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At least 73 records · Page 4

Closed-Form Approximation of the Total Variation Proximal Operator

Total variation (TV) is a widely used function for regularizing imaging inverse problems that is particularly appropriate for images whose underlying structure is piecewise constant. TV regularized optimization problems are typically solved using proximal methods, but the way in which they are applied is constrained by the absence of a closed-form expression for the proximal operator of the TV function. A closed-form approximation of the TV proximal operator has previously been proposed, but its accuracy was not theoretically explored in detail. Here, we address this gap by making several new theoretical contributions, proving that the approximation leads to a proximal operator of some convex function, it is equivalent to a gradient descent step on a smoothed version of TV, and that its error can be fully characterized and controlled with its scaling parameter. We experimentally validate our theoretical results on image denoising and sparse-view computed tomography (CT) image reconstruction.

97 MATHEMATICS AND COMPUTING↗

Spatial Resolution of a microCT Scanner

We have measured the spatial resolution of the 450 kV test-bed microCT scanner. We have also modeled the resolution analytically. The model and measurement show correspondence within 5%. Our measurement method was to use a thin tungsten wire to act as an impulse function. Therefore, the image is the impulse response, also called the point spread function (PSF) of the system. The Fourier transform (FT) of the impulse response is the modulation transfer function (MTF) of the system. We report the MTF here. By moving the wire at different positions in the scan field of view (FOV), we can measure MTF at different positions in the FOV. Since our imaging system is radially symmetric, we report MTF in two directions, radial and tangential as shown in Figure 1. The radial direction is along the line from isocenter to the wire, and the tangential is perpendicular to it.

42 ENGINEERING↗

Deep Multimodal Networks for M-type Star Classification with Paired Spectrum and Photometric Image

Abstract Traditional stellar classification methods include spectral and photometric classification separately. Although satisfactory results can be achieved, the accuracy could be improved. In this paper, we pioneer a novel approach to deeply fuse the spectra and photometric images of the sources in an advanced multimodal network to enhance the model’s discriminatory ability. We use Transformer as the fusion module and apply a spectrum–image contrastive loss function to enhance the consistency of the spectrum and photometric image of the same source in two different feature spaces. We perform M-type stellar subtype classification on two data sets with high and low signal-to-noise ratio (S/N) spectra and corresponding photometric images, and the F1-score achieves 95.65% and 90.84%, respectively. In our experiments, we prove that our model effectively utilizes the information from photometric images and is more accurate than advanced spectrum and photometric image classifiers. Our contributions can be summarized as follows: (1) We propose an innovative idea for stellar classification that allows the model to simultaneously consider information from spectra and photometric images. (2) We discover the challenge of fusing low-S/N spectra and photometric images in the Transformer and provide a solution. (3) The effectiveness of Transformer for spectral classification is discussed for the first time and will inspire more Transformer-based spectral classification models.

Astronomy & Astrophysics↗

Global brain activity and its coupling with cerebrospinal fluid flow is related to tau pathology

Abstract INTRODUCTION Factors responsible for the deposition of pathological tau in the brain are incompletely understood. This study links macroscale tau deposition in the human brain to cerebrospinal fluid (CSF) flow dynamics using resting‐state functional magnetic resonance imaging (rsfMRI). METHODS Low‐frequency (< 0.1 Hz) resting‐state global brain activity is coupled with CSF flow and potentially reflects CSF dynamics‐related clearance. We examined the correlation between rsfMRI measures of CSF inflow and global activity (gBOLD–CSF coupling) as a predictor, interacting with amyloid beta (Aβ), of tau and cortical thickness (dependent variables) across Alzheimer's Disease Neuroimaging Initiative (ADNI) participants from cognitively unimpaired through mild cognitive impairment (MCI) and Alzheimer's disease (AD). RESULTS Tau deposition in Aβ+ participants, accompanied by cortical thinning and cognitive decline, is associated with decreased gBOLD–CSF coupling. Tau mediates the relationship between coupling and thickness. DISCUSSION Findings suggest that resting‐state global brain activity and CSF movements comodulate Alzheimer's tau deposition, presumably related to CSF clearance. Highlights A non‐invasive functional magnetic resonance imaging (fMRI) assessment of a CSF clearance‐related process is carried out. Global brain activity is coupled with CSF inflow in human fMRI during resting state. Global fMRI–CSF coupling is correlated with tau in Alzheimer's disease (AD). This coupling measure is also associated with cortical thickness, mediated by tau.

Neurosciences & Neurology↗

Super-resolution imaging reveals resistance to mass transfer in functionalized stationary phases

Chemical separations are costly in terms of energy, time, and money. Separation methods are optimized with inefficient trial-and-error approaches that lack insight into the molecular dynamics that lead to the success or failure of a separation and, hence, ways to improve the process. We perform super-resolution imaging of fluorescent analytes in five different commercial liquid chromatography materials. Unexpectedly, we observe that chemical functionalization can block more than 50% of the material’s porous interior, rendering it inaccessible to small-molecule analytes. Only in situ imaging unveils the inaccessibility when compared to the industry-accepted ex situ characterization methods. Selectively removing some of the functionalization with solvent restores pore access without substantially altering the single-molecule kinetics that underlie the separation and agree with bulk chromatography measurements. Our molecular results determine that commercial “fully porous” stationary phases are over-functionalized and provide an alternative avenue to characterize and direct separation material design from the bottom-up.

Science & Technology - Other Topics↗

Neural Posterior Estimation for Cataloging Astronomical Images with Spatially Varying Backgrounds and Point Spread Functions

Neural posterior estimation (NPE), a type of amortized variational inference, is a computationally efficient means of constructing probabilistic catalogs of light sources from astronomical images. To date, NPE has not been used to perform inference in models with spatially varying covariates. However, ground-based astronomical images exhibit spatially varying sky backgrounds and point spread functions (PSFs), and accounting for this variation is essential for constructing accurate catalogs of imaged light sources. In this work, we introduce a novel NPE-based cataloging method that trains an inference network with semisynthetic astronomical images generated using PSFs and backgrounds sampled from the Sloan Digital Sky Survey. In experiments with semisynthetic images, we evaluate the method on key cataloging tasks: light source detection, star/galaxy separation, and flux measurement. A “generalist” inference network—trained with diverse PSFs and backgrounds—performs as well as a “specialist” network even when both are evaluated on the specialist’s particular PSF/background combination. This result suggests that a single NPE network can generalize across spatial variations, eliminating the need for retraining on each observational condition.

astronomy image processing↗

Early Results from GLASS-JWST. II. NIRCam Extragalactic Imaging and Photometric Catalog

We present the reduced images and multiwavelength catalog of the first JWST NIRCam extragalactic observations from the GLASS Early Release Science Program, obtained as coordinated parallels of the NIRISS observations of the Abell 2744 cluster. Images in seven bands (F090W, F115W, F150W, F200W, F277W, F356W, and F444W) have been reduced using an augmented version of the official JWST pipeline; we discuss the procedures adopted to remove or mitigate defects in the raw images. We obtain a multiband catalog by means of forced aperture photometry on point-spread function (PSF)-matched images at the position of F444W-detected sources. The catalog is intended to enable early scientific investigations, and it is optimized for faint galaxies; it contains 6368 sources, with limiting magnitude 29.7 at 5 σ in F444W. We release both images and catalog in order to allow the community to become familiar with the JWST NIRCam data and evaluate their merit and limitations given the current level of knowledge of the instrument.

79 ASTRONOMY AND ASTROPHYSICS↗

Nanoindentation-Enhanced Tip-Enhanced Raman Spectroscopy

We combine nanoindentation, herein achieved using atomic force microscopy (AFM)-based pulsed-force lithography, with tip-enhanced Raman spectroscopy (TERS) and imaging. Our approach entails indentation and multimodal characterization of otherwise flat Au substrates, followed by chemical functionalization and TERS spectral imaging of the indented nanostructures. We find that the resulting structures, which vary in shape and size depending on the tip used to produce them, may sustain nano-confined and significantly enhanced local fields. We take advantage of the latter and illustrate TERS-based ultrasensitive detection/chemical fingerprinting as well as chemical reaction imaging – all using a single platform for nano-lithography, topographic imaging, hyperspectral dark field optical microscopy, and TERS.

Wang, Chih-Feng↗

Apparatus, system and method for highlighting activity-induced change in multi-pass synthetic aperture radar imagery

Described herein are various technologies relating to constructing a differenced change product (DCP) image. A plurality of synthetic aperture radar (SAR) images of a scene are generated based upon radar signals directed towards and reflected off of the scene, and a plurality of coherence change detection (CCD) images of the scene are generated based upon the SAR images. The CCD images are registered with one another, and their pixel values re-scaled according to a monotonic mapping function. The DCP image is generated based upon a computed pixel-wise difference between a pair of the re-scaled CCD images. The DCP image identifies locations in the scene where human activity-induced change is likely to have occurred between a pair of SAR passes of the scene.

42 ENGINEERING↗

Quasar UV Luminosity Function at 3.5 < z < 5.0 from SDSS Deep Imaging Data

We present a well-designed sample of more than 1000 type 1 quasars at 3.5 < z < 5 and derive UV quasar luminosity functions (QLFs) in this redshift range. These quasars were selected using the Sloan Digital Sky Survey (SDSS) imaging data in the Stripe 82 and overlap regions with repeat imaging observations that are about 1 mag fainter than the SDSS single-epoch data. The follow-up spectroscopic observations were conducted by the SDSS-III Baryon Oscillation Spectroscopic Survey (BOSS) as one of the BOSS ancillary programs. Reaching i ~ 21.5 mag, our sample bridges previous samples from brighter and deeper surveys. We use a 1/V a method to derive binned QLFs at 3.6 < z < 4.0, 4.0 < z < 4.5, and 4.5 < z < 4.9 and then use a double power-law model to parameterize the QLFs. We also combine our data with literature QLFs to better constrain the QLFs across a much wider luminosity baseline. The faint- and bright-end slopes of the QLFs in this redshift range are around –1.7 and –3.7, respectively, with uncertainties from 0.2 to 0.3 to >0.5. The evolution of the QLFs from z ~ 5 to 3.5 can be described by a pure density evolution model (∝10 kz ) with a parameter k similar to that at 5 < z < 7, suggesting a nearly uniform evolution of the quasar density at z = 3.5–7.

79 ASTRONOMY AND ASTROPHYSICS↗

Localization and coherent imaging of hidden moving objects using laser speckle

Imaging and sensing of moving objects through opaque scattering media is a challenging but important problem in a variety of applications, including environmental sensing, biomedical imaging, and material inspection. We have previously demonstrated a technique to coherently image a moving object through thick, heavily scattering random media using correlations of speckle images as a function of the object’s spatial translation. Here, we demonstrate that this technique can be combined with localization to achieve imaging without prior knowledge of the object’s motion, greatly extending the application domain. This method is effective beyond the thin or weakly scattering regime and, rather than motion being deleterious, exploits the information available when the hidden object is moving, as could be the case in a cluttered terrestrial environment or through substantial levels of biological tissue scatter.

Hastings, Ryan L. (ORCID:0009000095977807)↗

Core line spread function calibration of the X-ray Imaging and Spectroscopy Mission Resolve X-ray calorimeter spectrometer

The Resolve X-ray imaging spectrometer onboard the X-ray Imaging and Spectroscopy Mission consists of a 36 pixel array of high-resolution X-ray calorimeters each with ∼ 5 eV full-width-at-half-maximum (FWHM) spectral resolution in the 0.3 to 12 keV band. The response to monochromatic X-rays (line spread function, LSF) is composed of a narrow Gaussian core and weak extended components caused by energy loss during thermalization. We report on the characterization of the Gaussian core LSF in an extensive ground calibration campaign. We also discuss the characterization of on-orbit resolution, which shows slightly higher FWHM than that obtained on the ground.

Astronomy and AstroPhysics↗

Electron tomography imaging methods with diffraction contrast for materials research

Transmission electron microscopy (TEM) and scanning transmission electron microscopy (STEM) enable the visualization of three-dimensional (3D) microstructures ranging from atomic to micrometer scales using 3D reconstruction techniques based on computed tomography algorithms. This 3D microscopy method is called electron tomography (ET) and has been utilized in the fields of materials science and engineering for more than two decades. Although atomic resolution is one of the current topics in ET research, the development and deployment of intermediate-resolution (non-atomic-resolution) ET imaging methods have garnered considerable attention from researchers. This research trend is probably not irrelevant due to the fact that the spatial resolution and functionality of 3D imaging methods of scanning electron microscopy (SEM) and X-ray microscopy have come to overlap with those of ET. In other words, there may be multiple ways to carry out 3D visualization using different microscopy methods for nanometer-scale objects in materials. From the above standpoint, this review paper aims to (i) describe the current status and issues of intermediate-resolution ET with regard to enhancing the effectiveness of TEM/STEM imaging and (ii) discuss promising applications of state-of-the-art intermediate-resolution ET for materials research with a particular focus on diffraction contrast ET for crystalline microstructures (superlattice domains and dislocations) including a demonstration of in situ dislocation tomography.

36 MATERIALS SCIENCE↗

Attend and Decode: 4D fMRI Task State Decoding Using Attention Models

Source code for Brain Attend and Decode paper. Functional magnetic resonance imaging (fMRI) is a neuroimaging modality that captures the blood oxygen level in a subject's brain while the subject either rests or performs a variety of functional tasks under different conditions. Given fMRI data, the problem of inferring the task, known as task state decoding, is challenging due to the high dimensionality (hundreds of million sampling points per datum) and complex spatio-temporal blood flow patterns inherent in the data. In this work, we propose to tackle the fMRI task state decoding problem by casting it as a 4D spatiotemporal classification problem. We present a novel architecture called Brain Attend and Decode (BAnD), that uses residual convolutional neural networks for spatial feature extraction and self-attention mechanisms for temporal modeling. We achieve significant performance gain compared to previous works on a 7-task benchmark from the large-scale Human Connectome Project-Young Adult (HCP-YA) dataset. We also investigate the transferability of BAnD's extracted features on unseen HCP tasks, either by freezing the spatial feature extraction layers and retraining the temporal model, or finetuning the entire model. The pre-trained features from BAnD are useful on similar tasks while finetuning them yields competitive results on unseen tasks/conditions.

Ng, BrendaM.↗

Search for a heavy composite Majorana neutrino in events with dilepton signatures from proton-proton collisions at s = 13 TeV

Results are presented of a search for a heavy Majorana neutrino Image 1 decaying into two same-flavor leptons ℓ (electrons or muons) and a quark-pair jet. A model is considered in which the Image 1 is an excited neutrino in a compositeness scenario. The analysis is performed using a sample of proton-proton collisions at s = 13 TeV recorded by the CMS experiment at the CERN LHC, corresponding to an integrated luminosity of 138 fb − 1 . The data are found to be in agreement with the standard model prediction. For the process in which the Image 1 is produced in association with a lepton, followed by the decay of the Image 1 to a same-flavor lepton and a quark pair, an upper limit at 95% confidence level on the product of the cross section and branching fraction is obtained as a function of the Image 1 mass Image 2 and the compositeness scale Λ. For this model the data exclude the existence of Image 3 (Image 4) for Image 2 below 6.0 (6.1) TeV, at the limit where Image 2 is equal to Λ. For Image 5, values of Λ less than 20 (23) TeV are excluded. These results represent a considerable improvement in sensitivity, covering a larger parameter space than previous searches in Image 6 collisions at 13 TeV.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Super-resolution computational saturated absorption microscopy

Imaging beyond the diffraction limit barrier has attracted wide attention due to the ability to resolve previously hidden image features. Of the various super-resolution microscopy techniques available, a particularly simple method called saturated excitation microscopy (SAX) requires only simple modification of a laser scanning microscope: The illumination beam power is sinusoidally modulated and driven into saturation. SAX images are extracted from the harmonics of the modulation frequency and exhibit improved spatial resolution. Unfortunately, this elegant strategy is hindered by the incursion of shot noise that prevents high-resolution imaging in many realistic scenarios. Here, we demonstrate a technique for super-resolution imaging that we call computational saturated absorption (CSA) in which a joint deconvolution is applied to a set of images with diversity in spatial frequency support among the point spread functions (PSFs) used in the image formation with saturated laser scanning fluorescence microscopy. CSA microscopy allows access to the high spatial frequency diversity in a set of saturated effective PSFs, while avoiding image degradation from shot noise.

Murray, Gabe (ORCID:0000000295655485)↗

Correlation of Injury Simulation with Clinical Assessment of Traumatic Brain Injury

This report contains a summary of our efforts to correlate head injury simulations predicting intracranial fluid cavitation with clinical assessments of brain injury from blunt impact to the head. Magnetic resonance imaging (MRI) data, collected on traumatic brain injury (TBI) subjects by researchers at the MIND Institute of New Mexico, was acquired for the current work. Specific blunt impact TBI case histories were selected from the TBI data for further study and possible correlation with simulation. Both group and single-subject case histories were examined. We found one single-subject case that was particularly suited for correlation with simulation. Diffusion tensor image (DTI) analysis of the TBI subject identified white matter regions within the brain displaying reductions in fractional anisotropy (FA), an indicator of local damage to the white matter axonal structures. Analysis of functional magnetic resonance image (fMRI) data collected on this individual identified localized regions of the brain displaying hypoactivity, another indicator of brain injury. We conducted high fidelity simulations of head impact experienced by the TBI subject using the Sandia head-neck-torso model and the shock physics computer code CTH. Intracranial fluid cavitation predictions were compared with maps of DTI fractional anisotropy and fMRI hypoactivity to assess whether a possible correlation exists. The ultimate goal of this work is to assess whether one can correlate simulation predictions of intracranial fluid cavitation with the brain injured sites identified by the fMRI and DTI analyses. The outcome of this effort is described in this report.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗