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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 91 records · Page 5
All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

AmeriFlux FLUXNET-1F US-Ho1 Howland Forest (main tower)

This is the AmeriFlux Management Project (AMP) created FLUXNET-1F version of the carbon flux data for the site US-Ho1 Howland Forest (main tower). This is the FLUXNET version of the carbon flux data for the site US-Ho1 Howland Forest (main tower) produced by applying the standard ONEFlux (1F) software. Site Description - Closed conifer forest, minimal disturbance. References: Fernandez et al. (1993), Canadian Journal of Soil Science 73 317-328. Hollinger et al. (1999), Global Change Biology 5: 891-902. Savage KE, Davidson EA (2001), Global Biogeochemical Cycles 15 337-350. Scott et al. (2004), Environmental Management, Vol. 33, Supplement 1, pp. S9-S22. Hollinger et al. (2004), Global Change Biology 10: 1689-1706.

Ouimette, Andrew↗
DOE OSTI2023

Disentangling Beam Losses in The Fermilab Main Injector Enclosure Using Real-Time Edge AI

The Fermilab Main Injector enclosure houses two accelerators, the Main Injector and Recycler Ring. During normal operation, high intensity proton beams exist simultaneously in both. The two accelerators share the same beam loss monitors (BLM) and monitoring system. Deciphering the origin of any of the 260 BLM readings is often difficult. The (Accelerator) Real-time Edge AI for Distributed Systems project, or READS, has developed an AI/ML model, and implemented it on fast FPGA hardware, that disentangles mixed beam losses and attributes probabilities to each BLM as to which machine(s) the loss originated from in real-time. The model inferences are then streamed to the Fermilab accelerator controls network (ACNET) where they are available for operators and experts alike to aid in tuning the machines.

43 PARTICLE ACCELERATORS↗
DOE OSTI2022

Residual Dose and Environmental Monitoring for the Fermilab Main Injector Tunnel Using the Data Acquisition Logging Engine (Dale)

The Recycler and the Main Injector are part of the Fermilab Accelerator complex used to deliver proton beam to the different experiments. It is very important to control and minimize losses in both machines during operation, to reduce personnel dose from residual activation and to preserve component lifetime. To minimize losses, we need to identify the loss points and adjust the components accordingly. The Data Acquisition Loss Engine (DALE) platform has been developed within the Main Injector department and upgraded throughout the years. DALE is used to survey the entire enclosure for residual dose rates and environmental readings when unrestricted access to the enclosure is possible. Currently DALE has two radiation meters, which are aligned along each machine, so loss points can be identified for both at the same time. DALE attaches to the enclosure carts and is continuously in motion monitoring dose rates and other environmental readings. In this paper we will describe how DALE is used to provide radiation maps of the residual dose rates in the enclosure. We will also compare the loss points with the Beam Loss monitor data.

43 PARTICLE ACCELERATORS↗
DOE OSTI2022

Semantic Regression for Disentangling Beam Losses in the Fermilab Main Injector and Recycler

Fermilab’s Main Injector enclosure houses two accelerators: the Main Injector (MI) and the Recycler (RR). In periods of joint operation, when both machines contain high intensity beam, radiative beam losses from MI and RR overlap on the enclosure’s beam loss monitoring (BLM) system, making it difficult to attribute those losses to a single machine. Incorrect diagnoses result in unnecessary downtime that incurs both financial and experimental cost. In this work, we introduce a novel neural approach for automatically disentangling each machine’s contributions to those measured losses. Using a continuous adaptation of the popular UNet architecture in conjunction with a novel data augmentation scheme, our model accurately infers the machine of origin on a per-BLM basis in periods of joint and independent operation. Crucially, by extracting beam loss information at varying receptive fields, the method is capable of learning both local and global machine signatures and producing high quality inferences using only raw BLM loss measurements.

43 PARTICLE ACCELERATORS↗
DOE OSTI2024

Analysis of Dust and Corrosion Witness Samples Recovered from SNF Dry Storage Systems, Maine Yankee, 2023

This report documents the results of a long-term (5.79 year) exposure of 4-point bend corrosion test samples in the inlet and outlet vents of four spent nuclear fuel dry storage systems at the Maine Yankee Independent Spent Fuel Storage Installation. The goal of the test was to evaluate the corrosiveness of salt aerosols in a realistic near-marine environment, providing a data set for improved understanding of stress corrosion cracking of spent nuclear fuel dry storage canisters. Examination of the samples after extraction showed minor corrosion was present, mostly on rough-ground surfaces. However, dye penetrant testing showed that no SCC cracks were present. Dust collected on coupons co-located with the corrosion specimens was analyzed by scanning electron microscopy and leached to determine the soluble salts present. The dust was mostly organic material (pollen and stellate trichomes), with lesser detrital mineral grains. Salts present were a mix of sea-salts and continental salts, with chloride dominating the anions, but significant amounts of nitrate were also present. Both corrosion samples and dust samples showed evidence of wetting, indicating entry of water into the vents. The results of this field test suggest that the environment at Maine Yankee is not highly aggressive, although extrapolation from the periodically wetted vent samples to the hot, dry, canister surface may be difficult. No stress corrosion cracks were observed, but minor corrosion was present despite high nitrate concentrations in the salts. These observations may help address the ongoing question of the importance of nitrate in suppressing corrosion and SCC.

11 NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗
DOE OSTI2025

Ray-Tracing Simulations Characterizing the Performance of the Proposed 2028 HFIR HB4 Main Shutter

The Main Shutter at HB4 will serve two purposes after the HFIR Beryllium Reflector Replacement, planned to take place in 2028. First as the primary certified safety control permitting the passage of neutrons from the cold source in the HFIR pressure vessel into the cold guide hall, and second as the first set of reflecting surfaces used to guide neutrons from the source and into the individual guide starts for each instrument in the cold guide hall. This report outlines a the simulations and analyses used to conclude that the HB4 Main Shutter Insert alignment is critical to associated instrument performance. In general, the alignment of these surfaces to within +/-0.25 millimeters and +/-0.05° across all dimensions will ensure losses are no worse than 1% for any of the guide starts.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗
DOE OSTI2025

Techno-Economic Analysis of Photovoltaics and Battery Storage for Maine [Slides]

Maine GEO was interested in a small-scale pilot using REopt to expand on previous resilience efforts and better understand the most useful information to gather from facilities to maximize the efficacy of the analysis. The pilot began with identification of three pilot facilities from the existing Maine Community Resilience Partnership (MCRP) cohort, selection of the facilities prioritizing: social vulnerability, community led planning work and commitment to ongoing work. The technical assistance focused on working with identified facilities to help scope the project and identify their goals and then provide technical specifications on optimal energy generation and storage strategies for each community. At the conclusion of the project, participating facilities received a REopt analysis report, including optimal generation and storage strategies to address identified goals and next steps and considerations for implementation.

24 POWER TRANSMISSION AND DISTRIBUTION↗
DOE OSTI2026

Automating Orbit Correction In The Main Injector 8 GeV Line

The Main Injector 8 GeV line (MI8 line) transports beam from Fermilab s Booster accelerator to either the Booster Neutrino experiments (BNB), the Recycler or the Main Injector. Often the orbit of the beam through the MI8 line differs depending on the beam destination. The beam is collimated in the MI8 line, so increasing intensities and repetition rates make controlling orbits through the collimators a necessity. The current method of regulating the MI8 line orbit with DC corrector settings is insufficient. A system named MITUNE is being developed to sample and categorize all beams through the MI8 line and automatically calculate and apply proper dipole corrector ramps to maintain desired orbits for pulses to any destination.

Hazelwood, K. J. [Fermilab]↗
DOE OSTI2021

Probing the SARS-CoV-2 main protease active site as a target to inhibit viral replication

SARS-CoV-2 replication involves the synthesis of two large proteins, which are inactive and harmless until the viral main protease enzyme (3CL M pro ) uses them as substrates, cleaving them into many smaller, functional products. Dr Andrey Kovalevsky and his team from Oak Ridge National Laboratory propose a design of novel inhibitors and the repurposing of clinical drugs developed to treat other diseases for the treatment of COVID-19. Finally, the team uses room temperature crystallography with X-rays and neutrons to guide structure-based and computer-assisted drug design and to assess the ability of drugs to inhibit the SARS-CoV-2 main protease, causing virus replication to stop.

Kneller, Daniel↗
DOE OSTI2021

Tidal Circularization of Binaries by Resonance Locking. I. The Importance of the Pre-main Sequence

Although tidal dissipation in binary stars has been studied for over a century, theoretical predictions have yet to match the observed properties of binary populations. This work quantitatively examines the recent proposal of tidal circularization by resonance locking, where tidal dissipation arises from resonances between the star’s natural oscillation frequencies and harmonics of the orbital frequency, and where resonances are “locked” for an extended period of time due to concurrent stellar evolution. We focus on tidal resonances with axi-symmetric gravity modes, and examine binaries with primary masses from one to two solar masses. We find that orbital evolution via resonance locking occurs primarily during the star’s pre-main-sequence phase, with the main-sequence phase contributing negligibly. Resonance locking, ignoring nonlinearity, can circularize binaries with peri-center distances out to ∼10 stellar radii, corresponding to circular periods of ∼4–6 days. However, we find resonantly excited gravity modes will become nonlinear in stellar cores, which prevents them from reaching their full, linear amplitudes. We estimate that such a “saturated resonance lock” reduces the circularization period by about a third, but resonance locking remains much more effective than the cumulative actions of equilibrium tides. In a companion paper, we examine recent binary data to compare against theory.

71 CLASSICAL AND QUANTUM MECHANICS, GENERAL PHYSIC↗
DOE OSTI2022

Iron isotope evidence of an impact origin for main-group pallasites

Despite decades of work, the origin of pallasite meteorites has remained enigmatic. Long thought to be samples of the core-mantle boundary of differentiated asteroids, more recent studies have suggested a range of mechanisms for pallasite formation. These include olivine-metal mixing during a planetesimal collision and the intrusion of over-pressured core liquids into a planetesimal mantle. Establishing if the olivine and metal that comprise pallasites were once equilibrated at high temperature remains key to discriminating between these hypotheses. We determined the iron isotope compositions of olivine and metal in eleven main-group pallasites and found, in all cases, that olivine is isotopically lighter than metal. To interpret these data, we constrained the olivine-metal equilibrium Fe isotope fractionation with ab initio calculations and high temperature experiments. These independent approaches show that olivine preferentially incorporates the heavy isotopes of iron relative to metal. Our results demonstrate that pallasitic olivine and metal never achieved isotopic equilibrium with respect to iron. This precludes extended cooling at high temperature and is best reconciled with an impact origin for the main-group pallasites.

58 GEOSCIENCES↗
DOE OSTI2022

Synchronous High-frequency Distributed Readout For Edge Processing At The Fermilab Main Injector And Recycler

The Main Injector (MI) was commissioned using data acquisition systems developed for the Fermilab Main Ring in the 1980s. New VME-based instrumentation was commissioned in 2006 for beam loss monitors (BLM)[2], which provided a more systematic study of the machine and improved displays of routine operation. However, current projects are demanding more data and at a faster rate from this aging hardware. One such project, Real-time Edge AI for Distributed Systems (READS), requires the high-frequency, low-latency collection of synchronized BLM readings from around the approximately two-mile accelerator complex. Significant work has been done to develop new hardware to monitor the VME backplane and broadcast BLM measurements over Ethernet, while not disrupting the existing operations critical functions of the BLM system. This paper will detail the design, implementation, and testing of this parallel data pathway.

43 PARTICLE ACCELERATORS↗
DOE OSTI2023

Contribution of the catalytic dyad of SARS-CoV-2 main protease to binding covalent and noncovalent inhibitors

The effect of mutations of the catalytic dyad residues of SARS-CoV-2 main protease (MPro WT ) on the thermodynamics of binding of covalent inhibitors comprising nitrile [nirmatrelvir (NMV), NBH2], aldehyde (GC373), and ketone (BBH1) warheads to MPro is examined together with room temperature X-ray crystallography. When lacking the nucleophilic C145, NMV binding is ~400-fold weaker corresponding to 3.5 kcal/mol and 13.3 °C decrease in free energy (ΔG) and thermal stability (T m ), respectively, relative to MPro WT . The H41A mutation results in a 20-fold increase in the dissociation constant (K d ), and 1.7 kcal/mol and 1.4 °C decreases in ΔG and T m , respectively. Increasing the pH from 7.2 to 8.2 enhances NMV binding to MPro H41A , whereas no significant change is observed in binding to MPro WT . Structures of the four inhibitor complexes with MPro 1-304/C145A show that the active site geometries of the complexes are nearly identical to that of MPro WT with the nucleophilic sulfur of C145 positioned to react with the nitrile or the carbonyl carbon. These results support a two-step mechanism for the formation of the covalent complex involving an initial non-covalent binding followed by a nucleophilic attack by the thiolate anion of C145 on the warhead carbon. Noncovalent inhibitor ensitrelvir (ESV) exhibits a binding affinity to MPro WT that is similar to NMV but differs in its thermodynamic signature from NMV. The binding of ESV to MPro C145A also results in a significant, but smaller, increase in K d and decrease in ΔG and T m , relative to NMV.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2022

Unmasking the Conformational Stability and Inhibitor Binding to SARS-CoV-2 Main Protease Active Site Mutants and Miniprecursor

We recently demonstrated that inhibitor binding reorganizes the oxyanion loop of a monomeric catalytic domain of SARS CoV-2 main protease (MPro) from an unwound (E) to a wound (active, E*) conformation, independent of dimerization. Here we assess the effect of the flanking N-terminal residues, to imitate the MPro precursor prior to its autoprocessing, on conformational equilibria rendering stability and inhibitor binding. Thermal denaturation (T m ) of C145A mutant, unlike H41A, increases by 6.8 °C, relative to wild-type mature dimer. An inactivating H41A mutation to maintain a miniprecursor containing TSAVL[Q or E] of the flanking nsp4 sequence in an intact form [ (-6) MPro H41A and (-6*) MPro H41A , respectively], and its corresponding mature MPro H41A were systematically examined. While the H41A mutation exerts negligible effect on T m and dimer dissociation constant (K dimer ) of MPro H41A , relative to the wild type MPro, both miniprecursors show a 4–5 °C decrease in T m and > 85-fold increase in K dimer as compared to MPro H41A . The K d for the binding of the covalent inhibitor GC373 to (-6*) MPro H41A increases ~12-fold, relative to MPro H41A , concomitant with its dimerization. While the inhibitor-free dimer exhibits a state in transit from E to E* with a conformational asymmetry of the protomers’ oxyanion loops and helical domains, inhibitor binding restores the asymmetry to mature-like oxyanion loop conformations (E*) but not of the helical domains. Finally, disorder of the terminal residues 1–2 and 302–306 observed in both structures suggest that N-terminal autoprocessing is tightly coupled to the E-E* equilibrium and stable dimer formation.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2020

Unusual zwitterionic catalytic site of SARS–CoV-2 main protease revealed by neutron crystallography

The main protease (3CL M pro ) from SARS–CoV-2, the etiological agent of COVID-19, is an essential enzyme for viral replication. 3CL M pro possesses an unusual catalytic dyad composed of Cys 145 and His 41 residues. A critical question in the field has been what the protonation states of the ionizable residues in the substrate-binding active-site cavity are; resolving this point would help understand the catalytic details of the enzyme and inform rational drug development against this pernicious virus. Here, we present the room-temperature neutron structure of 3CL M pro , which allowed direct determination of hydrogen atom positions and, hence, protonation states in the protease. We observe that the catalytic site natively adopts a zwitterionic reactive form in which Cys 145 is in the negatively charged thiolate state and His 41 is doubly protonated and positively charged, instead of the neutral unreactive state usually envisaged. The neutron structure also identified the protonation states, and thus electrical charges, of all other amino acid residues and revealed intricate hydrogen-bonding networks in the active-site cavity and at the dimer interface. The fine atomic details present in this structure were made possible by the unique scattering properties of the neutron, which is an ideal probe for locating hydrogen positions and experimentally determining protonation states at near-physiological temperature. Our observations provide critical information for structure-assisted and computational drug design, allowing precise tailoring of inhibitors to the enzyme's electrostatic environment.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2023

On dysprosium utilisation in multi-main-phase Nd–Dy–Fe–B magnets with core–shell microstructures

The development of high-performance Nd–Dy–Fe–B magnets that minimise the consumption of the scarce rare earth (RE) element Dy remains a major global scientific and technological quest. Here, we designed an alloy microstructure comprising of a uniform Dy-lean core–Dy-rich shell in a series of multi-main-phase (MMP) Nd–Dy–Fe–B magnets. The resulting MMP Dy1 and Dy3 magnets with an overall Dy level of 1 and 3 wt.% possessed values of 0.48 and 0.29 T/wt.% of coercivity increment per unit weight percentage of the Dy addition, respectively. Most importantly, the resulting MMP Dy3 magnet exhibited a high coercivity (2.38 T), an excellent thermal stability of the coercivity (|β| = 0.531%/°C), a high squareness factor (> 95%), all with little diminishment in the remanent magnetisation (1.35 T) and maximum energy product (43.6 MGOe). These properties are superior to the currently available sintered Nd–Dy–Fe–B magnets which utilise higher levels of Dy of 5 wt.%. Via magnetic and multi-scale microstructural characterisation experiments and micromagnetic simulations, the formation of the Dy-lean core–Dy-rich shell microstructure is rationalised via solid-state-diffusion and solution reprecipitation during liquid-phase sintering. The Dy-lean core–Dy-rich shell microstructure and the non-ferromagnetic low-Fe RE-rich grain boundary phase led to the synergistic magnetic performance. This is significant in the context of the MMP Nd–Dy–Fe–B magnets being applied to large-scale production. The present work establishes a pathway for the more sustainable utilisation of Dy in permanent magnets via formation of a uniform core–shell microstructure.

36 MATERIALS SCIENCE↗
DOE OSTI2022

A multi-pronged evaluation of aldehyde-based tripeptidyl main protease inhibitors as SARS-CoV-2 antivirals

As an essential enzyme of SARS-CoV-2, the COVID-19 pathogen, main protease (M Pro ) is a viable target to develop antivirals for the treatment of COVID-19. By varying chemical compositions at both P2 and P3 positions and the N-terminal protection group, we synthesized 18 tripeptidyl M Pro inhibitors that contained also an aldehyde warhead and β-(S-2-oxopyrrolidin-3-yl)-alaninal at the P1 position. Systematic characterizations of these inhibitors were conducted, including their in vitro enzymatic inhibition potency, X-ray crystal structures of their complexes with M Pro , their inhibition of M Pro transiently expressed in 293T cells, and cellular toxicity and SARS-CoV-2 antiviral potency of selected inhibitors. These inhibitors have a large variation of determined in vitro enzymatic inhibition IC 50 values that range from 4.8 to 650 nM. Here, the determined in vitro enzymatic inhibition IC 50 values reveal that relatively small side chains at both P2 and P3 positions are favorable for achieving high in vitro M Pro inhibition potency, the P3 position is tolerable toward unnatural amino acids with two alkyl substituents on the α-carbon, and the inhibition potency is sensitive toward the N-terminal protection group. X-ray crystal structures of M Pro bound with 16 inhibitors were determined. In all structures, the M Pro active site cysteine interacts covalently with the aldehyde warhead of the bound inhibitor to form a hemithioacetal that takes an S configuration. For all inhibitors, election density around the N-terminal protection group is weak indicating possible flexible binding of this group to M Pro . In M Pro , large structural variations were observed on residues N142 and Q189. Unlike their high in vitro enzymatic inhibition potency, most inhibitors showed low potency to inhibit M Pro that was transiently expressed in 293T cells. Inhibitors that showed high potency to inhibit M Pro transiently expressed in 293T cells all contain O-tert-butyl-threonine at the P3 position. These inhibitors also exhibited relatively low cytotoxicity and high antiviral potency. Overall, our current and previous studies indicate that O-tert-butyl-threonine at the P3 site is a key component to achieve high cellular and antiviral potency for tripeptidyl aldehyde inhibitors of M Pro .

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

A systematic exploration of boceprevir-based main protease inhibitors as SARS-CoV-2 antivirals

Boceprevir is an HCV NSP3 inhibitor that was explored as a repurposed drug for COVID-19. It inhibits the SARS-CoV-2 main protease (M Pro ) and contains an α-ketoamide warhead, a P1 β-cyclobutylalanyl moiety, a P2 dimethylcyclopropylproline, a P3 tert-butylglycine, and a P4 N-terminal tert-butylcarbamide. By introducing modifications at all four positions, we synthesized 20 boceprevir-based M Pro inhibitors including PF-07321332 and characterized their M Pro inhibition potency in test tubes (in vitro) and 293T cells (in cellulo). Crystal structures of M Pro bound with 10 inhibitors and cytotoxicity and antiviral potency of 4 inhibitors were characterized as well. Replacing the P1 site with a β-(S-2-oxopyrrolidin-3-yl)-alanyl (Opal) residue and the warhead with an aldehyde leads to high in vitro potency. The original moieties at P2, P3 and the P4 N-terminal cap positions in boceprevir are better than other tested chemical moieties for high in vitro potency. In crystal structures, all inhibitors form a covalent adduct with the M Pro active site cysteine. Here, the P1 Opal residue, P2 dimethylcyclopropylproline and P4 N-terminal tert-butylcarbamide make strong hydrophobic interactions with M Pro , explaining high in vitro potency of inhibitors that contain these moieties. A unique observation was made with an inhibitor that contains a P4 N-terminal isovaleramide. In its M Pro complex structure, the P4 N-terminal isovaleramide is tucked deep in a small pocket of M Pro that originally recognizes a P4 alanine side chain in a substrate. Although all inhibitors show high in vitro potency, they have drastically different in cellulo potency to inhibit ectopically expressed M Pro in human 293T cells. In general, inhibitors with a P4 N-terminal carbamide or amide have low in cellulo potency. This trend is reversed when the P4 N-terminal cap is changed to a carbamate. The installation of a P3 O-tert-butyl-threonine improves in cellulo potency. Three molecules that contain a P4 N-terminal carbamate were advanced to cytotoxicity tests on 293T cells and antiviral potency tests on three SARS-CoV-2 variants. They all have relatively low cytotoxicity and high antiviral potency with EC 50 values around 1 μM. A control compound with a nitrile warhead and a P4 N-terminal amide has undetectable antiviral potency. Based on all observations, we conclude that a P4 N-terminal carbamate in a boceprevir derivative is key for high antiviral potency against SARS-CoV-2.

60 APPLIED LIFE SCIENCES↗