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At least 1,045 records · Page 58

Data from: Crop-associated virus infection in a native perennial grass: reduction in plant fitness and dynamic patterns of virus detection

To understand the eco-evolutionary significance of plant viruses in nature, we must (i) quantify the effects of infection on plant fitness and (ii) recognize that native plants are increasingly exposed to crop-associated viruses. Studies of perennials are particularly needed: most of our knowledge of plant-virus interactions is from annuals, yet long-lived species dominate landscapes. Here we used aster models for life-history analysis and longitudinal measures of plant virus status to evaluate multi-year consequences of crop virus infection in a native perennial. We used Barley yellow dwarf virus acquired from wheat to inoculate seedlings of Panicum virgatum L. (switchgrass), a North American prairie grass. We grew inoculated and mock-inoculated individuals of two ecotypes for 3 years in the field. We measured plant size, infection status and fitness components. Aster modelling provided integrated multi-year measures of fitness. Crop virus inoculation reduced multi-year native plant fitness by 30% over 2 years despite generally asymptomatic infection and evidence of resistance. This reduction was greater than predicted from individual fitness components or most size measures. Ecotypes differed in response, with the lowland ecotype experiencing higher apparent recovery from infection. Virus treatment in the upland ecotype delayed flowering phenology and reduced seed filling. Synthesis. Our use of field experimentation, surveys of plant infection status and aster modelling demonstrates a rigorous and broadly applicable approach for quantifying the effects of viruses and other microbes on multi-year plant fitness. We found that a crop virus had negative multi-year effects on native plant fitness even after infection was no longer detected. Viruses may have substantial effects on native vegetation with domestication of landscapes and agricultural expansion.

59 BASIC BIOLOGICAL SCIENCES↗

Data from: Ecosystem carbon exchange on conversion of Conservation Reserve Program grasslands to annual and perennial cropping systems

Land use changes into and out of agricultural production may substantially influence ecosystem carbon (C) balance for many years. We examined ecosystem C balances for eight years after the conversion of 22 year-old Conservation Reserve Program (CRP) grasslands and formerly tilled agricultural fields (AGR) to annual (continuous no-till corn) and perennial (switchgrass and restored prairie) cropland. An unconverted CRP field (CRP-Ref) was maintained as a historical reference. Ecosystem C balance was assessed using adjusted net ecosystem carbon exchange (NEEadj) calculated by adding C removed in harvested biomass to NEE measured using eddy covariance method. The cumulative NEEadj of the corn and perennial systems on former CRP fields showed that these systems were a net C source to the atmosphere over the 8-year period while on former AGR fields, the perennial systems were net C sinks and the corn system near-neutral. The CRP-Ref was near neutral until a drought year when it became a net source. The corn system on the CRP field will likely reach a new lower soil C equilibrium at least 14 years after conversion but will never regain the C lost upon conversion under current no-till management with residue partially removed. On the other hand, the perennial systems could fully regain in ~14 years the C lost following conversion. The cumulative NEEadj of the corn systems exhibited a higher C emission than did the perennial systems within the same land use histories, reflecting the dominant role of crop type and management in agricultural ecosystem C balance. Results suggest that converting croplands to grasslands results in immediate C gains whereas converting grasslands to croplands results in permanent (no-till corn with partial residue removal) or temporary (perennial herbaceous crops) net C loss to the atmosphere. This has a significant implications for global climate change mitigation where biomass production from annual and perennial crops is promoted to avoid fossil-fuel C emissions (biofuel) or to remove CO2 from the atmosphere (bioenergy C capture and storage).

54 ENVIRONMENTAL SCIENCES↗

Data from: Harvesting biofuel grasslands has mixed effects on natural enemy communities and no effects on biocontrol services

1.Perennial bioenergy systems, such as switchgrass and restored prairies, are alternatives to commonly used annual monocultures such as maize. Perennial systems require lower chemical input, provide greater ecosystem services such as carbon storage, greenhouse gas mitigation, and support greater biodiversity of beneficial insects. However, biomass harvest will be necessary in managing these perennial systems for bioenergy production, and it is unclear how repeated harvesting might affect ecosystem services. 2.In this study, we examined how repeated production-scale harvesting of diverse perennial grasslands influences vegetation structure, natural enemy communities (arthropod predators and parasitoids), and natural biocontrol services in two states (Wisconsin and Michigan, USA) over multiple years. 3.We found that repeated biomass harvest reduced litter biomass and increased bare ground cover. Some natural enemy groups, such as ground-dwelling arthropods, decreased in abundance with harvest whereas others, such as foliar-dwelling arthropods increased in abundance. The disparity in responses is likely due to how different taxonomic groups utilize vegetation and differences in dispersal abilities. 4.At the community level, biomass harvest altered community composition, increased total arthropod abundance, and decreased evenness but did not influence species richness, diversity, or biocontrol services. Harvest effects varied with time, diminishing in strength both within the season (for total abundance and evenness), across seasons (for evenness), or were consistent throughout the duration of the study (for community composition). Greater functional redundancy and compensatory responses of the different taxonomic groups may have buffered against the potentially negative effects of harvest on biocontrol services. 5.Synthesis and applications. Our results show that in the short-term, repeated harvesting of perennial grasslands (when insect activity is low) consistently altered vegetation structure but had mixed effects on natural enemy communities and no discernable effects on biocontrol services. However, the long-term effects of repeated harvesting on vegetation structure, natural enemies, and other arthropod-derived ecosystem services such as pollination and decomposition remain largely unknown.

09 BIOMASS FUELS↗

Wet Chemical Compositional and Near IR Spectra Data Sets for Biomass

Near-infrared (NIR) calibration models are created by applying multivariate calibration methods to the combination of wet chemistry data and NIR spectra of a given set of biomass samples. Wet chemical compositional data and NIR spectra exist for the following types of biomass samples: corn stover, switchgrass, mixed hardwoods, mixed softwoods, sorghum, and miscanthus. These samples may be feedstock samples, washed and dried solids from one or more pretreatment processes, liquors derived from one or more pretreatment processes, or whole pretreated slurries.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Characterization of vegetation by microwave and optical remote sensing

Two series of carefully controlled experiments were conducted. First, plots of important crops (corn, soybeans, and sorghum), prairie grasses (big bluestem, switchgrass, tal fescue, orchardgrass, bromegrass), and forage legumes (alfalfa, red clover, and crown vetch) were manipulated to produce wide ranges of phytomass, leaf area index, and canopy architecture. Second, coniferous forest canopies were simulated using small balsam fir trees grown in large pots of soil and arranged systematically on a large (5 m) platform. Rotating the platform produced many new canopies for frequency and spatial averaging of the backscatter signal. In both series of experiments, backscatter of 5.0 GHz (C-Band) was measured as a function of view angle and polarization. Biophysical measurements included leaf area index, fresh and dry phytomass, water content of canopy elements, canopy height, and soil roughness and moisture content. For a subset of the above plots, additional measurements were acquired to exercise microwave backscatter models. These measurements included size and shape of leaves, stems, and fruit and the probability density function of leaf and stem angles. The relationships of the backscattering coefficients and the biophysical properties of the canopies were evaluated using statistical correlations, analysis of variance, and regression analysis. Results from the corn density and balsam fir experiments are discussed and analyses of data from the other experiments are summarized.

Daughtry, C. S. T.↗

Components of surface energy balance in a temperate grassland ecosystem

Eddy correlation measurements of moisture, heat, and momentum fluxes were made at a tall grassland site in Kansas during the First International Satellite Land Surface Climatology Project Field Experiment. The fluxes, stomatal conductance, and leaf water potential of three grass species are reported. The species are big bluestem, indiangrass, and switchgrass. The daily and seasonal variation in the components of the surface energy balance and the aerodynamic and canopy surface conductances for prairie vegetation are examined.

Kim, Joon↗

Aboveground and Belowground Responses to Cyanobacterial Biofertilizer Supplement in a Semi-Arid, Perennial Bioenergy Cropping System

The need for sustainable agricultural practices to meet the food, feed, and fuel demands of a growing global population while reducing detrimental environmental impacts has driven research in multi-faceted approaches to agricultural sustainability. Perennial cropping systems and microbial biofertilizer supplements are two emerging strategies to increase agricultural sustainability that are studied in tandem for the first time in this study. During the establishment phase of a perennial switchgrass stand in SW Montana, USA, we supplemented synthetic fertilization with a nitrogen-fixing cyanobacterial biofertilizer (CBF) and were able to maintain aboveground crop productivity in comparison to a synthetic only (urea) fertilizer treatment. Soil chemical analysis conducted at the end of the growing season revealed that late-season nitrogen availability in CBF-supplemented field plots increased relative to urea-only plots. High-throughput sequencing of bacterial/archaeal and fungal communities suggested fine-scale responses of the microbial community and sensitivity to fertilization among arbuscular mycorrhizal fungi, Planctomycetes, Proteobacteria, and Actinobacteria. Given their critical role in plant productivity and soil nutrient cycling, soil microbiome monitoring is vital to understand the impacts of implementation of alternative agricultural practices on soil health.

biofertilizer↗

Breakthrough: Using Microbes to Make Advanced Biofuels

Jay Keasling, Berkeley Lab's Associate Director for Bioscience and the CEO of DOE's Joint BioEnergy Institute (JBEI), explains how special strains of microbes can convert the biomass of non-food crops and agricultural waste into fuels for cars, trucks and jet planes. Keasling's research team at JBEI has developed E.coli that can digest switchgrass and convert the plant sugars into gasoline, diesel or jet fuel, not unlike the process by which beer is brewed.

09 BIOMASS FUELS↗

Anaerobic High-Throughput Cultivation Method for Isolation of Thermophiles Using Biomass-Derived Substrates

Flow cytometry (FCM) techniques have been developed for sorting mesophilic organisms, but the difficulty increases if the target microbes are thermophilic anaerobes. We demonstrate a reliable, high-throughput method of screening thermophilic anaerobic organisms using FCM and 96-well plates for growth on biomass-relevant substrates. The method was tested using the cellulolytic thermophiles Clostridium ther- mocellum (Topt = 55 C), Caldicellulosiruptor obsidiansis (Topt = 78 C) and the fermentative hyperthermo- philes, Pyrococcus furiosus (Topt = 100 C) and Thermotoga maritima (Topt = 80 C). Multi-well plates were incubated at various temperatures for approximately 72 120 h and then tested for growth. Positive growth resulting from single cells sorted into individual wells containing an anaerobic medium was verified by OD600. Depending on the growth substrate, up to 80 % of the wells contained viable cultures, which could be transferred to fresh media. This method was used to isolate thermophilic microbes from Rabbit Creek, Yellowstone National Park (YNP), Wyoming. Substrates for enrichment cultures including crystalline cellulose (Avicel), xylan (from Birchwood), pretreated switchgrass and Populus were used to cultivate organisms that may be of interest to lignocellulosic biofuel production.

Anaerobic↗

Impact of Mixed Feedstocks and Feedstock Densification on Ionic Liquid Pretreatment Efficiency

Background: Lignocellulosic biorefineries must be able to efficiently process the regional feedstocks that are available at cost-competitive prices year round. These feedstocks typically have low energy densities and vary significantly in composition. One potential solution to these issues is blending and/or densifying the feedstocks in order to create a uniform feedstock. Results/discussion: We have mixed four feedstocks - switchgrass, lodgepole pine, corn stover, and eucalyptus - in flour and pellet form and processed them using the ionic liquid 1-ethyl-3-methylimidazolium acetate. Sugar yields from both the mixed flour and pelletized feedstocks reach 90% within 24 hours of saccharification. Conclusions: Mixed feedstocks, in either flour or pellet form, are efficiently processed using this pretreatment process, and demonstrate that this approach has significant potential.

09 BIOMASS FUELS↗

Twenty-Seventh Fungal Genetics Conference, Asilomar, CA, March 12-17, 2013

This meeting brings together ~900 international scientists to discuss the latest research on fungal genetics. Sessions of particular relevance to DOE include lignocellulose degradation, cellulose conversion to fermentable sugars, fermentation of sugars to fuel molecules. Other sessions cover fungal diseases of biomass crops (miscanthus, corn, switchgrass, etc.).

09 BIOMASS FUELS↗

Using the Model Perennial Grass Brachypodium sylvaticum to Engineer Resistance to Multiple Abiotic Stresses

We are using the perennial model grass Brachypodium sylvaticum to identify combinations of transgenes that enhance tolerance to multiple, simultaneous abiotic stresses. The most successful transgene combinations will ultimately be used to create improved switchgrass (Panicum virgatum L.) cultivars. To further develop B. sylvaticum as a perennial model grass, and facilitate our planned transcriptional profiling, we are sequencing and annotating the genome. We have generated ~40x genome coverage using PacBio sequencing of the largest possible size selected libraries (18, 22, 25 kb). Our initial assembly using only long-read sequence contained 320 Mb of sequence with an N50 contig length of 315 kb and an N95 contig length of 40 kb. This assembly consists of 2,430 contigs, the largest of which was 1.6 Mb. The estimated genome size based on c-values is 340 Mb indicating that about 20 Mb of presumably repetitive DNA remains yet unassembled. Significantly, this assembly is far superior to an assembly created from paired-end short-read sequence, ~100x genome coverage. The short-read-only assembly contained only 226 Mb of sequence in 19k contigs. To aid the assembly of the scaffolds into chromosome-scale assemblies we produced an F2 mapping population and have genotyped 480 individuals using a genotype by sequence approach. One of the reasons for using B. sylvaticum as a model system is to determine if the transgenes adversely affect perenniality and winter hardiness. Toward this goal, we examined the freezing tolerance of wild type B. sylvaticum lines to determine the optimal conditions for testing the freezing tolerance of the transgenics. A survey of seven accessions noted significant natural variation in freezing tolerance. Seedling or adult Ain-1 plants, the line used for transformation, survived an 8 hour challenge down to -6 oC and 50% survived a challenge down to -9 oC. Thus, we will be able to easily determine if the transgenes compromise freezing tolerance. In the effort to develop biotechnological tools for perennial grass improvement, we have completed the transformation of B. sylvaticum with constructs containing 20 genes shown to be associated with enhanced abiotic stress tolerance in monocots. In addition, we have transformed plants with constructs containing a combination of genes (i.e. SARK::IPT- Ubi::HSR1::Ubi::NHX1) in order to simultaneously overexpress genes associated with drought + heat tolerance + salt tolerance. We generated single copy insert T1 lines for all constructs and the generation and bulking of homozygous T2 lines is well underway. In addition to our B. sylvaticum transgenics, we transformed B. distachyon with many of the same genes. Some of the transgenic B. distachyon plants subjected to a combined stress of both drought and salinity were able to produced higher yields than wild type plants. Our results indicate a great potential for the development of grasses with improved performance and yield in water-limited areas.

Gordon, Sean↗

Bioenergy Technologies Office FY 2017 Budget At-A-Glance

The Bioenergy Technologies Office (BETO) is accelerating the commercialization of first-of-a-kind technologies that use our nation’s abundant renewable biomass resources for the production of advanced biofuels and biobased products. Non-food sources of biomass, such as algae, agricultural residues and forestry trimmings, and energy crops like switchgrass, are being used in BETO-supported, cutting-edge technologies to produce drop-in biofuels, including renewable gasoline, diesel, and jet fuels. BETO is also investigating how to improve the economics of biofuel production by converting biomass into higher-value chemicals and products that historically have always been derived from petroleum.

Bioenergy, Budget, FY2017, Financial↗

Trade-offs between Biofuels Energy Production, Land Use and Water Use in Florida

Objective of the presentation is to document land use and water use implications of biomass production to demonstrate the overall resources implications associated with bioethanol production for Florida’s transportation sector needs. Rationale for using biofuels (BF) is explained, so are advantages & challenges of BF production and use. Land use changes (LUC) in Florida are presented and consequences outlined. It is documented that Florida’s agricultural land is a very limited resource, with only 0.43 ac/person comparing to the global average of 1.71 ac/person. The direct relation of increased biofuels production causing increased water use is explained. Favorable climate, water resources, advanced research, traditional leading agricultural role, minor oil reserves, no refineries and increasing energy demands are the main reasons why Florida considers pursuing BF production in large scale. Eight various bioethanol crops produced in Florida were considered in this study (Miscanthus, Switchgrass, Sweet Sorghum, Corn, Elephantgrass, Sugarcane, Energycane, Eucalyptus). Biomass yield and bioethanol yield of these crops are documented. Bioethanol needs of Florida are estimated and related land requirements for the needed bioethanol production calculated. Projections for various bioethanol blends (E15 to E85) are then presented. Finally, water demand for biofuels production is quantified. It is concluded that land use requirement for production of all ethanol in E85 fuel blend in Florida is roughly the same as the total available ag land in Florida for the best yielding biofuels crops (energycane, eucalyptus). Water demand for production of all ethanol needed for E100 would increase current overall water consumption in Florida between 65% and 100% for the most common biofuels crops. Vehicular energy is only 33% of Floridians energy consumption, so even all Florida’s agricultural land was given up for biofuels, it would still produce only 33% of Florida’s total energy needs. Still, bioethanol (primarily cellulosic) produced in Florida has a potential to meet a significant portion of the State’s transportation needs. Assuming no change in food production and consumption habits in Florida, the likely result of biofuels sector expansion would be the conversion of natural lands or low-intensity agricultural lands into high-intensity biomass production and the associated increased water consumption and water quality implications.

09 BIOMASS FUELS↗

Techno-Economic Analysis and Life Cycle Assessment for Guiding Bioenergy Pathway Development

The Center for Bioenergy Innovation (CBI) is a bioenergy research center recently launched by the U.S. Department of Energy Office of Science's Biological and Environmental Research program. CBI's objective is to enable innovations across the bioenergy supply chain through development of poplar and switchgrass phenotypes, microorganisms for consolidated bio-processing (CBP), in which biomass fermentation and conversion is accomplished in a single unit operation, and lignin valorization processes. In addition to basic science, CBI's activities involve the application of techno-economic analysis (TEA) and life cycle assessment (LCA) to the bioenergy pathways under study. TEA and LCA is used to quantify the impacts that research and development breakthroughs have on the economic viability and sustainability of a bioenergy pathway, and to identify drivers for reducing costs and improving sustainability through targeted research efforts. Combining TEA and LCA allows for understanding the economic and sustainability benefits and trade-offs of these integrated bioenergy systems. The focus of this presentation is a parameterized, integrated TEA-LCA model, which will be discussed along with an application to bioenergy pathways currently under study. The model combines data and information developed by CBI researchers into a superstructure of potential bioenergy pathways and their life cycles. Model parameters include feedstock species and phenotype, farming, harvesting, storage and transportation practices, and the microbes used for biomass conversion and lignin valorization, among others. The parameterized TEA-LCA model allows for the rapid quantification of pathway economic and sustainability metrics such as minimum fuel selling price, payback period, fossil fuel consumption and net greenhouse gas emissions. To demonstrate the model, economic and sustainability metrics for a bioenergy pathway utilizing CBP will be quantified and compared to the same metrics for a conventional bioenergy pathway. Results of the comparison will be used to identify and prioritize high-impact research areas within the CBP pathway. fermentation and conversion is accomplished in a single unit operation, and lignin valorization processes. In addition to basic science, CBI's activities involve the application of techno-economic analysis (TEA) and life cycle assessment (LCA) to the bioenergy pathways under study. TEA and LCA is used to quantify the impacts that research and development breakthroughs have on the economic viability and sustainability of a bioenergy pathway, and to identify drivers for reducing costs and improving sustainability through targeted research efforts. Combining TEA and LCA allows for understanding the economic and sustainability benefits and trade-offs of these integrated bioenergy systems. The focus of this presentation is a parameterized, integrated TEA-LCA model, which will be discussed along with an application to bioenergy pathways currently under study. The model combines data and information developed by CBI researchers into a superstructure of potential bioenergy pathways and their life cycles. Model parameters include feedstock species and phenotype, farming, harvesting, storage and transportation practices, and the microbes used for biomass conversion and lignin valorization, among others. The parameterized TEA-LCA model allows for the rapid quantification of pathway economic and sustainability metrics such as minimum fuel selling price, payback period, fossil fuel consumption and net greenhouse gas emissions. To demonstrate the model, economic and sustainability metrics for a bioenergy pathway utilizing CBP will be quantified and compared to the same metrics for a conventional bioenergy pathway. Results of the comparison will be used to identify and prioritize high-impact research areas within the CBP pathway.

09 BIOMASS FUELS↗

Leveraging Super High Optical Resolution Microscopy to Probe the Interaction Zone Between Clostridium thermocellum and Biomass

This poster, part of the Pacific Northwest National Laboratory-sponsored Integration 2020: Visualizing the Proteome virtual conference, discusses super high optical resolution microscopy to probe the interaction zone between Clostritium thermocellum and biomass. Clostridium thermocellum is one of the most efficient microorganisms for the deconstruction of biomass. To achieve this high level of cellulolytic activity, C. thermocellum uses large multienzyme complexes known as cellulosomes to sugars in 4-5 break down polysaccharides found in plant cell walls. The attachment of bacterial switchgrass 70% cells to the nearby substrate via the cellulosome has been hypothesized to be the reason for this high efficiency. The region lying between the cell and the substrate has shown great variation and dynamics that are affected by the growth stage of cells and the substrate used for growth.

bacteria↗