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At least 109 records · Page 6

Variance Reduction within Implicit Monte Carlo Thermal Radiation Transport using the Local Importance Function Transform [Slides]

System of equations derived by Fleck and Cummings to model time-dependent thermal radiative transfer (TRT) problems: Solution of radiation specific intensity (I), non-linearly coupled to material internal energy (U); Absorption and re-emission approximated by effective scattering events. Useful for high-energy density physics simulations: i.e., astrophysics, inertial confinement fusion (ICF). Whereas deterministic methods are fully discretized and free of statistical noise, Monte Carlo methods allow for dynamic sampling of the phase space at the price of statistical noise; Monte Carlo methods are also characterized by a slow $\frac{1}{√Ν}$ convergence rate.

73 NUCLEAR PHYSICS AND RADIATION PHYSICS↗

Parallel supercomputing with commodity components

We have implemented a parallel computer architecture based entirely upon commodity personal computer components. Using 16 Intel Pentium Pro microprocessors and switched fast ethernet as a communication fabric, we have obtained sustained performance on scientific applications in excess of one Gigaflop. During one production astrophysics treecode simulation, we performed 1.2 x 10(sup 15) floating point operations (1.2 Petaflops) over a three week period, with one phase of that simulation running continuously for two weeks without interruption. We report on a variety of disk, memory and network benchmarks. We also present results from the NAS parallel benchmark suite, which indicate that this architecture is competitive with current commercial architectures. In addition, we describe some software written to support efficient message passing, as well as a Linux device driver interface to the Pentium hardware performance monitoring registers.

Performance↗

The Formation of Nucleobases from the Irradiation of Purine in Astophysical Ices and Comparisons with Meteorites.

N-heterocycles have been identified in meteorites and their extraterrestrial origins are suggested by isotopic ratio measurements. Although small N- heterocycles have not been detected in the interstellar medium (ISM), recent experiments in our lab have shown that the irradiation of the aromatic molecules like benzene (C6H6) and naphthalene (C10H8) in mixed molecular ices leads to the formation of O- and N-heterocyclic molecules. Among the class of N-heterocycles are the nucleobases, which are of astrobiological interest because they are the information bearing units of DNA and RNA. Nucleobases have been detected in meteorites [3-5], with isotopic signatures that are also consistent with an extraterrestrial origin. Three of the biologically relevant nucleobases (uracil, cytosine, and guanine) have a pyrimidine core structure while the remaining two (adenine and guanine) possess a purine core. Previous experiments in our lab have demonstrated that all of the bio-logical nucleobases (and numerous other molecules) with a pyrimidine core structure can be produced by irradiating pyrimidine in mixed molecular ices of several compositions [6-8]. In this work, we study the formation of purine-based molecules, including the nucleobases adenine, and guanine, from the ultraviolet (UV) irradiation of purine in ices consisting mixtures of H2O and NH3 at low temperature. The experiments are designed to simulate the astrophysical conditions under which these species may be formed in dense molecular clouds, protoplanetary disks, or on the surfaces of icy bodies in planetary systems.

Astrochemistry↗

A deep learning approach to fast analysis of collective Thomson scattering spectra

Fast analysis of collective Thomson scattering ion acoustic wave features using a deep convolutional neural network model is presented. The network was trained from spectra to predict the plasma parameters, including ion velocities, population fractions, and ion and electron temperatures. A fully kinetic particle-in-cell simulation was used to model a laboratory astrophysics experiment and simulate a diagnostic image of the ion acoustic wave feature. Network predictions were compared with Bayesian inference of the plasma model parameters for both the simulated and experimentally measured images. Both approaches were fairly accurate predicting the simulated image and the network predictions matched a good portion of the Bayesian results for the experimentally measured image. The Bayesian approach is more robust to noise and motivates future work to train deep learning models with realistic noise. The advantage of the deep learning model is making thousands of predictions in a few hundred milliseconds, compared to a few seconds to minutes per prediction for the optimization and Bayesian approaches presented here. The results demonstrate promising capabilities of deep learning models to analyze Thomson data orders of magnitude faster than conventional methods when using the neural network for standalone analysis. If more rigorous analysis is needed, neural network predictions can be used to quickly initialize other optimization methods and increase chances of success. This is especially useful when the dataset becomes very large or highly dimensional and manually refining initial conditions for the entire dataset are no longer tractable.

70 PLASMA PHYSICS AND FUSION TECHNOLOGY↗

Simulating of magnetic reconnection in solar flares

Magnetic reconnection is an astrophysical process where neighboring magnetic field lines running anti-parallel are reconfigured. Observations of solar flares are what pushed for serious research regarding magnetic reconnection as it seemed to be the underlying mechanism. The reconfiguration of the field lines results in an explosive release of energy as magnetic field energy is converted into plasma kinetic and thermal energies. Our work begins with Athena++, an astrophysical magnetohydrodynamic (MHD) simulation code, and an existing magnetic reconnection setup.

79 ASTRONOMY AND ASTROPHYSICS↗

Testing the mean field theory of scalar field dark matter

Scalar field dark matter offers an interesting alternative to the traditional WIMP dark matter picture. Astrophysical and cosmological simulations are useful to constraining the mass of the dark matter particle in this model. This is particularly true at low mass where the wavelike nature of the dark matter particle manifests on astrophysical scales. These simulations typical use a classical field approximation. In this work, we look at extending these simulations to include quantum corrections. We look into both the ways in which large corrections impact the predictions of scalar field dark matter, and the timescales on which these corrections grow large. Corrections tend to lessen density fluctuations and increase the effect of “quantum pressure”. During collapse, these corrections grow exponentially, quantum corrections would become important in about \sim 30 ∼ 30 dynamical times. This implies that the predictions of classical field simulations may differ from those with quantum corrections for systems with short dynamical times.

Eberhardt, Andrew↗

HPC-driven computational reproducibility in numerical relativity codes: a use case study with IllinoisGRMHD

Abstract Reproducibility of results is a cornerstone of the scientific method. Scientific computing encounters two challenges when aiming for this goal. Firstly, reproducibility should not depend on details of the runtime environment, such as the compiler version or computing environment, so results are verifiable by third-parties. Secondly, different versions of software code executed in the same runtime environment should produceconsistent numerical results for physical quantities. In this manuscript, we test the feasibility of reproducing scientific results obtained using theIllinoisGRMHDcode that is part of an open-source community software for simulation in relativistic astrophysics, theEinstein Toolkit. We verify that numerical results of simulating a single isolated neutron star withIllinoisGRMHDcan be reproduced, and compare them to results reported by the code authors in 2015. We use two different supercomputers: Expanse at SDSC, and Stampede2 at TACC. By compiling the source code archived along with the paper on both Expanse and Stampede2, we find thatIllinoisGRMHDreproduces results published in its announcement paper up to errors comparable to round-off level changes in initial data parameters. We also verify that a current version ofIllinoisGRMHDreproduces these results once we account for bug fixes which have occurred since the original publication.

Astronomy & Astrophysics↗

KilonovaNet : Surrogate models of kilonova spectra with conditional variational autoencoders

ABSTRACT Detailed radiative transfer simulations of kilonova spectra play an essential role in multimessenger astrophysics. Using the simulation results in parameter inference studies requires building a surrogate model from the simulation outputs to use in algorithms requiring sampling. In this work, we present kilonovanet, an implementation of conditional variational autoencoders (cVAEs) for the construction of surrogate models of kilonova spectra. This method can be trained on spectra directly, removing overhead time of pre-processing spectra, and greatly speeds up parameter inference time. We build surrogate models of three state-of-the-art kilonova simulation data sets and present in-depth surrogate error evaluation methods, which can in general be applied to any surrogate construction method. By creating synthetic photometric observations from the spectral surrogate, we perform parameter inference for the observed light-curve data of GW170817 and compare the results with previous analyses. Given the speed with which kilonovanet performs during parameter inference, it will serve as a useful tool in future gravitational wave observing runs to quickly analyse potential kilonova candidates.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Three-dimensional Dynamics of Strongly Twisted Magnetar Magnetospheres: Kinking Flux Tubes and Global Eruptions

Abstract The origins of the various outbursts of hard X-rays from magnetars (highly magnetized neutron stars) are still unknown. We identify instabilities in relativistic magnetospheres that can explain a range of X-ray flare luminosities. Crustal surface motions can twist the magnetar magnetosphere by shifting the frozen-in footpoints of magnetic field lines in current-carrying flux bundles. Axisymmetric (2D) magnetospheres exhibit strong eruptive dynamics, i.e., catastrophic lateral instabilities triggered by a critical footpoint displacement of ψ crit ≳ π . In contrast, our new three-dimensional (3D) twist models with finite surface extension capture important non-axisymmetric dynamics of twisted force-free flux bundles in dipolar magnetospheres. Besides the well-established global eruption resulting (as in 2D) from lateral instabilities, such 3D structures can develop helical, kink-like dynamics, and dissipate energy locally (confined eruptions). Up to 25% of the induced twist energy is dissipated and available to power X-ray flares in powerful global eruptions, with most of our models showing an energy release in the range of the most common X-ray outbursts, ≲10 43 erg. Such events occur when significant energy builds up while deeply buried in the dipole magnetosphere. Less energetic outbursts likely precede powerful flares, due to intermittent instabilities and confined eruptions of a continuously twisting flux tube. Upon reaching a critical state, global eruptions produce the necessary Poynting-flux-dominated outflows required by models prescribing the fast radio burst production in the magnetar wind—for example, via relativistic magnetic reconnection or shocks.

79 ASTRONOMY AND ASTROPHYSICS↗

Impact of moment-based, energy integrated neutrino transport on microphysics and ejecta in binary neutron star mergers

We present an extensive study of the effects of neutrino transport in three-dimensional general relativistic radiation hydrodynamics (GRHD) simulations of binary neutron star (BNS) mergers using our moment-based, energy-integrated neutrino radiation transport (M1) scheme. Here, we consider a total of eight BNS configurations, while varying equation of state models, mass ratios, and grid resolutions, for a total of 16 simulations. We find that M1 neutrino transport is crucial in modeling the local absorption of neutrinos and the deposition of lepton number throughout the medium. We provide an in-depth look at the effects of neutrinos on the fluid dynamics and luminosity during the late inspiral and postmerger phases, the properties of ejecta and outflow, and the postmerger nucleosynthesis. The simulations presented in this work comprise an extensive study of the combined effect of the equation of state and M1 neutrino transport in GRHD simulations of BNS mergers, and establish that the solution provided by our M1 scheme is robust across system properties.

150 ≤ A ≤ 18959 ≤ A ≤ 8990 ≤ A ≤ 149↗

New particle pusher with hadronic interactions for modeling multimessenger emission from compact objects

We propose novel numerical schemes based on the Boris method in curved spacetime, incorporating both hadronic and radiative interactions for the first time. Once the proton has lost significant energy due to radiative and hadronic losses, and its gyroradius has decreased below typical scales on which the electromagnetic field varies, we apply a guiding center approximation (GCA). We fundamentally simulate collision processes either with a Monte-Carlo method or, where applicable, as a continuous energy loss, contingent on the local optical depth. To test our algorithm for the first time combining the effects of electromagnetic, gravitational, and radiation fields including hadronic interactions, we simulate highly relativistic protons traveling through various electromagnetic fields and proton backgrounds. We provide unit tests in various spatially dependent electromagnetic and gravitational fields and background photon and proton distributions, comparing the trajectory against analytic results. We propose that our method can be used to analyze hadronic interactions in black hole accretion disks, jets, and coronae to study the neutrino abundance from active galactic nuclei.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Simulating ‘Two Ribbon’ Type Solar Flares [Slides]

The underlying mechanism in solar flares in a process known as magnetic reconnection. This astrophysical process is when magnetic field lines, running anti-parallel, break and reconnect. The change in configuration of field lines results in an explosive release of energy as the leftover magnetic energy is converted to kinetic and thermal energies. In this project, we are using an astrophysical magnetohydrodynamic (MHD) simulation code known as Athena++ with a reconnection problem generator file created by Li et al. 2018. Our current research is to successfully implement a radiative cooling term into the MHD equations as it could have important physical effects on the plasma. We use Klimchuk et al. 2008 and SPEX_DM as our chosen cooling functions. The results from the SPEX_DM function show there is a condensation forming that we had predicted but had not seen before with our simulation code. We will continue to analyze the SPEX_DM function and potentially implement thermal conduction.

79 ASTRONOMY AND ASTROPHYSICS↗

Neutrino Flavor Transformation in Neutron Star Mergers

Here, we present the first numerical relativity simulations including neutrino flavor transformations that could result from flavor instabilities, quantum many-body effects, or potential beyond standard model physics in neutron star mergers. We find that neutrino flavor transformations impact the composition and structure of the remnant, potentially leaving an imprint on the postmerger gravitational-wave signal. They also have a significant impact on the composition and nucleosynthesis yields of the ejecta.

79 ASTRONOMY AND ASTROPHYSICS↗

Magnetic flux emergence in binary neutron star remnants

Using high-resolution AthenaK simulations of a twisted toroidal flux tube, we study the flux emergence of magnetic structures in the shear layer of a hot massive neutron star typical of a binary neutron star remnant. High-resolution simulations demonstrate that magnetic buoyant instabilities allow for emergence only for extremely large magnetic fields significantly exceeding 10 17 G, and more typical fields around 10 16 G are instead dominated by hydrodynamic effects. Because merger remnants tend to be stable against hydrodynamic convection, our work places strong limitations on the mechanisms by which massive binary neutron star remnants can produce the magnetically-driven outflows needed to power jets.

79 ASTRONOMY AND ASTROPHYSICS↗

Mahakala: A Python-based Modular Ray-tracing and Radiative Transfer Algorithm for Curved Spacetimes

We introduce Mahakala, a Python-based, modular, radiative ray-tracing code for curved spacetimes. We employ Google's JAX framework for accelerated automatic differentiation, which can efficiently compute Christoffel symbols directly from the metric, allowing the user to easily and quickly simulate photon trajectories through non-Kerr spacetimes. JAX also enables Mahakala to run in parallel on both CPUs and GPUs. Mahakala natively uses the Cartesian Kerr–Schild coordinate system, which avoids numerical issues caused by the pole in spherical coordinate systems. We demonstrate Mahakala's capabilities by simulating 1.3 mm wavelength images (the wavelength of Event Horizon Telescope observations) of general relativistic magnetohydrodynamic simulations of low-accretion rate supermassive black holes. The modular nature of Mahakala allows us to quantitatively explore how different regions of the flow influence different image features. We show that most of the emission seen in 1.3 mm images originates close to the black hole and peaks near the photon orbit. We also quantify the relative contribution of the disk, forward jet, and counterjet to 1.3 mm images.

79 ASTRONOMY AND ASTROPHYSICS↗

Onset of Plasmoid Reconnection during Magnetorotational Instability

The evolution of current sheets in accretion flows undergoing magnetorotational instability (MRI) is examined through two- and three-dimensional numerical modeling of the resistive MHD equations in global cylindrical geometry. With an initial uniform magnetic field aligned in the vertical (z) direction, MRI produces radially extended toroidal (azimuthal) current sheets. In both 2D and 3D when axisymmetric modes dominate, these current sheets attract each other and merge in the poloidal (rz) plane, driving magnetic reconnection when the Lundquist number S > 3 × 10 2 , making it a possible source of plasmoids (closed magnetic loops) in accretion disks. At high Lundquist numbers in the 2D regime, starting at S = 5 × 10 3 , self-consistent MRI-generated current sheets become thin and subject to plasmoid instability, and therefore spontaneous magnetic reconnection. When nonaxisymmetric 3D modes dominate, turbulence makes the azimuthal current sheets more unstable and stretch vertically. Toroidally extended vertical current sheets in the inner region, as well as larger 3D magnetic islands in the outer regions of the disks are also formed. These findings have strong ramifications for astrophysical disks as potential sources of plasmoids that could cause local heating, particle acceleration, and high energy EM radiation.

79 ASTRONOMY AND ASTROPHYSICS↗

Attribute-Aware RBFs: Interactive Visualization of Time Series Particle Volumes Using RT Core Range Queries

Smoothed-particle hydrodynamics (SPH) is a mesh-free method used to simulate volumetric media in fluids, astrophysics, and solid mechanics. Visualizing these simulations is problematic because these datasets often contain millions, if not billions of particles carrying physical attributes and moving over time. Radial basis functions (RBFs) are used to model particles, and overlapping particles are interpolated to reconstruct a high-quality volumetric field; however, this interpolation process is expensive and makes interactive visualization difficult. Existing RBF interpolation schemes do not account for color-mapped attributes and are instead constrained to visualizing just the density field. To address these challenges, we exploit ray tracing cores in modern GPU architectures to accelerate scalar field reconstruction. We use a novel RBF interpolation scheme to integrate per-particle colors and densities, and leverage GPU-parallel tree construction and refitting to quickly update the tree as the simulation animates over time or when the user manipulates particle radii. We also propose a Hilbert reordering scheme to cluster particles together at the leaves of the tree to reduce tree memory consumption. Finally, we reduce the noise of volumetric shadows by adopting a spatially temporal blue noise sampling scheme. Our method can provide a more detailed and interactive view of these large, volumetric, time-series particle datasets than traditional methods, leading to new insights into these physics simulations.

Particle Volumes↗

A mixed method Poisson solver for three-dimensional self-gravitating astrophysical fluid dynamical systems

A key ingredient in the simulation of self-gravitating astrophysical fluid dynamical systems is the gravitational potential and its gradient. This paper focuses on the development of a mixed method multigrid solver of the Poisson equation formulated so that both the potential and the Cartesian components of its gradient are self-consistently and accurately generated. The method achieves this goal by formulating the problem as a system of four equations for the gravitational potential and the three Cartesian components of the gradient and solves them using a distributed relaxation technique combined with conventional full multigrid V-cycles. The method is described, some tests are presented, and the accuracy of the method is assessed. We also describe how the method has been incorporated into our three-dimensional hydrodynamics code and give an example of an application to the collision of two stars. We end with some remarks about the future developments of the method and some of the applications in which it will be used in astrophysics.

Duncan, Comer↗