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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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All sourcesNASA NTRSDOE OSTI
DOE OSTI2024

Cold-Season Precipitation Sensitivity to Microphysical Parameterizations: Hydrologic Evaluations Leveraging Snow Lidar Datasets

Abstract Cloud microphysical processes are an important facet of atmospheric modeling, as they can control the initiation and rates of snowfall. Thus, parameterizations of these processes have important implications for modeling seasonal snow accumulation. We conduct experiments with the Weather Research and Forecasting (WRF V4.3.3) Model using three different microphysics parameterizations, including a sophisticated new scheme (ISHMAEL). Simulations are conducted for two cold seasons (2018 and 2019) centered on the Colorado Rockies’ ∼750-km 2 East River watershed. Precipitation efficiencies are quantified using a drying-ratio mass budget approach and point evaluations are performed against three NRCS SNOTEL stations. Precipitation and meteorological outputs from each are used to force a land surface model (Noah-MP) so that peak snow accumulation can be compared against airborne snow lidar products. We find that microphysical parameterization choice alone has a modest impact on total precipitation on the order of ±3% watershed-wide, and as high as 15% for certain regions, similar to other studies comparing the same parameterizations. Precipitation biases evaluated against SNOTEL are 15% ± 13%. WRF Noah-MP configurations produced snow water equivalents with good correlations with airborne lidar products at a 1-km spatial resolution: Pearson’s r values of 0.9, RMSEs between 8 and 17 cm, and percent biases of 3%–15%. Noah-MP with precipitation from the PRISM geostatistical precipitation product leads to a peak SWE underestimation of 32% in both years examined, and a weaker spatial correlation than the WRF configurations. We fall short of identifying a clearly superior microphysical parameterization but conclude that snow lidar is a valuable nontraditional indicator of model performance.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2019

Merged Cloud and Precipitation Dataset from the HIAPER GV for the Cloud System Evolution in the Trades (CSET) Campaign

The Cloud System Evolution in the Trades (CSET) aircraft campaign was conducted in the summer of 2015 in the northeast Pacific to observe the transition from stratocumulus to cumulus cloud regime. Fourteen transects were made between Sacramento, California, and Kona, Hawaii, using the NCAR's High-Performance Instrumented Airborne Platform for Environmental Research (HIAPER) Gulfstream V (GV) aircraft. The HIAPER W-band Doppler cloud radar (HCR) and the high-spectral-resolution lidar (HSRL), in their first deployment together on board the GV, provided crucial cloud and precipitation observations. The HCR recorded the raw in-phase (I) and quadrature (Q) components of the digitized signal, from which the Doppler spectra and its first three moments were calculated. HCR/HSRL data were merged to develop a hydrometeor mask on a uniform georeferenced grid of 2-Hz temporal and 20-m vertical resolutions. The hydrometeors are classified as cloud or precipitation using a simple fuzzy logic technique based on the HCR mean Doppler velocity, HSRL backscatter, and the ratio of HCR reflectivity to HSRL backscatter. This is primarily applied during zenith-pointing conditions under which the lidar can detect the cloud base and the radar is more sensitive to clouds. The microphysical properties of below-cloud drizzle and optically thin clouds were retrieved using the HCR reflectivity, HSRL backscatter, and the HCR Doppler spectrum width after it is corrected for the aircraft speed. These indicate that as the boundary layers deepen and cloud-top heights increase toward the equator, both the cloud and rain fractions decrease.

54 ENVIRONMENTAL SCIENCES↗
DOE OSTI2021

High-throughput virtual laboratory for drug discovery using massive datasets

Time-to-solution for structure-based screening of massive chemical databases for COVID-19 drug discovery has been decreased by an order of magnitude, and a virtual laboratory has been deployed at scale on up to 27,612 GPUs on the Summit supercomputer, allowing an average molecular docking of 19,028 compounds per second. Over one billion compounds were docked to two SARS-CoV-2 protein structures with full optimization of ligand position and 20 poses per docking, each in under 24 hours. GPU acceleration and high-throughput optimizations of the docking program produced 350× mean speedup over the CPU version (50× speedup per node). GPU acceleration of both feature calculation for machine-learning based scoring and distributed database queries reduced processing of the 2.4 TB output by orders of magnitude. The resulting 50× speedup for the full pipeline reduces an initial 43 day runtime to 21 hours per protein for providing high-scoring compounds to experimental collaborators for validation assays.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2024

Dataset for "Resistance of Boron Nitride Nanotubes to Radiation-Induced Oxidation" as published in The Journal of Physical Chemistry C

We present unprecedented results on the damage thresholds and pathways for boron nitride nanotubes (BNNT) under the influence of energetic electrons in an oxidative gas environment, using an environmental aberration-corrected electron microscope over a range of oxygen pressures. We observe a damage cascade process that resists damage until a higher electron dose, compared with carbon nanotubes, initiating at defect-free BNNT sidewalls and proceeding through the conversion from crystalline nanotubes to amorphous boron nitride (BN), resisting oxidation throughout. We compare with prior results on the oxidation of carbon nanotubes and present a model that attributes the onset of damage in both cases to a physisorbed oxygen layer that reduces the threshold for damage onset. Surprisingly, increased temperatures offer protection against damage, as do electron dose rates that significantly exceed the oxygen dose rates, and our model attributes both effects to a physisorbed oxygen population.

Adsorption↗
DOE OSTI2021

SARS-CoV2 Protein-Ligand Simulation Dataset: Layer 1 (Simulation Initial Conditions and Parameters)

A set of 24 protein structures/complexes from the SARS CoV-2 proteome and inputs prepared for simulation using the CHARMM36m forcefield in PDB and gromacs formats. Each system contains a pdb and gromacs top and related input files necessary for running a temperature replica-exchange simulation. In addition, we also include: charmm PSF files (generated from the gromacs topology), a list of temperatures at which replica-exchange simulations were done (tempRamp), example gromacs run input mdp files, and initial minimized structures where available (minimized.pdb).

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

COVID-19 Knowledge Graph -- Dataset for SMCDC 2021 Challenge 2

This repository contains the data for the 2021 Smoky Mountains Computational Sciences Data Challenge (SMCDC21) Challenge 2 -- Finding Novel Links in COVID-19 Knowledge Graph. The total size of all files in this repository is 285MB. Challenge website: https://smc-datachallenge.ornl.gov/2021-challenge-2/ More information about the challenge and the data: https://github.com/ORNL/smcdc-2021-covid-kg

60 APPLIED LIFE SCIENCES↗
DOE OSTI2021

SARS-CoV2 Docking Dataset

Description: Small-molecule conformations and docking scores for 1.4 billion molecules docked against 6 protein targets from SARS-CoV2: MPro 5R84, MPro 6WQF, NSP15 6WLC, PLPro 7JIR, Spike 6M0J, and a hand-optimized model of the RNA-dependent RNA polymerase. Docking was carried out using the Autodock-GPU program performing 20 independent structure minimizations per dock - saving 3 results per molecule. Scores reported include the Autodock free energy estimate as well as RF3 and VS-DUD-E v2 machine-learned rescoring models. Protein structure files and maps in the format input to Autodock-GPU are included. Literature Ref: Supercomputer-Based Ensemble Docking Drug Discovery Pipeline with Application to Covid-19, J. Chem. Inf. Model. 2020, 60(12): 5832–5852.

36 MATERIALS SCIENCE↗
DOE OSTI2024

Dataset for manuscript "Consequences of the failure of equipartition for the p-V behavior of liquid water and the hydration free energy components of a small protein"

Previously, we showed that in the molecular dynamics simulation of a rigid model of water it is necessary to use an integration time-step dt that is less than or equal to 0.5 fs to ensure equipartition between translational and rotational modes. We extended that study in the NVT ensemble to NpT conditions and to an aqueous protein. We study neat liquid water with the rigid, SPC/E model and the protein BBA (PDB ID: 1FME) solvated in the rigid, TIP3P model. We examined integration time-steps ranging from 0.5 fs to 4.0 fs for various thermostat plus barostat combinations. We find that a small time-step, dt, is necessary to ensure consistent prediction of the simulation volume. Hydrogen mass repartitioning alleviates the problem somewhat, but is ineffective for the typical time-step used with this approach. The compressibility, a measure of volume fluctuations, is seen to be sensitive to dt. Using the mean volume estimated from the NpT simulation, we examined the electrostatic and van der Waals contribution to the hydration free energy of the protein in the NVT ensemble. These contributions are also sensitive to dt. In going from a time-step of 2 fs to a time-step of 0.5 fs, the change in the net electrostatic plus van der Waals contribution to the hydration of BBA is already in excess of the folding free energy reported for this protein. The data-set contains the simulation metadata and log files that support the claims noted above.

59 BASIC BIOLOGICAL SCIENCES↗
DOE OSTI2021

MoWSSe HAADF Image Dataset

High angle annular dark field scanning transmission electron microscopy images of MoWSSe (2D quaternary alloy system), by Jordan Hachtel (Center for Nanophase Materials Sciences, Oak Ridge National Laboratory). Comes with an ipython notebook for analysis purposes.

2D materials↗
DOE OSTI2022

Machine Learning assisted optimization and parameter space exploration dataset of spin ice Hamiltonian

This repository contains both simulated and experimental structure factor data for the data challenge involving the inverse scattering problem. The simulated data were generated during a machine-learning-assisted optimization routine described in ref[1]. The experimental structure factor was measured on a rare-earth oxide, Dy2Ti2O7 using diffuse neutron scattering from time-of-flight techniques on the CORELLI instrument at the Spallation Neutron Source, Oak Ridge National Laboratory. A Metropolis Monte Carlo code implemented to run in a High-performance computing setting was used to calculated simulated structure factors for the spin-ice Hamiltonian at 680 mK, which is the same temperature as for the experimental data. The total size of all the files in this repository is 5.12 GB. A detailed description of the files is given below. ExperimentalData_630mK.dat – A linearized version of 3-dimensional experimental data of size 61×81×21. This data was processed to remove an estimation of non-magnetic background, including nuclear scattering signal and instrumentation background. Parameters.dat – 6700 samples were evaluated over the 4-dimensional parameter space (J_1, J_2, J_3 and J_(3^' )). There is an additional parameter, D in the spin Hamiltonian to mimic the dipolar interaction between magnetic ions. However, this parameter, D was fixed to a value determined by prior work. This file contains five columns for the parameters J_1, J_2, J_3, J_(3^' ) and D respectively. 3D_Simulation_Data.dat – The simulated structure factor, S(Q) data are included in this file. Each raw contains a linearized array of 3D volumes of S(Q) calculated for the parameter set given in the corresponding row of the file Parameters.dat. The size of the volume data was matched to the experimental data. Qx(h,-h,0).dat, Qy(k,k,-2k).dat, Qz(l,l,l).dat – These files contain the h, k, and l values along with the reciprocal vectors [h,-h,0], [k,k,-2k] and [l,l,l] respectively.

36 MATERIALS SCIENCE↗
DOE OSTI2021

Combined EDS and EBSD dataset from TiB2 ceramic material

This is supplemental information to a paper to be submitted, tentatively titled Cluster analysis of combined EDS and EBSD data to solve ambiguous phase identifications. Data was acquired from a TiB2 ceramic provided by Missouri University of Science and Technology. Simultaneous EDS and EBSD were acquired on a Tescan MIRA3 GMH field-emission SEM equipped with Oxford Instruments Symmetry CMOS-based EBSD detector and Oxford Instruments UltimMax 170 mm2 silicon-drift detector EDS. Data was acquired using Oxford Instruments AZtec 4.0 software. Data was acquired at 20 keV, 70° tilt, and ≈1 nA probe current. An 80×60 pixel, 40×30 μm map (500 nm pixel pitch) was acquired. EBSD indexing was performed using TiB2, space group 191 P6/mmm, and TiC, space group 225 Fm \bar{3}m, crystal cards.

36 MATERIALS SCIENCE↗
DOE OSTI2022

NOMAD total scattering dataset for SMC data challenge

The data provided for this challenge was measured using the Nanoscale-Ordered Materials Diffractometer (NOMAD) at the Spallation Neutron Source (SNS) at Oak Ridge National Laboratory. The data is stored in a hdf5 file following the NeXus standard and can be read with tools built for either. While the NeXus format is self-describing, there is benefit to explaining some details. The data is stored in 4 NXentries in the file. The NXentries that begin with 'amorphous_SiO2' are for the amorphous data, and the NXentries that begin with 'crystalbolite_SiO2' are for the crystalline material. Solutions that were produced by the scientist are in the entries that end with '_byhand'. Each of the NXdata groups are the plottable data with the 'signal', axes, and (in the case of by-hand components) 'auxiliary_signals' describing which fields should be used. The by-hand component ranges are listed in a 'component' attribute of the various signals. The filtered Sr data is the Fourier transform of the combined components. The data can be quickly viewed using tools such as Nexpy or HDFview. Most languages have libraries that can work with HDF5 (eg. H5py for python) a partial list is provided at https://manual.nexusformat.org/utilities.html The data can be quickly viewed using tools such as Nexpy or HDFview. https://neutrons.ornl.gov/nomad https://www.hdfgroup.org/solutions/hdf5 https://www.nexusformat.org/

36 MATERIALS SCIENCE↗
DOE OSTI2022

Dataset from ORNL Flexible Research Platform (FRP)

The data comes from a two-story light commercial building which can be used to physically simulate light commercial buildings common in the nation's existing building stock. Based on a data collection plan, these measurements were performed for five different building operations. In the data set for each period, 98 data variables were selected and collected, in which 7 variables are weather data and the rest are all building and system operation data.

Cui, Borui↗
DOE OSTI2023

SNAP diffraction dataset for 2023 SMC data challenge

The data provided this challenge is ice under high pressure measured using the Spallation Neutrons and Pressure Diffractometer (SNAP) at the Spallation Neutron Source (SNS) at Oak Ridge National Laboratory. The data is stored in a hdf5 file following the NeXus standard and can be read with tools built for either. While the NeXus format is self-describing, there is benefit to explaining some details. The data is stored in a single NXdata entry within a single NXentry. The NXdata has several fields denoting the 3-dimensional data (signal), the axes (D0 is the Qx axis, D1 is the Qy axis, and D2 is the Qz axis), and fields for the uncertainties and masking information. The data can be quickly viewed using the LoadMD algorithm and slice viewer in the Mantid workbench https://www.mantidproject.org.

36 MATERIALS SCIENCE↗
DOE OSTI2025

Dataset for "A Microfluidic Spore Chamber for Long-Term Imaging of Single-Spore Hyphal Development"

Understanding the life cycle of fungal spores is essential for elucidating their roles in pathogenesis, dispersal, and survival. However, studying spore development under controlled, spatially defined conditions remains challenging. Here, we present the Spore Chamber, a custom-built microfluidic platform engineered for parallel trapping and long-term imaging of individual spores under defined media conditions, enabling real-time visualization of hyphal development. Using Aspergillus fumigatus as a model organism, we demonstrate that sparse trapping of individual spores within size-matched trap geometries enables long-term time-lapse imaging of key developmental stages, including germination, polarized hyphal elongation, branching, and conidiophore formation. To assess the device’s capacity to resolve morphogenetic responses to exogenous signals, we introduced lipochitooligosaccharides (LCOs) and short-chain chitooligosaccharides (COs). Rhizobium-derived, non-sulfated LCO (nsLCO) mixtures induced enhanced secondary branching (hyperbranching), a response not previously reported in A. fumigatus under these signal conditions, to our knowledge, whereas sulfated LCOs and CO4 did not significantly alter branching patterns. In addition, long-term confinement and imaging revealed rare developmental morphologies previously described primarily in mutant strains, including split conidiophore formation, elongated phialides, microcyclic conidiation, and chlamydospore development. Together, these results establish the Spore Chamber as a targeted microfluidic platform for single-spore phenotyping and long-term developmental analysis, with applications in fungal biology, chemical signaling studies, and host–microbe interaction research. Videos of the observed phenomena are included in this data set.

59 BASIC BIOLOGICAL SCIENCES↗