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At least 883 records · Page 49

The cosmic muon and detector simulation framework of the extreme energy events (EEE) experiment

Abstract This paper describes the simulation framework of the extreme energy events (EEE) experiment. EEE is a network of cosmic muon trackers, each made of three multi-gap resistive plate chambers (MRPC), able to precisely measure the absolute muon crossing time and the muon integrated angular flux at the ground level. The response of a single MRPC and the combination of three chambers have been implemented in a GEANT4-based framework (GEMC) to study the telescope response. The detector geometry, as well as details about the surrounding materials and the location of the telescopes have been included in the simulations in order to realistically reproduce the experimental set-up of each telescope. A model based on the latest parametrization of the cosmic muon flux has been used to generate single muon events. After validating the framework by comparing simulations to selected EEE telescope data, it has been used to determine detector parameters not accessible by analysing experimental data only, such as detection efficiency, angular and spatial resolution.

Abbrescia, M.↗

A general framework for gravitational charges and holographic renormalization

We develop a general framework for constructing charges associated with diffeomorphisms in gravitational theories using covariant phase space techniques. This framework encompasses both localized charges associated with space–time subregions, as well as global conserved charges of the full space–time. Expressions for the charges include contributions from the boundary and corner terms in the subregion action, and are rendered unambiguous by appealing to the variational principle for the subregion, which selects a preferred form of the symplectic flux through the boundaries. The Poisson brackets of the charges on the subregion phase space are shown to reproduce the bracket of Barnich and Troessaert for open subsystems, thereby giving a novel derivation of this bracket from first principles. In the context of asymptotic boundaries, we show that the procedure of holographic renormalization can be always applied to obtain finite charges and fluxes once suitable counterterms have been found to ensure a finite action. This enables the study of larger asymptotic symmetry groups by loosening the boundary conditions imposed at infinity. We further present an algorithm for explicitly computing the counterterms that renormalize the action and symplectic potential, and, as an application of our framework, demonstrate that it reproduces known expressions for the charges of the generalized Bondi–Metzner–Sachs algebra.

Physics↗

A Backend-agnostic, Quantum-classical Framework for Simulations of Chemistry in C ++

As quantum computing hardware systems continue to advance, the research and development of performant, scalable, and extensible software architectures, languages, models, and compilers is equally as important to bring this novel coprocessing capability to a diverse group of domain computational scientists. For the field of quantum chemistry, applications and frameworks exist for modeling and simulation tasks that scale on heterogeneous classical architectures, and we envision the need for similar frameworks on heterogeneous quantum-classical platforms. Furthermore, we present the XACC system-level quantum computing framework as a platform for prototyping, developing, and deploying quantum-classical software that specifically targets chemistry applications. We review the fundamental design features in XACC, with special attention to its extensibility and modularity for key quantum programming workflow interfaces and provide an overview of the interfaces most relevant to simulations of chemistry. A series of examples demonstrating some of the state-of-the-art chemistry algorithms currently implemented in XACC are presented, while also illustrating the various APIs that would enable the community to extend, modify, and devise new algorithms and applications in the realm of chemistry.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

STZ: A High Quality and High Speed Streaming Lossy Compression Framework for Scientific Data

Error-bounded lossy compression is one of the most efficient solutions to reduce the volume of scientific data. For lossy compression, progressive decompression and random-access decompression are critical features that enable on-demand data access and flexible analysis workflows. However, these features can severely degrade compression quality and speed. To address these limitations, we propose a novel streaming compression framework that supports both progressive decompression and random-access decompression while maintaining high compression quality and speed. Our contributions are three-fold: (1) we design the first compression framework that simultaneously enables both progressive decompression and random-access decompression; (2) we introduce a hierarchical partitioning strategy to enable both streaming features, along with a hierarchical prediction mechanism that mitigates the impact of partitioning and achieves high compression quality—even comparable to state-of-the-art (SOTA) non-streaming compressor SZ3; and (3) our framework delivers high compression and decompression speed, up to 6.7 × faster than SZ3.

Wang, Daoce [University of Nebraska, Omaha]↗

A Simple, Scalable Large Deformation Solid Mechanics Implementation in the MOOSE Framework

This article describes a large deformation solid mechanics solver implemented as part of the freely available and open source MOOSE finite element simulation framework. The article documents the choices made in developing the solid mechanics framework and describes novel formulations for the gradient operator and constitutive modeling framework made to simplify implementations of different coordinate systems, stabilized gradient operators, and different constitutive model inputs and outputs. In the process, the article describes a new formulation that casts objective integration of the Cauchy stress as a linear transformation of the small stress rate. Finally, the article presents key implementation details and examines the parallel efficiency of the solid mechanics solver implemented in MOOSE. The implementation retains a good weak scaling efficiency beyond 1,000 parallel processes. The article includes a discussion of the factors limiting the parallel efficiency of implicit, large deformation solid mechanics codes on current high-performance computers, with the main current limitation being the scalability of the algebraic multigrid methods used to solve the linearized equilibrium equations.

Applied computing → Computer-aided design↗

CGSim: A Simulation Framework for Large Scale Distributed Computing Environment

Large-scale distributed computing infrastructures such as the Worldwide LHC Computing Grid (WLCG) require comprehensive simulation tools for evaluating performance, testing new algorithms, and optimizing resource allocation strategies. However, existing simulators suffer from limited scalability, hardwired algorithms, lack of real-time monitoring, and inability to generate datasets suitable for modern machine learning approaches. We present CGSim, a simulation framework for large-scale distributed computing environments that addresses these limitations. Built upon the validated SimGrid simulation framework, CGSim provides high-level abstractions for modeling heterogeneous grid environments while maintaining accuracy and scalability. Key features include a modular plugin mechanism for testing custom workflow scheduling and data movement policies, interactive real-time visualization dashboards, and automatic generation of event-level datasets suitable for AI-assisted performance modeling. We demonstrate CGSim’s capabilities through a comprehensive evaluation using production ATLAS PanDA workloads, showing significant calibration accuracy improvements across WLCG computing sites. Scalability experiments show near-linear scaling for multi-site simulations, with distributed workloads achieving 6 × better performance compared to single-site execution. The framework enables researchers to simulate WLCG-scale infrastructures with hundreds of sites and thousands of concurrent jobs within practical time budget constraints on commodity hardware.

Vatsavai, Sairam Sri [Brookhaven National Laborato↗

Integrating Viral Metagenomics into an Ecological Framework

Viral metagenomics has expanded our knowledge of the ecology of uncultured viruses, within both environmental (e.g., terrestrial and aquatic) and host-associated (e.g., plants and animals, including humans) contexts. Here, we emphasize the implementation of an ecological framework in viral metagenomic studies to address questions in virology rarely considered ecological, which can change our perception of viruses and how they interact with their surroundings. Additionally, an ecological framework explicitly considers diverse variants of viruses in populations that make up communities of interacting viruses, with ecosystem-level effects. It provides a structure for the study of the diversity, distributions, dynamics, and interactions of viruses with one another, hosts, and the ecosystem, including interactions with abiotic factors. An ecological framework in viral metagenomics stands poised to broadly expand our knowledge in basic and applied virology. We highlight specific fundamental research needs to capitalize on its potential and advance the field.

59 BASIC BIOLOGICAL SCIENCES↗

Localized Corrosion: Passive Film Breakdown vs. Pit Growth Stability: Part IV. The Role of Salt Film in Pit Growth: A Mathematical Framework

In Part II of this series, a framework for pit stability established, and it was expanded in Part III to describe salt film formation in pits. It was shown that a salt film was not required for pit stabilization; it is just a consequence of a pit achieving diffusion-controlled growth. A salt film can form on the surface of both metastable and stable pits when the maximum pit dissolution current density, i diss,max , exceeds the diffusion-limited current density, i lim . Based on this clarifying framework, this paper shows mathematically that the main function of a salt film is to adjust the actual potential at pit surface by regulating its thickness, thus to restrict the anodic dissolution rate of pit surface metal at the value of diffusion-limited current density. As a result, the film thickness will respond to any changes in the applied potential, temperature, pit depth, ohmic potential drop in the solution and perforation radius of the pit cover. Additionally, the pit stability criteria that have been discussed previously in the literature are reinterpreted using the new framework, and they are unified by the critical temperatures, potentials and pit depths for pit stabilization and salt film formation proposed in Part III.

36 MATERIALS SCIENCE↗

CoMTE: Counterfactual Explanations for Supervised Machine Learning Frameworks on Multivariate Time Series Data

CoMTE is a novel explainability technique that provides counterfactual explanations for supervised machine learning frameworks on multivariate time series data. CoMTE outperforms state-of-the-art explainability methods on several different machine learning frameworks and data sets in comprehensibility and robustness. CoMTE can be used to debug machine learning frameworks and gain a better understanding of the underlying multivariate time series data. Sandia National Laboratories is a multimission laboratory managed and operated by National Technology & Engineering Solutions of Sandia, LLC, a wholly owned subsidiary of Honeywell International Inc., for the U.S. Department of Energy’s National Nuclear Security Administration under contract DE-NA0003525. SAND2021-1686 O

Leung, VitusJ.↗

Meld: A project for exploring how to meet DUNE's framework needs

Existing data-processing frameworks for HEP experiments are largely based on collider-physics concepts, which may be based on rigid, event-based data hierarchies. These data organizations are not always helpful for neutrino experiments, which must sometimes work around such restrictions by manually splitting apart events into constructs that are better suited for neutrino physics. The purpose of Meld is to explore more flexible data organizations by treating a frameworks job as: (1) A graph of data-product sequences connected by (2) User-defined functions that serve as operations to (3) Framework-provided higher-order functions.

Knoepfel, KyleJ. [Fermi National Accelerator Labor↗

Implementation of ISO 15118-202 messages within Everest EV Charging Open Source Framework [SWR-25-56]

This software implements the messages defined in the ISO 15118-202 standard within the Everest EV Charging open source framework. The protocol and messages defined in the ISO 15118-202 standard enable the exchange of additional information which is not available for exchange within the currently deployed EV/EVSE communications protocols. This information includes co-identification parameters, error message exchange and more. This fork of the everest-core repository adds a prototype of the Extensible Supply Equipment Communication Controller (SECC) Discovery Protocol (ESDP) implemented based on a draft of the ISO 15118-202 standard. This is achieved through additions and modifications to the EvseV2G module. The implementation provides a demonstration of the ESDP messages, encoding and decoding but does not include a full integration within the Everest framework. Much of the information being sent over ESDP in this implementation is set statically for the sake of demonstrating the protocol itself. This fork of the ext-switchev-iso15118 repository adds a prototype of the Extensible Supply Equipment Communication Controller (SECC) Discovery Protocol (ESDP) implemented based on a draft of the ISO 15118-202 standard. The implementation provides a demonstration of the ESDP messages, encoding and decoding but does not include a full integration within the Everest framework. Much of the information being sent over ESDP in this implementation is set statically for the sake of demonstrating the protocol itself. This fork adds the ESDP features for only the EVCC controller because that is the only portion that is utilized in the everest Software-in-the-Loop.

Watt, Ed [National Renewable Energy Laboratory (NR↗

Osprey Framework v0.2.2

The Alpha Berkeley Framework is a software architecture for building agentic AI systems that coordinate multi-step workflows in scientific and industrial environments. It is based on a plan-first orchestration model, where natural language requests are translated into execution plans with explicit dependencies and optional human approval. The framework includes capability classification, which selects relevant tools on a per-task basis to keep orchestration efficient as the number of available tools grows. It incorporates task extraction methods that compress conversational context and integrate external resources such as databases, APIs, and knowledge bases into structured, machine-readable tasks. Execution is supported by modular services with checkpointing, artifact management, and error handling, allowing workflows to be paused, inspected, and resumed. The system is designed for deployment in production environments, supporting both local and containerized execution as well as integration with HPC clusters. Interfaces include command-line tools, browser-based workflows, and containerized services. The framework has been demonstrated in tutorial examples and deployed at the Advanced Light Source, where it coordinates accelerator control and analysis workflows.

Hellert, Thorsten [Lawrence Berkeley National Labo↗

Toward a Climate OSSE Framework for Satellite Mission Design

The rich history of observing system simulation experiments (OSSEs) does not yet include a well-established framework for using climate models. The need for a climate OSSE is triggered by the need to quantify the value of a particular measurement for reducing the uncertainty in climate predictions, which differ from numerical weather predictions in that they depend on future atmospheric composition rather than the current state of the weather. However, both weather and climate modeling communities share a need for motivating major observing system investments. Here, we outline a new framework for climate OSSEs that leverages the use of machine learning to calibrate climate model physics against existing satellite data. We demonstrate its application using NASA’s GISS-E3 model to objectively quantify the value of potential future improvements in spaceborne measurements of Earth’s planetary boundary layer. A mature climate OSSE framework should be able to quantitatively compare the ability of proposed observing system architectures to answer a climate-related question, thus offering added value throughout the mission design process, which is subject to increasingly rapid advances in instrument and satellite technology. Technical considerations include selection of observational benchmarks and climate projection metrics, approaches to pinpoint the sources of model physics uncertainty that dominate uncertainty in projections, and the use of instrument simulators. Community and policy-making considerations include the potential to interface with an established culture of model intercomparison projects and a growing need to economically assess the value-driven efficiency of social spending on Earth observations.

54 ENVIRONMENTAL SCIENCES↗

Using a Canopy Model Framework to Improve Large-Eddy Simulations of the Neutral Atmospheric Boundary Layer in the Weather Research and Forecasting Model

A canopy model framework is implemented in the Weather Research and Forecasting Model to improve the accuracy of large-eddy simulations (LES) of the atmospheric boundary layer (ABL). The model includes two options that depend on the scale of surface roughness elements. A resolved canopy model, typically used to model flow through vegetation canopies, is employed when roughness elements are resolved by the vertical LES grid. In the case of unresolved roughness, a modified “pseudocanopy model” is developed to distribute drag over a shallow layer above the surface. Both canopy model options are validated against idealized test cases in neutral stability conditions and are shown to improve surface layer velocity profiles relative to simulations employing Monin–Obukhov similarity theory (MOST), which is commonly used as a surface boundary condition in ABL models. Use of the canopy model framework also leads to increased levels of resolved turbulence kinetic energy and turbulent stresses. Because LES of the ABL has a well-known difficulty recovering the expected logarithmic velocity profile (log law) in the surface layer, particular focus is placed on using the pseudocanopy model to alleviate this issue over a range of model configurations. Tests with varying surface roughness values, LES closures, and grid aspect ratios confirm that the pseudocanopy model generally improves log-law agreement relative to simulations that employ a standard MOST boundary condition. The canopy model framework thus represents a low-cost, easy-to-implement method for improving LES of the ABL.

17 WIND ENERGY↗

Coupling of regional geophysics and local soil-structure models in the EQSIM fault-to-structure earthquake simulation framework

Accurate understanding and quantification of the risk to critical infrastructure posed by future large earthquakes continues to be a very challenging problem. Earthquake phenomena are quite complex and traditional approaches to predicting ground motions for future earthquake events have historically been empirically based whereby measured ground motion data from historical earthquakes are homogenized into a common data set and the ground motions for future postulated earthquakes are probabilistically derived based on the historical observations. This procedure has recognized significant limitations, principally due to the fact that earthquake ground motions tend to be dictated by the particular earthquake fault rupture and geologic conditions at a given site and are thus very site-specific. Historical earthquakes recorded at different locations are often only marginally representative. There has been strong and increasing interest in utilizing large-scale, physics-based regional simulations to advance the ability to accurately predict ground motions and associated infrastructure response. However, the computational requirements for simulations at frequencies of engineering interest have proven a major barrier to employing regional scale simulations. In a U.S. Department of Energy Exascale Computing Initiative project, the EQSIM application development is underway to create a framework for fault-to-structure simulations. This framework is being prepared to exploit emerging exascale platforms in order to overcome computational limitations. This article presents the essential methodology and computational workflow employed in EQSIM to couple regional-scale geophysics models with local soil-structure models to achieve a fully integrated, complete fault-to-structure simulation framework. Here, the computational workflow, accuracy and performance of the coupling methodology are illustrated through example fault-to-structure simulations.

97 MATHEMATICS AND COMPUTING↗

A simplified framework for prediction of sensor network coverage in real-time structural health monitoring of plate-like structures

In this article, the coverage area prediction of piezoelectric sensor network for detecting a specific type of under-surface crack in plate-like structures is addressed. In particular, this article proposes a simplified framework to estimate the coverage of any given sensor network arrangement when a critical defect is known. Based on numerical results from finite element methods (FEM), a simplified framework to estimate coverage area of any given network arrangement is developed. Using such a simplified framework, one can avoid time-consuming procedure of evaluating numerous FEM models in estimating sensor network coverage. Back-scatter fields of partial cracks are estimated using a proposed function, whose parameters are estimated from the results of a limited number of FEM simulations. The proposed function efficiently predicts the back-scattered field of any combination of transmitters and receivers for a given crack geometry. Superposition is used to estimate the coverage area of an arbitrary piezoelectric (e.g., PZT) sensor network. It is shown that the coverage area of a sensor network depends on both sensor network geometry and defect properties (e.g., crack inclination) and it is not necessarily a linear function of the number of sensors. Furthermore, it is shown that the network arrangement has an important effect on the geometry of the coverage area. Experimental results of a network of 14 PZTs in two clusters confirm the accuracy of the method.

Engineering↗

Conducting more inclusive solar geoengineering research: A feminist science framework

Solar geoengineering, or deliberate climate modification, has been receiving increased attention in recent years. Given the far-reaching consequences of any potential solar geoengineering deployments, it is prudent to identify inherent biases, blind spots, and other potential issues at all stages of the research process. Here we articulate a feminist science-based framework to concretely describe how solar geoengineering researchers can be more inclusive of different perspectives and potentially contradictory conclusions, in the process illuminating potential implicit bias and enhancing the conclusions that can be gained from their studies. Importantly, this framework is an adoptable method of practice that can be refined, with the aim of conducting better research in solar geoengineering. As an illustration, we retrospectively apply this framework to a well-read solar geoengineering study (also led by the first author of this study), improving transparency by revealing its implicit values, conclusions made from its evidence base, and the methodologies that study pursues. We conclude here with a set of recommendations for the geoengineering research community whereby more inclusive research can become a regular part of practice. Throughout this process, we illustrate how feminist science scholars can use this approach to study climate modeling.

54 ENVIRONMENTAL SCIENCES↗

A framework for inferring and analyzing pharmacotherapy treatment patterns

Background: To discover pharmacotherapy prescription patterns and their statistical associations with outcomes through a clinical pathway inference framework applied to real-world data. Methods: We apply machine learning steps in our framework using a 2006 to 2020 cohort of veterans with major depressive disorder (MDD). Outpatient antidepressant pharmacy fills, dispensed inpatient antidepressant medications, emergency department visits, self-harm, and all-cause mortality data were extracted from the Department of Veterans Affairs Corporate Data Warehouse. Results: Our MDD cohort consisted of 252,179 individuals. During the study period there were 98,417 emergency department visits, 1,016 cases of self-harm, and 1,507 deaths from all causes. The top ten prescription patterns accounted for 69.3% of the data for individuals starting antidepressants at the fluoxetine equivalent of 20-39 mg. Additionally, we found associations between outcomes and dosage change. Conclusions: For 252,179 Veterans who served in Iraq and Afghanistan with subsequent MDD noted in their electronic medical records, we documented and described the major pharmacotherapy prescription patterns implemented by Veterans Health Administration providers. Ten patterns accounted for almost 70% of the data. Associations between antidepressant usage and outcomes in observational data may be confounded. The low numbers of adverse events, especially those associated with all-cause mortality, make our calculations imprecise. Furthermore, our outcomes are also indications for both disease and treatment. Despite these limitations, we demonstrate the usefulness of our framework in providing operational insight into clinical practice, and our results underscore the need for increased monitoring during critical points of treatment.

60 APPLIED LIFE SCIENCES↗