Advancing Space Radiation Biology with Big Data, Open Science, Standards, and ML
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Sylvain V. Costes↗
SEARCH · Search NASA
Results for “big data”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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Cancer Biomarkers and Big Data: A Planetary Science Approach
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Daniel J. Crichton↗
Chemistream: Big Data Materials on HPC Clouds
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cloud computing↗
Analysis Ready Data in Analytics Optimized Data Stores for Analysis of Big Earth Data in the Cloud
Cloud computing offers the possibility of making the analysis of Big Data approachable for a wider community due to affordable access to computing power, an ecosystem of usable tools for parallel processing, and migration of many large datasets to archives in the cloud, allowing data-proximal computing. Generally, data analysis acceleration in the cloud comes from running multiple nodes in a split-combine-apply strategy. Data systems such as the Earth Observing System Data and Information System are in a position to "pre-split" the data by storing them in a data store that is optimized for data parallel computing, i.e., an Analytics-Optimized Data Store (AODS). A variety of approaches to AODS are possible, from highly scalable databases to scalable filesystems to data formats optimized for cloud access (e.g., zarr and cloud-optimized datasets), with the optimal choice dependent on both the types of analysis and the geospatial structure of the data. A key question is how much preprocessing of the data to do, both before splitting and as the first part of the apply step. Again, the geospatial structure of the data and the analysis type influence the decision, with the added complexity of the user type. Trans-disciplinary users who are not well-versed in the nuances of quality-filtering and georeferencing of remote sensing orbit/swath/scene data tend to ask for more highly processed data, relying on the data provider to make sensible decisions on preprocessing parameters. (This accounts for the popularity of "Level 3" gridded data, despite the lower spatial resolution it provides.) In this case, data can be preprocessed before the split, resulting in higher performance in the rest of the "apply" step, which can be transformative for use cases such as interactive data exploration at scale. Discipline researchers who are experienced with remote sensing data often prefer more flexibility in customizing the preprocessing data into Analysis Ready Data, resulting in more need for on-the-fly preprocessing.
Lynnes, Christopher↗
Transforming NASA Earth Science Data Systems: A Journey from Big Earth Data Initiative (BEDI) to Open-Source Science Initiative (OSSI)
NASA's Earth Science Data and Information Systems (ESDIS) have undergone a significant evolution, particularly with the introduction of the Big Earth Data Initiative (BEDI) and the Open-Source Science Initiative (OSSI). In this talk, I will provide an overview of NASA's Earth Science Data and Information systems, highlighting key components such as EOSDIS, ESDIS, and ESDS. Moving forward, I will delve into the BEDI initiative, discussing its objectives, key players, and lessons learned. The second part of the talk will cover the OSSI initiative, exploring its objectives, strategy, and innovative solutions. Throughout the presentation, I will provide insights into the requests, strategies, and solutions behind both BEDI and OSSI. By the end, you will gain a comprehensive understanding of how NASA's Earth Science Data Systems have evolved over the years and witness the organization's commitment to advancing an open-source and collaborative approach to data science. Join me for an enlightening exploration into the future of Earth science data and the pivotal role played by NASA in shaping this transformative landscape.
Jennifer Wei↗
NASA Earth Science Data Systems Evolution from Big Earth Data Initiative (BEDI) to Open-Source Science Initiative (OSSI)
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Jennifer Wei↗
Addressing the Big-Earth-Data Variety Challenge with the Hierarchical Triangular Mesh
We have implemented an updated Hierarchical Triangular Mesh (HTM) as the basis for a unified data model and an indexing scheme for geoscience data to address the variety challenge of Big Earth Data. We observe that, in the absence of variety, the volume challenge of Big Data is relatively easily addressable with parallel processing. The more important challenge in achieving optimal value with a Big Data solution for Earth Science (ES) data analysis, however, is being able to achieve good scalability with variety. With HTM unifying at least the three popular data models, i.e. Grid, Swath, and Point, used by current ES data products, data preparation time for integrative analysis of diverse datasets can be drastically reduced and better variety scaling can be achieved. In addition, since HTM is also an indexing scheme, when it is used to index all ES datasets, data placement alignment (or co-location) on the shared nothing architecture, which most Big Data systems are based on, is guaranteed and better performance is ensured. Moreover, our updated HTM encoding turns most geospatial set operations into integer interval operations, gaining further performance advantages.
SciDB↗
Big Earth Data Initiative: Metadata Improvement: Case Studies
Big Earth Data Initiative (BEDI) The Big Earth Data Initiative (BEDI) invests in standardizing and optimizing the collection, management and delivery of U.S. Government's civil Earth observation data to improve discovery, access use, and understanding of Earth observations by the broader user community. Complete and consistent standard metadata helps address all three goals.
BEDI↗
Climatespark: an In-Memory Distributed Computing Framework for Big Climate Data Analytics
The unprecedented growth of climate data creates new opportunities for climate studies, and yet big climate data pose a grand challenge to climatologists to efficiently manage and analyze big data. The complexity of climate data content and analytical algorithms increases the difficulty of implementing algorithms on high performance computing systems. This paper proposes an in-memory, distributed computing framework, ClimateSpark, to facilitate complex big data analytics and time-consuming computational tasks. Chunking data structure improves parallel I/O efficiency, while a spatiotemporal index is built for the chunks to avoid unnecessary data reading and preprocessing. An integrated, multi-dimensional, array-based data model (ClimateRDD) and ETL operations are developed to address big climate data variety by integrating the processing components of the climate data lifecycle. ClimateSpark utilizes Spark SQL and Apache Zeppelin to develop a web portal to facilitate the interaction among climatologists, climate data, analytic operations and computing resources (e.g., using SQL query and Scala/Python notebook). Experimental results show that ClimateSpark conducts different spatiotemporal data queries/analytics with high efficiency and data locality. ClimateSpark is easily adaptable to other big multiple- dimensional, array-based datasets in various geoscience domains.
Hu, Fei↗
Future of Big Earth Data Analytics
The state of the art of Big Earth Data Analytics can be expected to evolve rapidly in the coming years. The forces driving evolution come from both growth in the data and advancement in the field of data analytics. In the data area, advances in sensor instrumentation and platform miniaturization are increasing both data resolution and coverage, resulting in enormous growth in data Volume. Increases in temporal resolution in particular also generate demands for higher data Velocity. At the same time, the proliferation of instruments and the platforms on which they reside is increasing the Variety of datasets. The Variety increase in turn leads to questions about the Veracity of the data. In the algorithm area, powerful machine learning methods are coming to the fore, particularly Deep Neural Networks. These are powerful at detecting interesting features in the data, integrating many different measurements (i.e., data fusion), and classification problems. However, they are still challenging when seeking explanations of how natural or socio-economic phenomena work using Earth Observations. Thus, classical analysis techniques will remain relevant when the emphasis is on forming or testing explanations, as well as to support interactive data exploration.
Lynnes, Christopher↗
Big lunar data visualization and analysis
NASA's earth and planetary spacecraft return large amounts of remote sensing data, such as imagery and raw science measurements, in support of remarkable research. Not only does the data lead to new scientific discoveries about our planet and the solar system, it provides a wealth of information to educate, inspire, and engage the public at large. To leverage this rich data for mission planning, scientific research, public outreach and education, it is essential to make it accessible and understandable, analyzable, all while appealing to their interests. This presentation will highlight web-based capabilities that showcase NASA's large volume of lunar data collected from past and current Moon missions. It is particularly relevant as the new Administration has more plans for the Moon. We will illustrate big data visualization and analysis in easy-touse and interactive mediums for diverse use.
Malhotra, Shan↗
Earth Science Data Fusion with Event Building Approach
Objectives of the NASA Information And Data System (NAIADS) project are to develop a prototype of a conceptually new middleware framework to modernize and significantly improve efficiency of the Earth Science data fusion, big data processing and analytics. The key components of the NAIADS include: Service Oriented Architecture (SOA) multi-lingual framework, multi-sensor coincident data Predictor, fast into-memory data Staging, multi-sensor data-Event Builder, complete data-Event streaming (a work flow with minimized IO), on-line data processing control and analytics services. The NAIADS project is leveraging CLARA framework, developed in Jefferson Lab, and integrated with the ZeroMQ messaging library. The science services are prototyped and incorporated into the system. Merging the SCIAMACHY Level-1 observations and MODIS/Terra Level-2 (Clouds and Aerosols) data products, and ECMWF re- analysis will be used for NAIADS demonstration and performance tests in compute Cloud and Cluster environments.
Lukashin, C.↗
Investigating Access Performance of Long Time Series with Restructured Big Model Data
Data sets generated by models are substantially increasing in volume, due to increases in spatial and temporal resolution, and the number of output variables. Many users wish to download subsetted data in preferred data formats and structures, as it is getting increasingly difficult to handle the original full-size data files. For example, application research users such as those involved with wind or solar energy, or extreme weather events are likely only interested in daily or hourly model data at a single point (or for a small area) for a long time period, and prefer to have the data downloaded in a single file. With native model file structures, such as hourly data from NASA Modern-Era Retrospective analysis for Research and Applications Version-2 (MERRA-2), it may take over 10 hours for the extraction of parameters-of-interest at a single point for 30 years. The NASA Goddard Earth Sciences Data and Information Services Center (GES DISC) is exploring methods to address this particular user need. One approach is to create value-added data by reconstructing the data files. Taking MERRA-2 data as an example, we have tested converting hourly data from one-day-per-file into different data cubes, such as one-month, or one-year. Performance is compared for reading local data files and accessing data through interoperable services, such as OPeNDAP. Results show that, compared to the original file structure, the new data cubes offer much better performance for accessing long time series. We have noticed that performance is associated with the cube size and structure, the compression method, and how the data are accessed. An optimized data cube structure will not only improve data access, but also may enable better online analysis services
reanalysis↗
Modern Scientific Data Governance Framework
Science has entered the era of Big Data with new challenges related to data governance, stewardship, and management. The existing data governance practices must catch up to ensure proper data management. Existing data governance policies and stewardship best practices tend to be disconnected from operational data management practices and enforcement and mainly exist in well-meaning documents or reports. These governance policies are, at best, partially implemented and rarely monitored or audited. In addition, existing governance policies keep adding additional data management steps that require a human, ‘a data steward’, in the loop, and the cost of data management can no longer scale proportionately with the current and future increased data volume and complexity. The goal for developing an updated data governance framework is to modernize scientific data governance to the reality of Big data and align it with the current technology trends such as cloud computing and AI. The goals of this framework are two folds. One is to ensure thoroughness that the governance adequately covers the entire data life cycle. Two, provide a practical approach that offers a consistent and repeatable process for different projects. Three core principles ground this framework. First, focus on just enough governance and prevent data governance from becoming a roadblock toward the scientific process. Remove any unnecessary processes and steps. Second, automate data management steps where possible. Actively remove steps that require ‘human in the loop’ within the management process to be efficient and scale with increasing data. Third, all the processes should continually be optimized using quantified metrics to streamline the monitoring and auditing workflows.
Rahul Ramachandran↗
Open Energy Data Initiative (OEDI) FY22-24 (Final Technical Report)
Final technical report for the Open Energy Data Initiative (OEDI) project covering fiscal years FY22 through FY24. The DOE Open Energy Data Initiative (OEDI) is a partnership between the National Renewable Energy Laboratory (NREL), the U.S. Department of Energy (DOE), and major cloud providers including Amazon, Microsoft, and Google to provide universal access to big data in the cloud. At the heart of OEDI is a centralized repository of high-value energy research datasets aggregated from the U.S. Department of Energy's Program Offices, National Laboratories and other collaborators. It aggregates smaller, domain-specific repositories, allows direct data submissions, and includes support for big data through its energy data lakes. OEDI's data lakes make high-value data universally accessible and help researchers, collaborators and the general public overcome many of the obstacles to accessing and using big data.
29 ENERGY PLANNING, POLICY, AND ECONOMY↗
Open Source Application of Fusing Aerosol Products from GEO and LEO Satellites
Retrieving aerosol optical depths (AODs) from sun-synchronous polar orbiting (aka low earth orbit, LEO) satellites, such as MODISs, and VIIRSs, OMI, TROPOMI, etc, has become well-established as a tool for extracting information on particulate matter (PM) and related processes in the atmosphere. However, with recently launched geostationary satellites (GEO), such as GOES-16/17/18, and Himawari-8/9, and Meteosat Third Generation (MTG) they provide a much higher temporal resolution (order of 10 minutes), typically an image once or more per hour during daylight compared to LEO once per day. By combining these observations, we may be able to characterize the diurnal cycle of global AOD at the local, regional and global scale. While the science community is still exploring the new data from GEO observations, we have been thinking about how to properly combine/merge/fuse those data considering differences in their spatial and temporal resolutions. However, this poses a “Big Data” challenge. The big data challenge is not just about data storage, but also about data discoverability, and accessibility, and even more, about data migration/mirroring in the cloud-computing environment. This paper is merely showing some of the efforts and approaches we have attempted in fusing six satellites’ Level 2 aerosol data (three are from GEO (GOES-16/17 and Himawari-8), and the other three are from LEO (TERRA/MODIS, AQUA/MODIS, SNPP-VIIRS) from Dark Target (DT) aerosol retrieval algorithm. Having the on-demand capability of fusing remote sensing products onto the desired temporal and spatial domain enables researchers and application practitioners to better manipulate and work with satellite and sensor data. It is our hopeWe hope that by making such an open-source package, and the accompanying functionality, the scientific community will be granted easier access to aerosol data processing resources. The MEaSUREs Program (Making Earth System Data Records for Use in Research Environments) expands our understanding of the Earth's current system through atmospheric and surface measurements. In an effort to aid the scientific research component and improve open source methods, this project developed Python code for fusing six satellite Level 2 aerosol data (three are from geostationary satellites (GEO), and the other three are from low earth orbital satellites (LEO)) from Dark Target Aerosol Retrieval Algorithm.
Jennifer Wei↗
Advanced Analytics and Big Earth Data
NASA's Earth Science Data Systems process, archive and distribute petabytes of Earth Observation data to a variety of end users. These end users will face dramatically increased data size in the near future, bringing about new challenges and opportunities in analyzing those data. One area of particular ferment currently is Machine Learning. Many Machine Learning methods are black boxes, limiting direct insight into the data's properties. However, they can be used for a variety of data enhancement purposes, such as parameter retrieval, data fusion and image classification and segmentation. The Earth Observing System Data and Information System is also evolving to host large data volumes in the cloud, enabling data proximal analysis. As part of this effort, an Analytics framework is being developed to support and enhance user analysis of the data. By using standards based services in the framework, diverse user communities can be served, while also allowing inter-system collaboration in the analysis process.
Cloud Computing↗
NASA GES DISC New Data Service and Data Management for the Air Quality Community
President Obama's Big Data Research and Development Initiative seeks to improve our ability to acquire knowledge and discover insights into large and complex collections of digital data. The Big Earth Data Initiative (BEDI) Invests in standardizing and optimizing the collection, management and delivery of U.S. Government's civil Earth observation data.
air pollution↗