostatic equilibrium are integrated exactly. The solution obtained illustrates the roles played by the electric current, magnetic field, pressure, and plasma weight in the balance of force everywhere in space. A specific example of a filament of diameter 50,000 km, with a density two orders of magnitude over the corona and supported by a magnetic field of about 4 gauss is included. The filament temperature can take values ranging from a small fraction to a few times the coronal temperature, depending on the internal electric current of the filament. To produce a cool filament, such as the quiescent prominence, the solution is required to have an internal field with a strong component along the filament, giving rise to helical structures. A hot filament such as the X-ray coronal loop can be produced as a twisted magnetic flux tube embedded in a strong background field aligned parallel to the filament and having lower density and temperature. The basic steps of construction can be used to develop models more realistic than the ones presented for their analytic simplicity.
The interaction of the solar wind and the earth's magnetosphere is presently simulated by a 3D, time-dependent, global MHD method in order to model the magnetopause and magnetotail generation of magnetic flux ropes. It is noted that strongly twisted and localized magnetic flux tubes simular to magnetic flux ropes appear at the subpolar magnetopause when the IMF has a large azimuthal component, as well as a southward component. Plasmoids are generated in the magnetotail after the formation of a near-earth magnetic neutral line; the magnetic field lines have a helical structure that is connected from dawn to dusk.
Finite-difference second-order accurate direct simulation of a turbulent pipe has been used to investigate how the turbulence production and dissipation change when a solid body rotation is applied. It is shown that when the helicity increases, the dissipation is reduced. It is asserted that to have a drag reduction the external action should be such as to disrupt the symmetry of right- and left-handed helical structures. In this study the Navier-Stokes equations in rotational form permit the turbulent energy production to be split into a part related to the energy cascade from large to small scales and into a part related to the convection by large scales. The full simulation data have shown the latter is greater than the former in the wall region and that, on the contrary, these two terms balance each other in the central region. From the pdf of the former, it has been shown how the vortical structures are changed in the wall region by the background radiation and how they are related to the changes in the energy production.
We have postulated that, in the case of tetragonal chicken egg white lysozyme, crystal growth occurs by the addition of pre-critical nuclei sized n-mers that form in the bulk solution, and that the n-mer growth units were multiples of the tetrameric 4(sub 3) helical structure. These have the strongest intermolecular bonds in the crystal and are therefore likely to be the first species formed. High resolution AFM studies provide strong supporting evidence for this model, but the data also suggest that the actual species in solution may not be identical in structure to that found in the crystal. We are using fluorescence resonance energy transfer (FRET) to study the initial solution phase self-assembly process, using covalent fluorescent derivatives which crystallize in the characteristic P4(sub 3)2(sub 1)2(sub 1) space group. FRET studies are being carried out between the cascade blue (CB-lys, donor, Ex(sub max) 366 nm, Em 420 nm) and lucifer yellow (LY-lys, acceptor, Ex(sub max) 430 nm, Em 528 nm) asp101 derivatives. The estimated R(sub 0) for this probe pair, the distance where 50% of the donor energy is transferred to the acceptor, is approx. 1.2 nm, compared to 2.2 nm between the side chain carboxyls of adjacent asp101's in the crystalline 4(sub 3) helix. The short donor lifetime of 2.80 ns (chi(sup 2) = 0.644), coupled with the large average distances between the molecules (greater than or equal to 50 nm) in solution, ensure that any energy transfer observed is not due to random diffusive interactions. Lifetime data show that CB-lys has a single lifetime when it is the only species in solution. Similarly, LY-lys also exhibits a single lifetime of 4.63 ns (chi(sup 2) = 0.42) when alone in solution. Addition of LY-lys to CB-lys results in the appearance of a third lifetime component of 0.348ns for the CB-lys. The fractional intensities of the different species present can be used to estimate the distribution of monomer and n-mers in solution. The self-association process is a function of the protein concentration relative to the saturation concentration, and observing it in dilute solution (conc. less than or equal to 10(exp -5)M) requires that the experiments be performed under low solubility conditions, i.e., low temperatures and high salt concentrations. Data from preliminary steady state FRET studies with N-terminal bound pyrene acetic acid (PAA-lys, donor, Ex 340 nm, Em 376 nm) and asp101 LY-lys as an acceptor showed a consistent trend of decreasing donor fluorescence intensity with increasing total protein concentration. The FRET data have been obtained at pH 4.6, 0.1M NaAc buffer, at 5 and 7% NaCl, 4 C. The corresponding C(sub sat) values are 0.471 and 0.362 mg/ml (approx. 3.3 and approx. 2.5 x 10(exp -5)M respectively). The donor fluorescence decrease is more pronounced at7% NaCl, consistent with the expected increased intermolecular interactions at higher salt concentrations as reflected in the lower solubility. Results from these and other ongoing studies will be discussed in conjunction with an emerging model for how tetragonal lysozyme crystals nucleate and the relevance of that model to other proteins.
Peptide nucleic acids (PNAs) are uncharged analogs of DNA and RNA in which the ribose-phosphate backbone is substituted by a backbone held together by amide bonds. PNAs are interesting as models of alternative genetic systems because they form potentially informational base paired helical structures. A PNA C10 oligomer has been shown to act as template for efficient formation of oligoguanylates from activated guanosine ribonucleotides. In a previous paper we used heterosequences of DNA as templates in sequence-dependent polymerization of PNA dimers. In this paper we show that information can be transferred from PNA to RNA. We describe the reactions of activated mononucleotides on heterosequences of PNA. Adenylic, cytidylic and guanylic acids were incorporated into the products opposite their complement on PNA, although less efficiently than on DNA templates.
Peptide nucleic acids (PNAs) are analogs of nucleic acids in which the ribose-phosphate backbone is replaced by a backbone held together by amide bonds. PNAs are interesting as models of alternative genetic systems because they form potentially informational base paired helical structures. Oligocytidylates have been shown to act as templates for formation of longer oligomers of G from PNA G2 dimers. In this paper we show that information can be transferred from DNA to PNA. DNA C4T2C4 is an efficient template for synthesis of PNA G4A2G4 using G2 and A2 units as substrates. The corresponding synthesis of PNA G4C2G4 on DNA C4G2C4 is less efficient. Incorporation of PNA T2 into PNA products on DNA C4A2C4 is the least efficient of the three reactions. These results, obtained using PNA dimers as substrates, parallel those obtained using monomeric activated nucleotides.
An extensive literature review of magnetic nozzle research has been performed, examining previous work, as well as a review of fundamental principles. This has allow us to catalog all basic physical mechanisms which we believe underlie the thrust generation process. Energy conversion mechanisms include the approximate conservation of the magnetic moment adiabatic invariant, generalized hall and thermoelectric acceleration, swirl acceleration, thermal energy transformation into directed kinetic energy, and Joule heating. Momentum transfer results from the interaction of the applied magnetic field with currents induced in the plasma plume., while plasma detachment mechanisms include resistive diffusion, recombination and charge exchange collisions, magnetic reconnection, loss of adiabaticity, inertial forces, current closure, and self-field detachment. We have performed a preliminary study of Hall effects on magnetic nozzle jets with weak guiding magnetic fields and weak expansions (p(sub jet) approx. = P(sub background)). The conclusion from this study is that the Hall effect creates an azimuthal rotation of the plasma jet and, more generally, creates helical structures in the induced current, velocity field, and magnetic fields. We have studied plasma jet expansion to near vacuum without a guiding magnetic field, and are presently including a guiding magnetic field using a resistive MHD solver. This research is progressing toward the implementation of a full generalized Ohm's law solver. In our paper, we will summarize the basic principle, as well as the literature survey and briefly review our previous results. Our most recent results at the time of submittal will also be included. Efforts are currently underway to construct an experiment at the University of Michigan Plasmadynamics and Electric Propulsion Laboratory (PEPL) to study magnetic nozzle physics for a RF-thruster. Our computational study will work directly with this experiment to validate the numerical model, in order to study magnetic nozzle physics and optimize magnetic nozzle design. Preliminary results from the PEPL experiment will also be presented.