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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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DANTi: A Tool for Assistive Detect and Avoid Research

This paper presents DANTi, a research tool developed at NASA Langley Research Center to support the validation of Assistive Detect and Avoid (ADAA) requirements for General Aviation (GA). ADAA is a future on-board aircraft technology intended to augment a pilot’s see-and-avoid capability by helping them identify and resolve traffic conflicts earlier and more efficiently. DANTi includes a realistic Electronic Flight Bag (EFB) display and a fast-time simulation environment that can be fully customized to meet different research requirements. DANTi is currently used within NASA efforts such as the Air Mobility Pathfinders project on future air transportation systems and a joint NASA/FAA Laboratory Integrated Test Environment (NFLITE) on next-generation airspace operations in urban environments. These efforts investigate ADAA requirements in advanced urban air mobility settings where new aircraft types, new services, and new traffic patterns will be integrated in an overall crowded airspace.

Detect and Avoid↗
NASA NTRS2008

Luciola Hypertelescope Space Observatory

Luciola is a large (one kilometer) "multi-aperture densified-pupil imaging interferometer", or "hypertelescope" employing many small apertures, rather than a few large ones, for obtaining direct snapshot images with a high information content. A diluted collector mirror, deployed in space as a flotilla of small mirrors, focuses a sky image which is exploited by several beam-combiner spaceships. Each contains a pupil densifier micro-lens array to avoid the diffractive spread and image attenuation caused by the small sub-apertures. The elucidation of hypertelescope imaging properties during the last decade has shown that many small apertures tend to be far more efficient, regarding the science yield, than a few large ones providing a comparable collecting area. For similar underlying physical reasons, radio-astronomy has also evolved in the direction of many-antenna systems such as the proposed Low Frequency Array having hundreds of thousands of individual receivers . With its high limiting magnitude, reaching the mv=30 limit of HST when 100 collectors of 25cm will match its collecting area, high-resolution direct imaging in multiple channels, broad spectral coverage from the 1200 Angstrom ultra-violet to the 20 micron infra-red, apodization, coronagraphic and spectroscopic capabilities, the proposed hypertelescope observatory addresses very broad and innovative science covering different areas of ESA s Cosmic Vision program. In the initial phase, a focal spacecraft covering the UV to near IR spectral range of EMCCD photon-counting cameras ( currently 200 to 1000nm), will image details on the surface of many stars, as well as their environment, including multiple stars and clusters. Spectra will be obtained for each resel. It will also image neutron star, black-hole and micro-quasar candidates, as well as active galactic nuclei, quasars, gravitational lenses, and other Cosmic Vision targets observable with the initial modest crowding limit. With subsequent upgrade missions, the spectral coverage can be extended from 120nm to 20 microns, using four detectors carried by two to four focal spacecraft. The number of collector mirrors in the flotilla can also be increased from 12 to 100 and possibly 1,000. The imaging and spectroscopy of habitable exoplanets in the mid infra-red then becomes feasible once the collecting area reaches 6m2 , using a specialized mid infra-red focal spacecraft. Calculations ( Boccaletti et al., 2000) have shown that hypertelescope coronagraphy has unequalled sensitivity for detecting, at mid infra-red wavelengths, faint exoplanets within the exo-zodiacal glare. Later upgrades will enable the more difficult imaging and spectroscopy of these faint objects at visible wavelengths, using refined techniques of adaptive coronagraphy (Labeyrie. & Le Coroller, 2004). Together, the infra-red and visible spectral data carry rich information on the possible presence of life. The close environment of the central black-hole in the Milky Way will be imageable with unprecedented detail in the near infra-red . Cosmological imaging of remote galaxies at the limit of the known universe is also expected, from the ultra-violet to the near infra-red, following the first upgrade, and with greatly increasing sensitivity through successive upgrades. These areas will indeed greatly benefit from the upgrades, in terms of dynamic range, limiting complexity of the objects to be imaged, size of the elementary Direct Imaging Field , and limiting magnitude, approaching that of an 8-meter space telescope when 1000 apertures of 25cm are installed. Similar gains will occur for addressing fundamental problems in physics and cosmology, particularly when observing neutron stars and black holes, single or binary, including the giant black holes, with accretion disks and jets, in active galactic nuclei beyond the Milky Way. Gravitational lensing and micro-lensing patterns, including time-variable patterns and perhaps millisecond lensing flasheshich may be beamed by diffraction from sub-stellar masses at sub-parsec distances (Labeyrie, 1994) , will also be observable initially in the favourable cases, and upgrades will greatly improve the number of observable objects. The observability of gravitational waves emitted by binary lensing masses, in the form of modulated lensing patterns, is a debated issue ( Ragazzoni et al., 2003) but will also become addressable observationally. The technology readiness of Luciola approaches levels where low-orbit testing and stepwise implementation will become feasible in the 2015-2025 time frame. For the following decades beyond 2020, once accurate formation flying techniques will be mastered, much larger hypertelescopes such as the proposed 100km Exo-Earth Imager and the 100,000 km Neutron Star Imager should also become feasible. Luciola is therefore also seen as a precursor toward such very powerful instruments.

Labeyrie, Antoine↗
NASA NTRS1994

Methodologies to determine forces on bones and muscles of body segments during exercise, employing compact sensors suitable for use in crowded space vehicles

A complete description of an instrumented ergometer system, including the sensors, the data acquisition system, and the methodologies to calculate the kinematic parameters were initially developed at Tulane University. This work was continued by the PI at NASA Johnson Space Center, where a flight ergometer was instrumented and tested during a KC-135 Zero-Gravity flight. The sensors that form part of the system include EMG probes and accelerometers mounted on the subject using the ergometer, load cells to measure pedal forces, and encoders to measure position and orientation of the pedal (foot). Currently, data from the flight test is being analyzed and processed to calculate the kinematic parameters of the individual. The formulation developed during the initial months of the grant will be used for this purpose. The system's components are compact (all sensors are very small). A salient feature of the system and associated methodology to determine the kinematics is that although it uses accelerometers, position is not determined by integration. Position is determined by determining the angle of two frames of reference for which acceleration at one point is known in coordinates of both frames.

Figueroa, Fernando↗
DOE OSTI2024

Current State, Challenges, and Opportunities in Genome-Scale Resource Allocation Models: A Mathematical Perspective

Stoichiometric genome-scale metabolic models (generally abbreviated GSM, GSMM, or GEM) have had many applications in exploring phenotypes and guiding metabolic engineering interventions. Nevertheless, these models and predictions thereof can become limited as they do not directly account for protein cost, enzyme kinetics, and cell surface or volume proteome limitations. Lack of such mechanistic detail could lead to overly optimistic predictions and engineered strains. Initial efforts to correct these deficiencies were by the application of precursor tools for GSMs, such as flux balance analysis with molecular crowding. In the past decade, several frameworks have been introduced to incorporate proteome-related limitations using a genome-scale stoichiometric model as the reconstruction basis, which herein are called resource allocation models (RAMs). This review provides a broad overview of representative or commonly used existing RAM frameworks. This review discusses increasingly complex models, beginning with stoichiometric models to precursor to RAM frameworks to existing RAM frameworks. RAM frameworks are broadly divided into two categories: coarse-grained and fine-grained, with different strengths and challenges. Discussion includes pinpointing their utility, data needs, highlighting framework strengths and limitations, and appropriateness to various research endeavors, largely through contrasting their mathematical frameworks. Finally, promising future applications of RAMs are discussed.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2016

Graphene in perovskite solar cells: device design, characterization and implementation

Conversion of light energy directly into electricity by solar cell devices represents one of the most promising options for highly scalable renewable power. Tremendous effort has been directed at improving photovoltaic (PV) conversion efficiencies, resulting in dramatic device performance increases over the past two decades for novel, cost-effective PV systems. Nevertheless, performance issues related to device stability, scalability, and flexibility prevent these novel designs from achieving their market potential. For mechanically flexible architectures, integration of new materials such as graphene-derived nanomaterials (i.e. graphene/graphite oxide and their modified analogs with other nanocarbons and carbon nanotubes) may be necessary to enhance alternatives to silicon-based PV systems. Among the diverse solar technologies, perovskite solar cells—most notably organometal halides—have stood out from the crowd with solar efficiencies over 20% and potential for highly scalable manufacturing. Here, we review the use of graphene and graphene-derived nanomaterials in new designs of perovskite solar cells associated with organic–inorganic metal halide perovskites utilized as light-harvesting layers, outlining design perspectives, device characterization, and performance. Recent efforts to clarify stability issues and efficiency control mechanisms are also briefly discussed, and we provide some perspective on the currently available literature and future research directions in the field.

Acik, Muge↗
NASA NTRS2015

Experimental Products Development Team (EPDT) Supporting New AWIPS : Capabilities - Part 2

In 2012, the Experimental Products Development Team (EPDT) was formed within NASA's Short-term Prediction Research and Transition (SPoRT) Center to create training for development of plug‐ins to extend the National Weather Service (NWS) Advanced Weather Interactive Processing System (AWIPS) version 2. The broader atmospheric science community had a need for AWIPS II development training being created at SPoRT and EPDT was expanded to include other groups who were looking for training. Since the expansion of the group occurred, EPDT has provided AWIPS II development training to over thirty participants spanning a wide variety of groups such as NWS Systems Engineering Center, NWS Meteorological Development Laboratory, and several NOAA Cooperative Institutes. Participants within EPDT solidify their learning experience through hands‐on learning and by participating in a "code-sprint" in which they troubleshoot existing and develop plug‐ins. The hands‐on learning workshop is instructor lead with participants completing exercises within the AWIPS II Development Environment. During the code sprints EPDT groups work on projects important to the community and have worked on various plug‐ins such as an RGB image recipe creation tool, and an mPing (crowd sourced precipitation type reporting system) ingest and display. EPDT has developed a well‐defined training regime which prepares participants to fully develop plug‐ins for the extendible AWIPS II architecture from ingest to the display of new data. SPoRT has hosted 2 learning workshops and 1 code sprint over the last two years, and continues to build and shape the EPDT group based on feedback from previous workshops. The presentation will provide an overview of EPDT current and future activities, and best practices developed within EPDT.

Burks, Jason E.↗
DOE OSTI2022

Design of a graphical user interface for few-shot machine learning classification of electron microscopy data

The recent growth in data generation by modern electron microscopes requires rapid, scalable, and flexible approaches to image segmentation and analysis. Few-shot machine learning, which can richly classify images from a handful of user-provided examples, is a promising route to high-throughput analysis. However, current command-line implementations of such approaches can be slow and unintuitive to use, lacking the real-time feedback necessary to perform effective classification. Here we report on the development of a Python-based graphical user interface that enables end users to easily conduct and visualize the output of few-shot learning models. This interface is portable and can be hosted locally or on the web, providing the opportunity to reproducibly conduct, share, and crowd-source few-shot analyses.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2023

Adroit Materials Final Scientific/Technical Report kV-class GaN-based Junction Barrier Schottky diodes using ion implantation

The primary aim of this research was to develop GaN-based Junction Barrier Schottky (JBS) diodes using an innovative ion implantation process previously established in ARPA-E funded projects. The central focus of our proposed technology revolves around selective area p-type doping, accomplished through the implantation of Mg ions. This approach builds upon our successes in the ARPA-E PNDIODES program, advancing towards commercial device integration. Selective area p-doping plays a pivotal role in realizing the next generation of GaN-based power devices, capable of significantly reducing the carbon footprint in the United States by several million tons. While ion implantation is a well-established technique for achieving selective area doping in SiC and Si materials, its feasibility in GaN had not been demonstrated until now. To fabricate high voltage GaN JBS diodes, we initially created thick n-type drift layers with high carrier concentrations ranging from 5×1015 cm-3 to 2×1016 cm-3 and very high mobilities. Subsequently, Mg ions were selectively implanted to form p-type islands within the n-type drift layer. To reduce electric field crowding at the edge of the diode and to achieve high breakdown voltage, junction edge termination (JTE) and floating field rings (FFRs) were formed using Mg implantation. A high temperature, high-pressure post-implantation annealing process was carried out to activate the implanted Mg ions. As a result, we were able to demonstrate GaN JBS diodes with a breakdown voltage of 915 V and an on-resistance of 0.6 mΩ·cm2. These diodes exhibited a forward bias current density of 1 kA/cm2 at 1.5 V. Subsequently, we achieved GaN JBS diodes with a remarkable breakdown voltage of 1900 V and an on-resistance of 1.9 mΩ·cm2, capable of sustaining a forward bias current density of 0.5 kA/cm2 at 1.5 V. Importantly, the ON and OFF state performance of these GaN JBS diodes surpassed that of Si and SiC-based power diodes reported in existing literature. Lastly, we successfully grew 60 μm thick GaN:Si layers using HVPE with a carrier concentration of approximately 3 to 5×1015 cm-3. Based on simulation and empirical data these devices represent 5 kV GaN JBS power diodes, leveraging the developed processes in this project.

36 MATERIALS SCIENCE↗
NASA NTRS2015

X-Band CubeSat Communication System Demonstration

Today's CubeSats mostly operate their communications at UHF- and S-band frequencies. UHF band is presently crowded, thus downlink communications are at lower data rates due to bandwidth limitations and are unreliable due to interference. This research presents an end-to-end robust, innovative, compact, efficient and low cost S-band uplink and X-band downlink CubeSat communication system demonstration between a balloon and a Near Earth Network (NEN) ground system. Since communication systems serve as umbilical cords for space missions, demonstration of this X-band communication system is critical for successfully supporting current and future CubeSat communication needs. This research has three main objectives. The first objective is to design, simulate, and test a CubeSat S- and X-band communication system. Satellite Tool Kit (STK) dynamic link budget calculations and HFSS Simulations and modeling results have been used to trade the merit of various designs for small satellite applications. S- and X-band antennas have been tested in the compact antenna test range at Goddard Space Flight Center (GSFC) to gather radiation pattern data. The second objective is simulate and test a CubeSat compatible X-band communication system at 12.5Mbps including S-band antennas, X-band antennas, Laboratory for Atmospheric and Space Physics (LASP) /GSFC transmitter and an S-band receiver from TRL-5 to TRL-8 by the end of this effort. Different X-band communication system components (antennas, diplexers, etc.) from GSFC, other NASA centers, universities, and private companies have been investigated and traded, and a complete component list for the communication system baseline has been developed by performing analytical and numerical analysis. This objective also includes running simulations and performing trades between different X-band antenna systems to optimize communication system performance. The final objective is to perform an end-to-end X-band CubeSat communication system demonstration between a balloon and/or a sounding rocket and a Near Earth Network (NEN) ground system. This paper presents CubeSat communication systems simulation results, analysis of X-band and S-band antennas and RF front-end components, transceiver design, analysis and optimization of space-to-ground communication performance, subsystem development, as well as the test results for an end-to-end X-band CubeSat communication system demonstration. The outcome of this work will be used to pave the way for next generation NEN-compatible X-band CubeSat communication systems to support higher data rates with more advanced modulation and forward error correction (FEC) coding schemes, and to support and attract new science missions at lower cost. It also includes an abbreviated concept of operations for CubeSat users to utilize the NEN, starting from first contact with NASA's communication network and continuing through on-orbit operations.

NEN↗
DOE OSTI2023

Crowd cluster data in the USA for analysis of human response to COVID-19 events and policies

We provide data on daily social contact intensity of clusters of people at different types of Points of Interest (POI) by zip code in Florida and California. This data is obtained by aggregating fine-scaled details of interactions of people at the spatial resolution of 10 m, which is then normalized as a social contact index. We also provide the distribution of cluster sizes and average time spent in a cluster by POI type. This data will help researchers perform fine-scaled, privacy-preserving analysis of human interaction patterns to understand the drivers of the COVID-19 epidemic spread and mitigation. Current mobility datasets either provide coarse-level metrics of social distancing, such as radius of gyration at the county or province level, or traffic at a finer scale, neither of which is a direct measure of contacts between people. We use anonymized, de-identified, and privacy-enhanced location-based services (LBS) data from opted-in cell phone apps, suitably reweighted to correct for geographic heterogeneities, and identify clusters of people at non-sensitive public areas to estimate fine-scaled contacts.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2019

Scalable and efficient learning from crowds with Gaussian processes

Over the last few years, multiply-annotated data has become a very popular source of information. Online platforms such as Amazon Mechanical Turk have revolutionized the labelling process needed for any classification task, sharing the effort between a number of annotators (instead of the classical single expert). This crowdsourcing approach has introduced new challenging problems, such as handling disagreements on the annotated samples or combining the unknown expertise of the annotators. Probabilistic methods, such as Gaussian Processes (GP), have proven successful to model this new crowdsourcing scenario. However, GPs do not scale up well with the training set size, which makes them prohibitive for medium-to-large datasets (beyond 10K training instances). This constitutes a serious limitation for current real-world applications. In this work, we introduce two scalable and efficient GP-based crowdsourcing methods that allow for processing previously-prohibitive datasets. The first one is an efficient and fast approximation to GP with squared exponential (SE) kernel. The second allows for learning a more flexible kernel at the expense of a heavier training (but still scalable to large datasets). Since the latter is not a GP-SE approximation, it can be also considered as a whole new scalable and efficient crowdsourcing method, useful for any dataset size. Both methods use Fourier features and variational inference, can predict the class of new samples, and estimate the expertise of the involved annotators. A complete experimentation compares them with state-of-the-art probabilistic approaches in synthetic and real crowdsourcing datasets of different sizes. Finally, they stand out as the best performing approach for large scale problems. Moreover, the second method is competitive with the current state-of-the-art for small datasets.

96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
DOE OSTI2024

NiGa 2 O 4 interfacial layers in NiO/Ga 2 O 3 heterojunction diodes at high temperature

NiO/Ga 2 O 3 heterojunction diodes have attracted attention for high-power applications, but their high temperature performance and reliability remain underexplored. Here, we report the time evolution of the electrical properties in the widely studied p-NiO/n-Ga 2 O 3 heterojunction diodes and formation of NiGa 2 O 4 interfacial layers at high temperatures. Results of our thermal cycling experiment show an initial leakage current increase which stabilizes after sustained thermal load, due to reactions at the NiO–Ga 2 O 3 interface. High-resolution TEM microstructure analysis of the devices after thermal cycling indicates that the NiO–Ga 2 O 3 interface forms a ternary compound at high temperatures, and thermodynamic calculations suggest the formation of the spinel NiGa 2 O 4 layer between NiO and Ga 2 O 3 . First-principles defect calculations find that NiGa 2 O 4 shows low p-type intrinsic doping and hence can serve to limit electric field crowding at the interface. Vertical NiO/ Ga 2 O 3 diodes with intentionally grown 5 nm thin spinel-type NiGa 2 O 4 interfacial layers show an excellent device ON/OFF ratio of >10 10 (± 3 V), V ON of ~1.9 V, and increased breakdown voltage of ~1.2 kV for an initial unoptimized 300 lm diameter device. These p–n heterojunction diodes are promising for high-voltage, high temperature applications.

30 DIRECT ENERGY CONVERSION↗
DOE OSTI2023

Sky subtraction in an era of low surface brightness astronomy

ABSTRACT The Vera C. Rubin Observatory Wide-Fast Deep sky survey will reach unprecedented surface brightness depths over tens of thousands of square degrees. Surface brightness photometry has traditionally been a challenge. Current algorithms which combine object detection with sky estimation systematically oversubtract the sky, biasing surface brightness measurements at the faint end and destroying or severely compromising low surface brightness light. While it has recently been shown that properly accounting for undetected faint galaxies and the wings of brighter objects can in principle recover a more accurate sky estimate, this has not yet been demonstrated in practice. Obtaining a consistent spatially smooth underlying sky estimate is particularly challenging in the presence of representative distributions of bright and faint objects. In this paper, we use simulations of crowded and uncrowded fields designed to mimic Hyper Suprime-Cam data to perform a series of tests on the accuracy of the recovered sky. Dependence on field density, galaxy type, and limiting flux for detection are all considered. Several photometry packages are utilized: source extractor, gnuastro, and the LSST science pipelines. Each is configured in various modes, and their performance at extreme low surface brightness analysed. We find that the combination of the source extractor software package with novel source model masking techniques consistently produce extremely faint output sky estimates, by up to an order of magnitude, as well as returning high fidelity output science catalogues.

Astronomy & Astrophysics↗
DOE OSTI2017

Graph Learning in Knowledge Bases

The amount of text data has been growing exponentially in recent years, giving rise to automatic information extraction methods that store text annotations in a database. The current state-of-theart structured prediction methods, however, are likely to contain errors and it’s important to be able to manage the overall uncertainty of the database. On the other hand, the advent of crowdsourcing has enabled humans to aid machine algorithms at scale. As part of this project we introduced pi-CASTLE , a system that optimizes and integrates human and machine computing as applied to a complex structured prediction problem involving conditional random fields (CRFs). We proposed strategies grounded in information theory to select a token subset, formulate questions for the crowd to label, and integrate these labelings back into the database using a method of constrained inference. On both a text segmentation task over academic citations and a named entity recognition task over tweets we showed an order of magnitude improvement in accuracy gain over baseline methods.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2014

Comparing the Predicted Neutron Yields and Radioactivities of Two Accelerators in Taiwan: 235-MeV Proton Cyclotron and 3-GeV Electron Synchrotron - Paper 27

Two major accelerator facilities in Taiwan are about to open. The first proton treatment center equipped with a 235 MeV proton cyclotron and four gantry rooms in Linkou Chang Gung Memorial Hospital is currently under beam commissioning and clinical trials are expected to start soon. In addition, the second light source facility, named Taiwan Photon Source (TPS), in National Synchrotron Radiation Research Center is now approaching its final assembly and will be ready for beam commissioning in this year. These two facilities mark significant milestones in accelerator development and application of Taiwan. Operation of these accelerators could potentially produce intense secondary neutrons and serious material activation. Both issues are crucial and must be carefully evaluated for the purpose of radiation safety, especially in a densely populated hospital or in a crowded user experimental floor. Monte Carlo simulations with evaluated cross sections or benchmarked nuclear models are considered as the most reliable method for accelerator shielding designs or related analyses. This study predicted and compared the magnitudes of potential neutron production and induced radioactivity due to the operation of these two accelerators. For conservative consideration, the primary particle energy and full beam output were assumed to hit a thick target for maximum radiation production. In order to ensure the quality of predictions, much effort has been devoted to associated benchmark calculations, targeting those bombardment experiments involving with the same particle types and similar beam energies and targets. (authors)

43 PARTICLE ACCELERATORS↗
DOE OSTI2020

Integrating Health and Energy Efficiency in Multi-Family Buildings

The intersection between health and the built environment has long been known. Since the 18 th century, public health officials have been targeting building issues, such as crowding, poor sanitation, and inadequate ventilation in efforts to reduce infectious diseases and fire hazards. More recently, federal agencies, such as the U.S. Environmental Protection Agency (EPA), the Centers for Disease Control and Prevention, HUD, and the DOE have been working to reduce or eliminate indoor building factors that are known to have adverse health impacts on Americans, including reducing lead in housing and indoor air pollution that causes respiratory disease, and ensuring access to adequate heating, cooling, and moisture control. PNNL, in support of FEMP’s HBI, undertook a review of literature and existing best practices to identify current activities and research on the intersection between traditional energy-efficiency measures and occupant health within multi-family buildings. While the HBI methodology has focused on traditional office building spaces, it is now expanding into additional building use types. This overview explores some of the most impactful resources to help property owners and managers understand more about multi-family residential buildings that are both healthy and energy efficient. The federal government provides direct oversight and operation across several types of multi-family residential housing, including dormitories, barracks, and senior community living centers.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2019

Computational Modeling of Realistic Cell Membranes

Cell membranes contain a large variety of lipid types and are crowded with proteins, endowing them with the plasticity needed to fulfill their key roles in cell functioning. The compositional complexity of cellular membranes gives rise to a heterogeneous lateral organization, which is still poorly understood. Computational models, in particular molecular dynamics simulations and related techniques, have provided important insight into the organizational principles of cell membranes over the past decades. Now, we are witnessing a transition from simulations of simpler membrane models to multicomponent systems, culminating in realistic models of an increasing variety of cell types and organelles. Here, we review the state of the art in the field of realistic membrane simulations and discuss the current limitations and challenges ahead.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

ChemPix: automated recognition of hand-drawn hydrocarbon structures using deep learning

Inputting molecules into chemistry software, such as quantum chemistry packages, currently requires domain expertise, expensive software and/or cumbersome procedures. Leveraging recent breakthroughs in machine learning, we develop ChemPix: an offline, hand-drawn hydrocarbon structure recognition tool designed to remove these barriers. A neural image captioning approach consisting of a convolutional neural network (CNN) encoder and a long short-term memory (LSTM) decoder learned a mapping from photographs of hand-drawn hydrocarbon structures to machine-readable SMILES representations. We generated a large auxiliary training dataset, based on RDKit molecular images, by combining image augmentation, image degradation and background addition. Additionally, a small dataset of ~600 hand-drawn hydrocarbon chemical structures was crowd-sourced using a phone web application. These datasets were used to train the image-to-SMILES neural network with the goal of maximizing the hand-drawn hydrocarbon recognition accuracy. By forming a committee of the trained neural networks where each network casts one vote for the predicted molecule, we achieved a nearly 10 percentage point improvement of the molecule recognition accuracy and were able to assign a confidence value for the prediction based on the number of agreeing votes. The ensemble model achieved an accuracy of 76% on hand-drawn hydrocarbons, increasing to 86% if the top 3 predictions were considered.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗