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At least 73 records · Page 4

Open Source Next Generation Visualization Software for Interplanetary Missions

Mission control is evolving quickly, driven by the requirements of new missions, and enabled by modern computing capabilities. Distributed operations, access to data anywhere, data visualization for spacecraft analysis that spans multiple data sources, flexible reconfiguration to support multiple missions, and operator use cases, are driving the need for new capabilities. NASA's Advanced Multi-Mission Operations System (AMMOS), Ames Research Center (ARC) and the Jet Propulsion Laboratory (JPL) are collaborating to build a new generation of mission operations software for visualization, to enable mission control anywhere, on the desktop, tablet and phone. The software is built on an open source platform that is open for contributions (http://nasa.github.io/openmct).

software engineering

Optimizing a Small RNAseq Analysis Pipeline for NASA GeneLab Using Open-Source Tools and Libraries

Small RNA sequencing (small RNAseq) is a powerful tool for studying the regulation of gene expression in various organisms. Small RNAseq has been leveraged in space biology research to study how expression of small RNAs, e.g. micro RNAs (miRNAs), small interfering RNAs (siRNAs), and piwi-interacting RNAs (piRNAs), change upon exposure to the space environment. NASA GeneLab currently hosts small RNAseq raw data derived from space-relevant experiments on the Open Science Data Repository (OSDR). To maximize the accessibility of these data to the scientific community, in addition to hosting raw data, which is only interpretable by bioinformaticians, GeneLab plans to process all small RNAseq datasets and make those processed data available to the scientific community via the OSDR. In this study, we present the development of the GeneLab standardized pipeline for processing small RNAseq datasets. Using human, plant, and synthetic small RNAseq datasets, we interrogate various open-source software and publicly available databases to evaluate their accuracy and reproducibility in each step of the pipeline. For quality control and adapter detection and trimming, we evaluated TrimGalore!, FASTX, SeqKit, and DNApi methods to optimize alignment to reference genomes. We compared BWA, Bowtie, and Bowtie2 to determine the optimal alignment tool. For each alignment tool we also assessed various reference databases, including Ensembl reference genomes and different types of small RNA reference databases, including genome, hairpin, and miRNA references from the miRbase and MirGeneDB databases. To quantify the aligned data, we compared SAMtools, HTSeq, and RSEM for counting alignment events from each alignment tool used. Finally, we evaluated various tools, including DESeq2 and EdgeR, for data normalization and subsequent differential expression analysis. We will present the results from our comparative analyses for each pipeline step and propose a consensus pipeline for processing small RNAseq data derived from various organisms exposed to the space environment.

SmallRNAseq, NASA GeneLab, quality control, adapte

DELTA: An Open-Source Framework to Simplify Deep Learning with Satellite Imagery

DELTA (Deep Earth Learning, Tools, and Analysis) is an open-source framework developed at NASA for deep learning on satellite imagery based on tensorflow. It helps simplify data engineering and preprocessing steps and reduces the need for a lot of the boilerplate code that needs written to make datasets palatable for machine learning. This lets data scientists focus on model development while DELTA handles the grunt work. This presentation will demonstrate DELTA’s functionality and share some examples from an active project using it for flood mapping.

Michael von Pohle

DELTA: An Open-Source Framework to Simplify Machine Learning with Satellite Imagery

DELTA (Deep Earth Learning, Tools, and Analysis) is an open-source framework developed at NASA to simplify running and training machine learning (ML) models on satellite imagery. Users new to machine learning can run existing ML models on satellite imagery with minimal setup and configuration. For experienced ML users, DELTA helps simplify data engineering, preprocessing steps, and reduces the need for boilerplate code that needs written to make satellite imagery datasets palatable for machine learning. This lets data scientists focus on model development while DELTA handles the imagery manipulation. This presentation will demonstrate DELTA’s functionality and share some examples from an active project using it for flood mapping using imagery from multiple satellite sources

Michael von Pohle

DELTA: An Open-Source Framework to Simplify Machine Learning with Satellite Imagery

DELTA (Deep Earth Learning, Tools, and Analysis) is an open-source framework developed at NASA to simplify running and training machine learning (ML) models on satellite imagery. Users new to machine learning can run existing ML models on satellite imagery with minimal setup and configuration. For experienced ML users, DELTA helps simplify data engineering, preprocessing steps, and reduces the need for boilerplate code that needs written to make satellite imagery datasets palatable for machine learning. This lets data scientists focus on model development while DELTA handles the imagery manipulation. This presentation will demonstrate DELTA’s functionality and share some examples from an active project using it for flood mapping using imagery from multiple satellite sources.

deep learning

Integration of MAC/GMC into CalculiX, an Open Source Finite Element Code

An analysis framework is presented that makes available multiscale analysis of composite structures using the open-source FEA solver package CalculiX CrunchiX (CCX). At the center of this framework is the coupling of the Finite Element Analysis - Micromechanics Analysis Code (FEAMAC) library from NASA's Micromechanics Analysis Code with Generalized Method of Cells (MAC/GMC) to allow micromechanics analysis. The results show that the proposed coupling can be used with appropriate care for multiscale FEA simulations of composite materials. The largest error reported in this validation was in a four-point bend test specimen with an error of less than 1% difference in the maximum deflection of the beam.

Yapor Genao, Francisco A.

Open-Source Software for Modeling of Nanoelectronic Devices

The Nanoelectronic Modeling 3-D (NEMO 3-D) computer program has been upgraded to open-source status through elimination of license-restricted components. The present version functions equivalently to the version reported in "Software for Numerical Modeling of Nanoelectronic Devices" (NPO-30520), NASA Tech Briefs, Vol. 27, No. 11 (November 2003), page 37. To recapitulate: NEMO 3-D performs numerical modeling of the electronic transport and structural properties of a semiconductor device that has overall dimensions of the order of tens of nanometers. The underlying mathematical model represents the quantum-mechanical behavior of the device resolved to the atomistic level of granularity. NEMO 3-D solves the applicable quantum matrix equation on a Beowulf-class cluster computer by use of a parallel-processing matrix vector multiplication algorithm coupled to a Lanczos and/or Rayleigh-Ritz algorithm that solves for eigenvalues. A prior upgrade of NEMO 3-D incorporated a capability for a strain treatment, parameterized for bulk material properties of GaAs and InAs, for two tight-binding submodels. NEMO 3-D has been demonstrated in atomistic analyses of effects of disorder in alloys and, in particular, in bulk In(x)Ga(1-x)As and in In(0.6)Ga(0.4)As quantum dots.

Oyafuso, Fabiano

Open Source Mission Control for Chrome

New technology presents the possibility to evolve mission control. WARP (Web Applications for Resource Prospector) a new open source toolset for mission visualization, brings mission control to the Chrome Web Browser. WARP integrates multiple data sources into a coherent visualization toolset from which users may assemble their own software, thus giving mission controllers more flexibility. This frees us to operate based on mission needs, rather than constraints enforced by software application boundaries.

software engineering

The Mars Ingenuity Helicopter – A Victory for Open-Source Software

The Ingenuity Mars Helicopter completed a highly successful demonstration of powered flight and scouting on the surface of Mars. F Prime, JPL's open-source flight software framework, contributed to that success. This paper will detail the architecture of the flight software and the application of this framework to the Mars Helicopter mission.

Canham, Timothy K

Open-Source Data Engineering at NASA: CCMC's Approach to Managing Petabyte-Scale Heliophysics Data

The Community Coordinated Modeling Center (CCMC) at NASA Goddard Space Flight Center (GSFC) leads heliophysics research by providing open access to numerous models and their outputs. Our resources are available on-demand and continuously updated with real-time data, covering sun-earth interactions across multiple domains. These domains include coronal, heliosphere, inner and global magnetosphere, ionosphere, thermosphere, and lower atmosphere interactions. Operating in a hybrid environment, CCMC utilizes both self-owned hardware and Amazon Web Services (AWS) cloud infrastructure. Managing petabytes of data across multiple locations necessitates robust data engineering solutions. To address this challenge, CCMC has adopted industry-standard and open-source tools. We use Apache Airflow as our primary data engineering platform, Python for scripting and data processing, and GitLab for version control and CI/CD. Additionally, we employ Kubernetes for containerized services, Grafana and Prometheus for metrics and monitoring, and Terraform and Puppet for reproducible infrastructure as code. This presentation will discuss lessons learned from our data engineering experiences, platforms evaluated but found unsuitable for our scientific data requirements, and specific techniques developed to enhance data transfer speed and reliability. By using these technologies effectively, CCMC continues to advance heliophysics research through efficient data management and open-access modeling.

space weather

Aviary: Open-Source Software Tool for Optimizing Next-Generation Aircraft Designs

Existing aircraft design tools are limited in their ability to provide meaningful trends for hybrid-electric & all-electric aircraft. Aviary is an open-source software tool that modernizes legacy design tools and enables multidisciplinary analysis and optimization of unconventional vehicles like X-66A. Aviary has the potential to revolutionize aircraft analysis by making aircraft conceptual designs more efficient.

Jennifer Gratz

Open-source Techniques for Automated Landslide Inventory Generation for Rapid Response

Manual mapping is the most used method for generating landslide inventories. For rapid response scenario this method becomes tedious and time consuming. The Landslide team at NASA Goddard Space Flight Center has been developing open-source landslide mapping systems for rapid generation of landslide inventories. We have developed a Python-based landslide mapping framework known as the Semi-Automatic Landslide Detection (SALaD) system that uses Object-based Image Analysis and machine learning. For production of event-based inventories, SALaD was modified to include a change detection module (SALaD-CD). Utilizing high-resolution imagery form from Planet and Maxar, we have generated multiple rapid response landslide inventories that have been used by emergency responders on the ground, the NASA Disasters program, and academia. Currently, we are exploiting deep learning frameworks for landslide mapping. We are interested to learn about efficient way to harmonize multi-sensor data for creating a long-term record of landslides, training strategies and ongoing deep learning-based efforts for natural hazard characterization within NASA and UMD.

Pukar Amatya

COTS Camera and Computer-based Open-source Star Tracker

The NASA Johnson Space Center (JSC) and other partners have developed and verified a software suite intended to allow users with little-to-no experience with star trackers/attitude estimation to assemble, deploy, calibrate, and operate a star tracker using COTS cameras and computers. This software is open source, written in Python 3, and has been demonstrated across a variety of computers, operating systems, and cameras. The first release of the software is now available to download at the link below. We’re excited to see what you do with it! Please contact us for more information.

Samuel M. Pedrotty

An Open-Source Numerical Model for Mitigating Refractory Alloy Hot Cracking Susceptibility

Refractory alloys are susceptible to solidification cracking during welding and 3D printing. Composition control is an effective method of controlling solidification cracking. This work evaluates the effect of compositional variation in refractory metal systems on a computed solidification cracking susceptibility. A numerical model has been developed using Python code and open-source CALPHAD software to calculate Kou’s crack susceptibility index. The model is validated against past weldability studies performed on several refractory alloy systems. The approach is extended towards the development of new alloys with improved 3D printability and weldability and is shown to have utility in defining compositional limits for existing alloys and feedstocks. Furthermore, the model will aid in determining process controls for powder reuse and recycling.

pycalphad

Transcriptomics Processing Pipelines for Space Biology: An Open Source and Consensus-Driven Approach

Transcriptomics holds significant value in elucidating the relationship between gene expression, experimental factors, biological factors, and various types of omics data. Enhancing our understanding of these connections is paramount for foundational biology, which plays a pivotal role in devising solutions for challenges pertinent to both space travel and terrestrial life. The NASA GeneLab project, part of the Open Science Data Repository (OSDR.nasa.gov), seeks to accelerate space biology research through cataloging and democratizing ‘omics data, including transcriptomics. Since raw omics data are largely inaccessible to non-bioinformaticians, GeneLab works with the scientific community via the Open Science Analysis Working Groups (AWGs) to develop standard processing pipelines to generate and publish processed data. Unlike raw data, processed data have greater immediate value to diverse users with varying technical backgrounds and computational capabilities. Standardizing processing workflows is essential to match the pace of raw data generation, ensure reproducibility, and enable standardized processed data for comparison across datasets. As of June 2023, transcriptomics studies comprise over half of GeneLab datasets hosted on the OSDR, including data from bulk RNA-seq and Affymetrix or Agilent 1-Channel DNA microarray assays. In collaboration with the AWGs, GeneLab developed consensus processing pipelines for these transcriptomics data types that includes quality control, background correction (microarray only), data normalization and quantification, culminating in the detection and annotation of differentially expressed genes. The work presented here describes Nextflow implementations of GeneLab’s consensus transcriptomics pipelines that automates and accelerates processing of these datasets. In addition to the core data processing, these workflows also include raw data staging and a robust verification and validation program to identify errors in real-time, stop additional downstream computation, and preserve computational resources. These workflows are used to generate GeneLab processed data hosted on the OSDR, and are publicly available as open source software for others to use at: https://github.com/nasa/GeneLab_Data_Processing.

Jonathan Oribello

Design and Performance of an Open-Source Star Tracker Algorithm on Commercial Off-The-Shelf Cameras and Computers

Recent frustration in finding low size, weight, power (SWaP), cost, and lead time star trackers has driven an internal research and development effort at Johnson Space Center (JSC) in partnership with Rensselaer Polytechnic Institute (RPI) to develop and demonstrate a commercial off-the-shelf (COTS) camera and COTS computer-based star tracker system. A set of open-source algorithms has been developed and their function demonstrated on multiple low-cost COTS single board computers (SBCs) across a variety of operating systems and COTS cameras. The goal of this effort is to release the software and setup guide to the community in order to reduce spacecraft development costs while increasing their capability (perhaps most of interest to low-cost missions like CubeSats). This material will show the high level architecture of the system, detail the algorithm, various tested configurations, and results. Forward work and applications will also be discussed.

Pedrotty, Samuel

Design and Performance of an Open-Source Star Tracker Algorithm on Commercial Off-the-Shelf Cameras and Computers

Recent frustration in finding low size, weight, power (SWaP), cost, and lead time star trackers has driven an internal research and development effort at Johnson Space Center (JSC) in partnership with Rensselaer Polytechnic Institute (RPI) to develop and demonstrate a commercial off-the-shelf (COTS) camera and COTS computer-based star tracker system. A set of open-source algorithms has been developed and their function demonstrated on multiple low-cost COTS single board computers (SBCs) across a variety of operating systems and COTS cameras. The goal of this effort is to release the software and setup guide to the community in order to reduce spacecraft development costs while increasing their capability (perhaps most of interest to low-cost missions like CubeSats). This material will show the high level architecture of the system, detail the algo-rithm, various tested configurations, and results. Forward work and applications will also be discussed.

Pedrotty, Samuel