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DOE OSTI2022

An algorithm for detecting and quantifying disturbance and recovery in high-frequency time series

Determining when a disturbance has occurred, its severity, and when the system recovered, is important to numerous questions in the aquatic sciences. This problem can be conceptualized as the timing and degree of perturbation from a typical state, and when the system returns to that typical state. We present an algorithm for detecting disturbance and recovery designed for high-frequency time series, e.g., data produced by automated sampling devices in instrumented buoys and flux towers. The algorithm quantifies differences in the empirical cumulative distribution functions of moving windows over reference and evaluation periods, and is sensitive to changes in the mean, variance, and higher statistical moments. Tests on simulated data show it accurately identifies disturbance and recovery. Three case studies illustrate the application of our algorithm in different empirical settings. A case study on dissolved oxygen in a Florida, USA estuary following a hurricane identified the disturbance and recovery 73 d later. A case study on air temperature and net ecosystem exchange in the Florida everglades identified cold snaps coinciding with periods of reduced carbon uptake. A case study on rotifer abundance following zebra mussel invasion in the Hudson River, NY showed rotifer collapse following invasion and recovery over a decade later. Methods such as ours can improve understanding response to disturbance and facilitate comparative and synthetic study of disturbance impacts across ecosystems.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Effects of random forest modeling decisions on biogeochemical time series predictions

Abstract Random forests (RF) are an increasingly popular machine learning approach used to model biogeochemical processes in the Earth system. While RF models are robust to many assumptions that complicate deterministic models, there are several important parameterization decisions for appropriate use and optimal model fit. We explored the role that parameter decisions, including training/testing data splitting strategies, variable selection, and hyperparameters play on RF goodness‐of‐fit by constructing models using 1296 unique parameter combinations to predict concentrations of nitrate, a key nutrient for biogeochemical cycling in aquatic ecosystems. Models were built on long‐term, publicly available water quality and meteorology time series collected by the National Estuarine Research Reserve monitoring network for two contrasting ecosystems representing freshwater and brackish estuaries. We found that accounting for temporal dependence when splitting data into training and testing subsets was key for avoiding over‐estimation of model predictive power. In addition, variable selection, the ratio of training to testing data, and to a lesser degree, variables per split and number of trees, were significant parameters for optimizing RF goodness‐of‐fit. We also explored how model parameter decisions influenced interpretation of the relative importance of predictors to the model, and model predictor‐dependent variable relationships, with results suggesting that both data structure and model parameterization influence these factors. Because much of the current RF literature is written for the computational and statistical science communities, the primary goal of this study is to provide guidelines for aquatic scientists new to machine learning to apply RF techniques appropriately to aquatic biogeochemical datasets.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2024

One hundred priority questions for advancing seagrass conservation in Europe

Societal Impact Statement Seagrass ecosystems are of fundamental importance to our planet and wellbeing. Seagrasses are marine flowering plants, which engineer ecosystems that provide a multitude of ecosystem services, for example, blue foods and carbon sequestration. Seagrass ecosystems have largely been degraded across much of their global range. There is now increasing interest in the conservation and restoration of these systems, particularly in the context of the climate emergency and the biodiversity crisis. The collation of 100 questions from experts across Europe could, if answered, improve our ability to conserve and restore these systems by facilitating a fundamental shift in the success of such work. Summary Seagrass meadows provide numerous ecosystem services including biodiversity, coastal protection, and carbon sequestration. In Europe, seagrasses can be found in shallow sheltered waters along coastlines, in estuaries & lagoons, and around islands, but their distribution has declined. Factors such as poor water quality, coastal modification, mechanical damage, overfishing, land‐sea interactions, climate change and disease have reduced the coverage of Europe’s seagrasses necessitating their recovery. Research, monitoring and conservation efforts on seagrass ecosystems in Europe are mostly uncoordinated and biased towards certain species and regions, resulting in inadequate delivery of critical information for their management. Here, we aim to identify the 100 priority questions, that if addressed would strongly advance seagrass monitoring, research and conservation in Europe. Using a Delphi method, researchers, practitioners, and policymakers with seagrass experience from across Europe and with diverse seagrass expertise participated in the process that involved the formulation of research questions, a voting process and an online workshop to identify the final list of the 100 questions. The final list of questions covers areas across nine themes: Biodiversity & Ecology; Ecosystem services; Blue carbon; Fishery support; Drivers, Threats, Resilience & Response; Monitoring & Assessment; Conservation & Restoration; Governance, Policy & Management; and Communication. Answering these questions will fill current knowledge gaps and place European seagrass onto a positive trajectory of recovery.

Nordlund, Lina Mtwana↗

DOE OSTI2022

Mass removal efficiencies in water and consequences after a river diversion into coastal wetlands: second thoughts

Abstract Salinity control, nutrient additions, and sediment supply were directly or indirectly the rationale for a $220 million coastal wetland restoration project (Davis Pond River Diversion) that began in 2002. We sampled Mississippi River water going in and out of the receiving basin from 1999 to 2018 to understand why wetland loss increased after it began. There was a reduction in inorganic sediments, nitrogen (N), and phosphorus (P) concentrations within the ponding area of 77%, 39% and 34%, respectively, which is similar to that in other wetlands. But the average sediment accumulation of 0.6 mm year −1 inadequately balances the present-day 5.6 mm year −1 sea level rise or the 7.9 ± 0.13 mm year −1 accretion rates in these organic soils. Nutrients added likely reduced live belowground biomass and soil strength, and increased decomposition of the organic matter necessary to sustain elevations. The eutrophication of the downstream aquatic system from the diversion, principally by P additions, increased Chl a concentrations to a category of ‘poor’ water quality. We conclude that this diversion, if continued, will be a negative influence on wetland area and will eutrophy the estuary. It is a case history example for understanding the potential effects arising from proposed river diversions.

Turner, R. Eugene (ORCID:0000000307767506)↗

DOE OSTI2022

A Conterminous USA-Scale Map of Relative Tidal Marsh Elevation

Abstract Tidal wetlands provide myriad ecosystem services across local to global scales. With their uncertain vulnerability or resilience to rising sea levels, there is a need for mapping flooding drivers and vulnerability proxies for these ecosystems at a national scale. However, tidal wetlands in the conterminous USA are diverse with differing elevation gradients, and tidal amplitudes, making broad geographic comparisons difficult. To address this, a national-scale map of relative tidal elevation ( Z * MHW ), a physical metric that normalizes elevation to tidal amplitude at mean high water (MHW), was constructed for the first time at 30 × 30-m resolution spanning the conterminous USA. Contrary to two study hypotheses, watershed-level median Z * MHW and its variability generally increased from north to south as a function of tidal amplitude and relative sea-level rise. These trends were also observed in a reanalysis of ground elevation data from the Pacific Coast by Janousek et al. (Estuaries and Coasts 42 (1): 85–98, 2019). Supporting a third hypothesis, propagated uncertainty in Z * MHW increased from north to south as light detection and ranging (LiDAR) errors had an outsized effect under narrowing tidal amplitudes. The drivers of Z * MHW and its variability are difficult to determine because several potential causal variables are correlated with latitude, but future studies could investigate highest astronomical tide and diurnal high tide inequality as drivers of median Z * MHW and Z * MHW variability, respectively. Watersheds of the Gulf Coast often had propagated Z * MHW uncertainty greater than the tidal amplitude itself emphasizing the diminished practicality of applying Z * MHW as a flooding proxy to microtidal wetlands. Future studies could focus on validating and improving these physical map products and using them for synoptic modeling of tidal wetland carbon dynamics and sea-level rise vulnerability analyses.

Holmquist, James R. (ORCID:0000000325466766)↗

DOE OSTI2024

A Fresh Take: Seasonal Changes in Terrestrial Freshwater Inputs Impact Salt Marsh Hydrology and Vegetation Dynamics

Abstract Salt marshes exist at the terrestrial-marine interface, providing important ecosystem services such as nutrient cycling and carbon sequestration. Tidal inputs play a dominant role in salt marsh porewater mixing, and terrestrially derived freshwater inputs are increasingly recognized as important sources of water and solutes to intertidal wetlands. However, there remains a critical gap in understanding the role of freshwater inputs on salt marsh hydrology, and how this may impact marsh subsurface salinity and plant productivity. Here, we address this knowledge gap by examining the hydrologic behavior, porewater salinity, and pickleweed ( Sarcocornia pacifica also known as Salicornia pacifica) plant productivity along a salt marsh transect in an estuary along the central coast of California. Through the installation of a suite of hydrometric sensors and routine porewater sampling and vegetation surveys, we sought to understand how seasonal changes in terrestrial freshwater inputs impact salt marsh ecohydrologic processes. We found that salt marsh porewater salinity, shallow subsurface saturation, and pickleweed productivity are closely coupled with elevated upland water level during the winter and spring, and more influenced by tidal inputs during the summer and fall. This seasonal response indicates a switch in salt marsh hydrologic connectivity with the terrestrial upland that impacts ecosystem functioning. Through elucidating the interannual impacts of drought on salt marsh hydrology, we found that the severity of drought and historical precipitation can impact contemporary hydrologic behavior and the duration and timing of the upland-marsh hydrologic connectivity. This implies that the sensitivity of salt marshes to climate change involves a complex interaction between sea level rise and freshwater inputs that vary at seasonal to interannual timescales.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2022

Impacts of climate change on estuarine stratification and implications for hypoxia within a shallow subtropical system

Vertical density stratification often plays an important role in the formation and expansion of coastal hypoxic zones through its effect on near-bed circulation and vertical oxygen flux. However, the impact of future climate change on estuarine circulation is widely unknown. Here, we developed and calibrated a three-dimensional hydrodynamic model for Pensacola Bay, a shallow subtropical estuary in the northeastern Gulf of Mexico. Model simulations based on years 2013–2017 were applied to examine changes in salinity, temperature, and density under future climate scenarios, including increased radiative forcing (IR) and temperature (T), increased freshwater discharge (D), sea level rise (SLR), and wind intensification (W). Simulations showed that the impacts of climate change on modeled state variables varied over time with external forcing conditions. The model demonstrated the potential for sea level rise and increased freshwater discharge to episodically increase vertical density gradients in the Bay. However, increased wind forcing destabilized vertical gradients, at times reducing the spatial extent and duration of stable stratification. For time periods with low freshwater discharge, moderate increases in wind speed (10%) can destabilize density gradients strengthened by increased discharge (10%) and sea level rise (0.48 m). In contrast, destruction of strong density gradients that form near the mid-Bay channel following flood events requires stronger wind forcing. Furthermore, these results highlight the importance of considering natural variability in freshwater and wind forcing, as well as local phenomena that are generally unresolved by global climate models.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Supporting cost-effective watershed management strategies for Chesapeake Bay using a modeling and optimization framework

Extensive efforts to adaptively manage nutrient pollution rely on Chesapeake Bay Program’s (Phase 6) Watershed Model, called Chesapeake Assessment Scenario Tool (CAST), which helps decision-makers plan and track implementation of Best Management Practices (BMPs). We describe mathematical characteristics of CAST and develop a constrained nonlinear BMP-subset model, software, and visualization framework. This represents the first publicly available optimization framework for exploring least-cost strategies of pollutant load control for the United States’ largest estuary. The optimization identifies implementation options for a BMP subset modeled with load reduction effectiveness factors, and the web interface facilitates interactive exploration of >30,000 solutions organized by objective, nutrient control level, and for ~200 counties. We assess framework performance and demonstrate modeled cost improvements when comparing optimization-suggested proposals with proposals inspired by jurisdiction plans. Stakeholder feedback highlights the framework’s current utility for investigating cost-effective tradeoffs and its usefulness as a foundation for future analysis of restoration strategies.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2023

Inverse aqueous transport modeling for emergency response

ALGE is a three-dimensional, finite-difference aqueous transport model that simulates pollutant fate and transport in lakes, rivers, bays, and estuaries by solving the prognostic equations of mass, momentum, and energy. Its current modeling capabilities include transport of dissolved tracer for a series of predefined basins across the continental United States. Recently, an inverse method (also known as backtracking) has been added to ALGE to provide a possible source of a pollutant should one be detected by a sensor in a body of water and a source is not known. This inverse method is a three step process that uses an algorithm to inverse the flow. We demonstrate the new model’s capabilities through simulating the 2021 Piney Point spill in Tampa Bay, Florida (USA). This involves moving tracer backwards from its detection points, encompassing a potential source area, and applying Bayes’ Theorem and $\frac{𝜒}{𝑄}$ to reduce the area within which the true source could be located.

hydrological modeling↗

DOE OSTI2021

Effects of salinity and nutrients on metabolism and growth of Ulva lactuca : Implications for bioremediation of coastal watersheds

We studied Ulva lactuca to determine its potential for bioremediation of coastal watersheds. We cultured Ulva in orthogonal combinations of two salinities and three nutrient concentrations for six weeks, and then measured its growth, photosynthesis, chlorophyll fluorescence, nitrogen, carbon and phosphorus tissue concentrations, and carbon and nitrogen uptake pathways. Our findings show that Ulva was negatively affected by decreased salinity but these effects were ameliorated by the addition of nutrients to the water, such as would be expected from freshwater runoff during heavy rain events. Also, increased nutrients resulted in altered nitrogen (NH$_4^ +$ vs. NO$_3^-$) and carbon (HCO$_3^-$ vs. CO 2 ) uptake pathways, which can allow Ulva to retain its bloom potential even under reduced salinities. Together, our study suggests that Ulva is an ideal species to grow for the purpose of bioremediation of coastal bays and estuaries, even during storms that freshen the surface waters and increase nutrients.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2021

Tidal Stream Energy Resource Characterization in the Salish Sea

Tidal stream energy holds great potential as a renewable energy source in regions of the world where tidal currents are strong and predictable. The tidal stream energy resource of a region is strongly controlled by its tidal wave characteristics, the local bathymetry, and coastal geometric features. The Salish Sea, a large estuary on the Pacific Northwest coast, represents a great tidal stream resource because of its strong tidal currents in many tidal channels. However, the tidal resource in the Salish Sea has not been systematically characterized, primarily because of its large area and complex bathymetry and coastlines. This paper presents a modeling study conducted to characterize the tidal energy resource of the Salish Sea based on a high-resolution three-dimensional tidal hydrodynamic model of the Salish Sea, which was extensively validated using data derived from 10 tidal gauge stations and 132 Acoustic Doppler Current Profiler stations. Model validation results indicated the Salish Sea hydrodynamic model is skillful in simulating tidal wave propagation and velocity distributions in the Salish Sea. Based on model results, a total of 16 tidal channels with strong tidal currents, 9 in the San Juan Islands and Rosario Strait regions and 7 in the Puget Sound, were identified as hotspots for potential tidal energy development. Velocity probability distributions and exceedance curves of cross-channel average velocity magnitudes were calculated at all 16 channels based on the recommendations of the International Electrotechnical Commission Technical Specifications for tidal energy resource characterization. The tidal energy resource at the 16 hotspots was also characterized using power density distributions and kinetic energy fluxes. The ranking of the kinetic energy fluxes suggested that Admiralty Inlet, Rosario Strait, and Middle Channel are the top three hotspot sites in the Salish Sea for tidal stream energy development. The study demonstrated the need for a high-resolution 3-D modeling framework for accurate simulation of tidal currents in large complex estuarine systems, in the context of tidal energy resource characterization.

tidal stream energy, resource characterization, Sa↗

DOE OSTI2021

Climate Change and Changes in Compound Coastal-Riverine Flooding Hazard Along the U.S. Coasts

The cooccurrence of coastal and riverine flooding leads to compound events with substantial impacts on people and property in low-lying coastal areas. Climate change could increase the level of compound flood hazard through higher extreme sea levels and river flows. Here, a bivariate flood hazard assessment method is proposed to estimate compound coastal-riverine frequency under current and future climate conditions. A copula-based approach is used to estimate the joint return period (JRP) of compound floods by incorporating sea-level rise (SLR) and changes in peak river flows into the marginal distributions of flood drivers. Specifically, the changes in JRP of compound major coastal-riverine flooding defined based on simultaneous exceedances above major coastal and riverine thresholds, are explored by midcentury. Subsequently, the increase in the probability of occurrence of at least one compound major coastal-riverine flooding for a given period of time is quantified. The proposed compound flood hazard assessment is conducted at 26 paired tidal-riverine stations along the Contiguous United States coast with long-term data and defined flood thresholds. We show that the northeast Atlantic and the western part of the Gulf coasts are experiencing the highest compound major coastal-riverine flood probability under current conditions. However, future SLR scenarios show the highest frequency amplification along the southeast Atlantic coast. The impact of changes in peak river flows is found to be considerably less than that of SLR. Climate change impacts, especially SLR, may lead to more frequent compound events, which cannot be ignored for future adaptation responses in estuary regions.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2025

Can Restoring Tidal Wetlands Reduce Estuarine Nuisance Flooding of Coasts Under Future Sea‐Level Rise?

Wetland restoration is an increasingly popular nature‐based method for flood risk mitigation in coastal communities. In this study, we present a novel method using hydrodynamic modeling and harmonic analysis to quantify wetlands' ability to reduce future nuisance flooding. The method leverages a hydrodynamic model calibrated to present day data and was run for a range of future sea‐level rise (SLR) and wetland restoration scenarios to quantify changes to tidal harmonic amplitudes and phases. The harmonic constituents are used to generate water surface elevations over a time period of interest (e.g., one year) and compared to critical exceedance thresholds such as levee elevations. Then, changes to nuisance flooding are calculated by counting the number of hours critical thresholds are exceeded under different SLR and wetland restoration scenarios. We applied the method to Coos Bay, Oregon, USA as a test case. We found restoration reduces the number of hours nuisance flooding occurs in downtown Coos Bay from 15 hr (present day conditions) to 0 hr (fully restored condition) under median SLR (82 cm by 2100). Restoration had spatially variable impacts on reducing peak flood elevations with minimal impacts near the estuary mouth and greatest impact 32 km inland. The effectiveness of restoration was heavily dependent on future SLR. Restoration was maximally effective in 2050 under all SLR scenarios, less effective in 2100 under median SLR, and not effective under high SLR. Modeling results suggest increased tidal prism and accommodation space are driving restoration‐associated reductions in tidal amplitudes.

Brand, Matthew W. [Louisiana State Univ., Baton Ro↗

DOE OSTI2024

On the Sensitivity of Coastal Hypoxia to Its External Physical Forcings

Abstract The development of low‐oxygen zones threatening marine life (hypoxia) occurs annually in multiple coastal regions of the world. The largest estuary of the continental United States, the Chesapeake Bay, typically has ≈10 km 3 of water with dioxygen concentrations <3 mg L −1 in July. As numerical methods for refining model resolutions in targeted areas are becoming common, there is interest in assessing the feasibility of simulating coastal hazards such as hypoxia in Earth System Models (ESMs). These coupled models are typically not constrained by observations and thus likely to feature systematic biases in their land, atmosphere, or ocean components. This study relies on four numerical experiments to evaluate the sensitivity of Chesapeake Bay hypoxia to changes or biases in its external physical forcings. Hypoxia exhibits only a minor decrease (−1.6%) after reducing the Bay's terrestrial freshwater discharge by 9.5% (but keeping terrestrial nutrient loadings the same). Changes in freshwater discharges have their largest impact on hypoxia during one extreme event (−37% during 2011 tropical storm Lee). Similarly, changing oceanic conditions on the shelf or their temporal frequency impact hypoxia by only 5%–6%, indicating that the latter is predominantly dictated by local conditions. Although these results are promising from the perspective of ESMs, additional components of ESMs will need to be evaluated before general conclusions can be reached. We notably speculate that the Bay's hypoxia would exhibit higher sensitivity to other forcings not examined here, notably air temperatures and nutrient loadings.

Meteorology & Atmospheric Sciences↗

DOE OSTI2025

Blue Carbon Stocks Along the Pacific Coast of North America Are Mainly Driven by Local Rather Than Regional Factors

Coastal wetlands, including seagrass meadows, emergent marshes, mangroves, and temperate tidal swamps, can efficiently sequester and store large quantities of sediment organic carbon (SOC). However, SOC stocks may vary by ecosystem type and along environmental or climate gradients at different scales. Quantifying such variability is needed to improve blue carbon accounting, conservation effectiveness, and restoration planning. We analyzed SOC stocks in 1,284 sediment cores along >6,500 km of the Pacific coast of North America that included large environmental gradients and multiple ecosystem types. Tidal wetlands with woody vegetation (mangroves and swamps) had the highest mean stocks to 1 m depth (357 and 355 Mg ha −1 , respectively), 45% higher than marshes (245 Mg ha −1 ), and more than 500% higher than seagrass (68 Mg ha −1 ). Unvegetated tideflats, though not often considered a blue carbon ecosystem, had noteworthy stocks (148 Mg ha −1 ). Stocks increased with tidal elevation and with fine (<63 μm) sediment content in several ecosystems. Stocks also varied by dominant plant species within individual ecosystem types. At larger scales, marsh stocks were lowest in the Sonoran Desert region of Mexico, and swamp stocks differed among climate zones; otherwise stocks showed little correlation with ecoregion or latitude. More variability in SOC occurred among ecosystem types, and at smaller spatial scales (such as individual estuaries), than across regional climate gradients. These patterns can inform coastal conservation and restoration priorities across scales where preserving stored carbon and enhancing sequestration helps avert greenhouse gas emissions and maintains other vital ecosystem services.

emergent marsh↗

DOE OSTI2024

Enhanced Cross-Shelf Exchange by the Eddies Associated With Plume Front

Broadened width of high chlorophyll concentration band with wavy structures, patches, and filaments are often observed along the western coastal next to the Pearl River Estuary over the northern South China Sea shelf during the transition period from winter to summer monsoon. Whereas, there is no such wide band in other seasons. By using a high-resolution numerical model, we reveal that the complex structure and wider band of high coastal chlorophyll concentration results from the smaller scale eddies (about 20–50 km in diameter) associated with buoyant plume-induced salinity front and density fronts, which are roughly along the 30 and 50 m isobaths, respectively. Two trains of eddies are formed along the fronts by the baroclinic instability triggered by frequently alternating winds over the fronts during the period of monsoon transition. The influences of these two trains of eddies are extended in the cross-shelf direction by their interactions, and they can temporally enhance the cross-shelf flow and material exchange. In conclusion, they serve as an efficient pathway to link the inner shelf toward the continental slope.

54 ENVIRONMENTAL SCIENCES↗

DOE OSTI2026

Inundation and Sediment Supply Predict Annual but Not Centennial Carbon Accumulation in Tidal Wetlands Across Land‐Use Types

Despite growing interest in the contributions of tidal wetlands to natural climate solutions, data remain scarce on how land use affects their carbon accumulation rates (CAR). Additionally, environmental factors driving the large observed variability in CAR among sites are poorly understood. To address these knowledge gaps, we measured short-term (∼1 year) and long-term (∼100 years) CAR using feldspar marker horizons, 210 Pb profiles, and surface elevation tables from 39 sites in seven estuaries in Oregon and Washington, USA. Sites varied in wetland type (tidal marsh, tidal swamp, nontidal pasture), land-use history (reference, restored, and disturbed), and salinity (fresh to polyhaline). Across both timescales, CAR was lowest in disturbed pastures and highest in restored marshes, reflecting patterns in sediment accretion rates. Short-term CAR exceeded long-term CAR by approximately 50% on average and was only weakly correlated with long-term CAR, with differences among hydrogeomorphic setting. Short-term CAR was well predicted by summer inundation frequency and relative sediment load, together explaining 60% of variance, whereas long-term CAR was poorly predicted by contemporary environmental conditions. These findings highlight the importance of aligning predictor and response timescales when modeling blue carbon dynamics, and reinforce the climate mitigation potential of tidal wetland restoration.

land use and land cover change↗

DOE OSTI2022

Environmental RNA as a Tool for Marine Community Biodiversity Assessments

Abstract Microscopic organisms are often overlooked in traditional diversity assessments due to the difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly identifying organisms where Environmental DNA (eDNA) is used as a template. However, legacy DNA is problematically detected from organisms no longer in the environment during sampling. Environmental RNA (eRNA), which is only produced by living organisms, can also be collected from environmental samples and used for metabarcoding. The aim of this study was to determine differences in community composition and diversity between eRNA and eDNA templates for metabarcoding. Using mesocosms containing field-collected communities from an estuary, RNA and DNA were co-extracted from sediment, libraries were prepared for two loci (18S and COI), and sequenced using an Illumina MiSeq. Results show a higher number of unique sequences detected from eRNA in both markers and higher α-diversity compared to eDNA. Significant differences between eRNA and eDNA for all β-diversity metrics were also detected. This study is the first to demonstrate community differences detected with eRNA compared to eDNA from an estuarine system and illustrates the broad applications of eRNA as a tool for assessing benthic community diversity, particularly for environmental conservation and management applications.

Giroux, Marissa S.↗