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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 1,225 records · Page 68

High‐throughput profiling and analysis of plant responses over time to abiotic stress

Abstract Sorghum ( Sorghum bicolor (L.) Moench) is a rapidly growing, high‐biomass crop prized for abiotic stress tolerance. However, measuring genotype‐by‐environment (G x E) interactions remains a progress bottleneck. We subjected a panel of 30 genetically diverse sorghum genotypes to a spectrum of nitrogen deprivation and measured responses using high‐throughput phenotyping technology followed by ionomic profiling. Responses were quantified using shape (16 measurable outputs), color (hue and intensity), and ionome (18 elements). We measured the speed at which specific genotypes respond to environmental conditions, in terms of both biomass and color changes, and identified individual genotypes that perform most favorably. With this analysis, we present a novel approach to quantifying color‐based stress indicators over time. Additionally, ionomic profiling was conducted as an independent, low‐cost, and high‐throughput option for characterizing G x E, identifying the elements most affected by either genotype or treatment and suggesting signaling that occurs in response to the environment. This entire dataset and associated scripts are made available through an open‐access, user‐friendly, web‐based interface. In summary, this work provides analysis tools for visualizing and quantifying plant abiotic stress responses over time. These methods can be deployed as a time‐efficient method of dissecting the genetic mechanisms used by sorghum to respond to the environment to accelerate crop improvement.

59 BASIC BIOLOGICAL SCIENCES↗

COMET: A Domain-Specific Compilation of High-Performance Computational Chemistry

The computational power increases over the past decades have greatly enhanced the ability to simulate chemical reactions and understand ever more complex transformations. Tensor contractions are the fundamental computational building block of these simulations. These simulations have often been tied to one platform and restricted in generality by the interface provided to the user. The expanding prevalence of accelerators and researcher demands necessitate a more general approach which is not tied to specific hardware or requires contortion of algorithms to specific hardware platforms. In this paper we present COMET, a domain-specific programming language and compiler infrastructure for tensor contractions targeting heterogeneous accelerators. We present a system of progressive lowering through multiple layers of abstraction and optimization that achieves up to 1.98×speedup for 30 tensor contractions commonly used in computational chemistry and beyond.

Mutlu, Erdal↗

The Corrected Distortion model for Lagrangian spray simulation of transcritical fuel injection

In this work, we present a detailed implementation and validation of the droplet modeling framework proposed by Dahms and Oefelein (2016) into the engine commercial CFD software CONVERGE using the User Defined Function (UDF) interface. The model accounts for the nonlinear deformation and oscillation experienced by liquid spray droplet injected into high pressure and temperature. Lagrangian spray simulations of Engine Combustion Network (ECN) Spray A are performed. Model validation against standard experimental measurements of liquid velocity, vapor mixture fraction is conducted. To perform more rigorous model validation, new experimental measurements based on Diffused Back Illumination (DBI) are introduced. The new measurements are processed for Projected Liquid Volume (PLV), which offers as close as possible one-to-one model validation for liquid penetration while offering new insights into the spray physics. Comparison with a One-D model based on adiabatic mixing theory by Siebers (1999) and Desantes et al. (2007) are also conducted. Through these model validation exercises, it is shown that the new framework improves liquid-phase penetration predictions, following a tendency for enhanced evaporation, compared to the standard approach for both Reynolds Average Navier Stokes (RANS) and Large Eddy Simulation (LES). Additionally, at the liquid length, maximum mixture fraction values predicted by the new approach are in good agreement those of an adiabatic mixing model. Qualitative analysis of the spray behaviors during the early stage of the injection process reveals that the proposed framework predicts significant increase in droplet evaporation rate with lower drop drag compared to the current standard approach.

42 ENGINEERING↗

HIResist: a database of HIV-1 resistance to broadly neutralizing antibodies

Changing the course of the human immunodeficiency virus type I (HIV-1) pandemic is a high public health priority with approximately 39 million people currently living with HIV-1 (PLWH) and about 1.5 million new infections annually worldwide. Broadly neutralizing antibodies (bnAbs) typically target highly conserved sites on the HIV-1 envelope glycoproteins (Envs), which mediate viral entry, and block the infection of diverse HIV-1 strains. But different mechanisms of HIV-1 resistance to bnAbs prevent robust application of bnAbs for therapeutic and preventive interventions. Here we report the development of a new database that provides data and computational tools to aid the discovery of resistant features and may assist in analysis of HIV-1 resistance to bnAbs. Bioinformatic tools allow identification of specific patterns in Env sequences of resistant strains and development of strategies to elucidate the mechanisms of HIV-1 escape; comparison of resistant and sensitive HIV-1 strains for each bnAb; identification of resistance and sensitivity signatures associated with specific bnAbs or groups of bnAbs; and visualization of antibody pairs on cross-sensitivity plots. The database has been designed with a particular focus on user-friendly and interactive interface. Our database is a valuable resource for the scientific community and provides opportunities to investigate patterns of HIV-1 resistance and to develop new approaches aimed to overcome HIV-1 resistance to bnAbs.

60 APPLIED LIFE SCIENCES↗

Cyber-Physical Security and Resiliency Analysis Testbed for Critical Microgrids with IEEE 2030.5: Preprint

IEEE 2030.5, also known as the Common Smart Inverter Standard (CSIP) is a protocol that specifies the interface between the end user and the smart grid. This standard was proposed recently, and provides many functions which if implemented incorrectly might lead to vulnerabilities. This paper proposes a cyber-physical microgrid testbed using OpenDSS and IEEE 2030.5 that can be used to study the performance of the CSIP protocol various scenarios. For critical microgrid installations, it is essential that the critical loads are served in spite of multiple contingencies. A resiliency analysis is performed for a military microgrid to study its performance and the results are analyzed.

CVSS↗

Shrink or Substitute: Handling Process Failures in HPC Systems Using In-Situ Recovery

Efficient utilization of today's high-performance computing (HPC) systems with complex software and hardware components requires that the HPC applications are designed to tolerate process failures at runtime. With low mean-time-to-failure (MTTF) of current and future HPC systems, long running simulations on these systems requires capabilities for gracefully handling process failures by the applications themselves. In this paper, we explore the use of fault tolerance extensions to Message Passing Interface (MPI) called user-level failure mitigation (ULFM) for handling process failures without the need to discard the progress made by the application. We explore two alternative recovery strategies, which use ULFM along with application-driven in-memory checkpointing. In the first case, the application is recovered with only the surviving processes, and in the second case, spares are used to replace the failed processes, such that the original configuration of the application is restored. Our experimental results demonstrate that graceful degradation is a viable alternative for recovery in environments where spares may not be available.

Ashraf, Rizwan↗

Prototype Data Acquisition and Slow Control Systems for the Mu2e Experiment

The Mu2e experiment at the Fermilab Muon Campus will search for the coherent neutrinoless conversion of a muon into an electron in the field of an aluminum nucleus with a sensitivity improvement by a factor of 10 000 over existing limits. Such a charged lepton flavor-violating reaction probes new physics at a scale unavailable with direct searches at either present or planned high-energy colliders. The Mu2e Trigger and Data Acquisition (TDAQ) system exploits otsdaq as its online Data Acquisition System (DAQ) solution. Furthermore, developed at Fermilab, otsdaq integrates both the artdaq DAQ and the art analysis frameworks for event transfer, filtering, and processing. otsdaq is an online DAQ software suite with a focus on flexibility and scalability and provides a multi-user, web-based, interface accessible through a web browser. The read out controllers (ROCs) stream out zero-suppressed data continuously from the detector subsystems to the data transfer controllers (DTCs). The data stream is then read over the peripheral component interconnect express (PCIe) bus to a software filter algorithm that selects events which are combined with the data flux coming from a cosmic-ray veto (CRV) system. The detector control system (DCS) has been developed using the experimental physics and industrial control system (EPICS) open source platform for monitoring, controlling, alarming, and archiving. The DCS has been integrated into otsdaq. A prototype of the TDAQ system and the DCS has been built at Fermilab's Feynman Computing Center. In this article, we report on the progress of the integration of this prototype in the online otsdaq software.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

TU-FG-201-09: Predicting Accelerator Dysfunction

Purpose: To develop an integrated statistical process control (SPC) framework using digital performance and component data accumulated within the accelerator system that can detect dysfunction prior to unscheduled downtime. Methods: Seven digital accelerators were monitored for twelve to 18 months. The accelerators were operated in a ‘run to failure mode’ with the individual institutions determining when service would be initiated. Institutions were required to submit detailed service reports. Trajectory and text log files resulting from a robust daily VMAT QA delivery were decoded and evaluated using Individual and Moving Range (I/MR) control charts. The SPC evaluation was presented in a customized dashboard interface that allows the user to review 525 monitored parameters (480 MLC parameters). Chart limits were calculated using a hybrid technique that includes the standard SPC 3σ limits and an empirical factor based on the parameter/system specification. The individual (I) grand mean values and control limit ranges of the I/MR charts of all accelerators were compared using statistical (ranked analysis of variance (ANOVA)) and graphical analyses to determine consistency of operating parameters. Results: When an alarm or warning was directly connected to field service, process control charts predicted dysfunction consistently on beam generation related parameters (BGP)– RF Driver Voltage, Gun Grid Voltage, and Forward Power (W); beam uniformity parameters – angle and position steering coil currents; and Gantry position accuracy parameter: cross correlation max-value. Control charts for individual MLC – cross correlation max-value/position detected 50% to 60% of MLCs serviced prior to dysfunction or failure. In general, non-random changes were detected 5 to 80 days prior to a service intervention. The ANOVA comparison of BGP determined that each accelerator parameter operated at a distinct value. Conclusion: The SPC framework shows promise. Long term monitoring coordinated with service will be required to definitively determine the effectiveness of the model. Varian Medical System, Inc. provided funding in support of the research presented.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Background Explorer

Tools to construct a model for sources of radioactive backgrounds in a low radioactivity dertector system Background explorer simplifies or automates many of the tedious and error-prone tasks involved in creating a detailed radioactivity budget for a low background detector system. The tool also provides a rich web interface allowing even nontechnical users to easily modify the model assumptions and drill-down into the model and result details. Backend: https://github.com/bloer/bgmodelbuilder Web application: https://github.com/bloer/bgexplorer Demo/user template: https://github.com/bloer/bgexplorer-demo

Loer, Ben↗

OpenMC

OpenMC is an open source, community-developed framework for performing Monte Carlo particle transport calculations.It is capable of simulating neutron and photon transport below ~50 MeV and also includes a model for bremsstrahlung production of photons by electrons/positrons. Fixed source, k-eigenvalue, and subcritical multiplication problems can be solved. Problem geometries can be modeled either using constructive solid geometry or a CAD representation. A flexible and efficient tally system enables a wide variety of physical quantities to be tallied and analyzed. OpenMC can run in parallel using a hybrid MPI and OpenMP programming model and has been extensively tested on leadership class supercomputers. A built-in Bateman equation solver enables the modeling of material composition changes due to irradiation. One of the unique features of OpenMC is its rich, extensible Python and C/C++ programming interfaces that enable programming pre- and post-processing, multigroup cross section generation, workflow automation, multiphysics coupling, and the visualization of geometry and tally results. In addition to the core Monte Carlo transport solver and associated APIs, OpenMC includes a Python-based nuclear data interface that enables power users to inspect, modify,and perform various types of nuclear data processing on ENDF, ACE, and OpenMC¿s native HDF5 files

ROMANO, PaulK.↗

Cyber-informed Engineering Dashboard Tool

The CIE Engineered Controls Database is a large collection of entries and stored in a json structure which makes manual analysis of entries challenging. The dashboard provides a user with a simple interface to look through the database contents.

Lampe, BenjaminR↗

Generalizable, fast, and accurate DeepQSPR with fastprop

Abstract Quantitative Structure–Property Relationship studies (QSPR), often referred to interchangeably as QSAR, seek to establish a mapping between molecular structure and an arbitrary target property. Historically this was done on a target-by-target basis with new descriptors being devised to specifically map to a given target. Today software packages exist that calculate thousands of these descriptors, enabling general modeling typically with classical and machine learning methods. Also present today are learned representation methods in which deep learning models generate a target-specific representation during training. The former requires less training data and offers improved speed and interpretability while the latter offers excellent generality, while the intersection of the two remains under-explored. This paper introduces , a software package and general Deep-QSPR framework that combines a cogent set of molecular descriptors with deep learning to achieve state-of-the-art performance on datasets ranging from tens to tens of thousands of molecules. provides both a user-friendly Command Line Interface and highly interoperable set of Python modules for the training and deployment of feedforward neural networks for property prediction. This approach yields improvements in speed and interpretability over existing methods while statistically equaling or exceeding their performance across most of the tested benchmarks. is designed with Research Software Engineering best practices and is free and open source, hosted at github.com/jacksonburns/fastprop.

Burns, Jackson W. (ORCID:0000000206579426)↗

ORION: Operational FoRecastIng Of INduced Seismicity

The Operational Forecasting of Induced Seismicity toolkit “ORION” (ORION) is an open-source, observation-based ensemble forecasting toolkit which is geared towards helping operators understand the seismic hazard (i.e., probabilistic assessment of the magnitude and frequency of induced seismic events) at a site. ORION analyzes how the seismic hazard evolves during injection and suggests possible mitigation strategies to employ if an earthquake that exceeds certain threshold is observed. Through its ensemble modeling approach, ORION leverages the benefits of statistical-, physics-, and machine learning-based forecasting methodologies, while reducing the impact of each model’s respective limitations. The ORION toolkit consists of an easy-to-use GUI interface that affords a user as much or as little interaction as desired. Advanced capabilities allow the user to upload local, high-precision earthquake catalogs, projected injection profiles and/or spatiotemporal estimates of pressure/stress, and to tune various model parameters. ORION will then provide a spatial and temporal ensemble forecast of seismicity defined as the probability of exceedance of a given earthquake magnitude over a forecast period. Additionally, ORION will provide probability distribution of the statistically derived maximum possible earthquake magnitude that may be expected. Finally, ORION will provide suggested operational management strategies (e.g. reduce injection volumes at specific wells) based on the level of hazard.

NRAP,NRAP Tools,ORION,Operational Forcasting of In↗

Recovery Act: Demonstration of a SOFC Generator Fueled by Propane to Provide Electrical Power to Real World Applications

The objective of this project provided with funds through the American Recovery and Reinvestment Act of 2009 (ARRA) was to demonstrate a Solid Oxide Fuel Cell (SOFC) generator capable of operation on propane fuel to improve efficiency and reduce emissions over commercially available portable generators. The key objectives can be summarized as: Development of two portable electrical generators in the 1-3kW range utilizing Solid Oxide Fuel Cells and propane fuel; The development and demonstration of a proof-of-concept electro-mechanical propane fuel interface that provides a user friendly capability for managing propane fuel; The deployment and use of the fuel cell portable generators to power media production equipment over the course of several months at multiple NASCAR automobile racing events; The deployment and use of the fuel cell portable generators at scheduled events by first responders (police, fire) of the City of Folsom California; and Capturing data with regard to the systems’ ability to meet Department of Energy (DOE) Technical Targets and evaluating the ease of use and potential barriers to further adoption of the systems.

30 DIRECT ENERGY CONVERSION↗

Wire Arc Additive Manufacturing

Project highlight. This project designs and implements a new additive manufacturing capability at Savannah River National Laboratory. Wire Arc Additive Manufacturing is an Advanced Manufacturing technology that enables materials and energy savings by producing materials that are in near net shapes to minimize material losses compared to conventional forging and machining techniques. Wire arc additive manufacturing is an evolving technology that can be used to fabricate large components with significantly less materials waste than conventional processing. This project includes an engineering model, an aspect that is largely overlooked in the Additive Manufacturing modeling work where the emphasis has been on mechanistic and microscopic modeling, to estimate the residual stresses and distortions. The Abaqus Weld Interface software coupled with user subroutines in Fortran enable the local cooling rates to be estimated to provide a coarse scale model for the secondary dendrite arm spacing, a parameter useful to estimate mechanical properties.

36 MATERIALS SCIENCE↗

Code and Solution Verification Assessment of the CTF Thermal Hydraulic Subchannel Code

CTF is a thermal-hydraulics subchannel code jointly developed by Oak Ridge National Laboratory and North Carolina State University. Over the past seven years, the Consortium for Advanced Simulation of Light Water Reactors (CASL) has made a significant investment in developing CTF so it can be used to model light water reactors, including nominal operating conditions, departure from nucleate boiling analysis, and transients ranging from loss of flow to reactivity insertion accidents. In addition to implementing new modeling capabilities and developing the user input and output interface, extensive work has been performed to improve the code’s quality assurance program, resulting in a development process that conforms with NQA-1 requirements. The CASL program follows the Predictive Capability Maturity Model (PCMM) approach for assessing code quality, which emphasizes performing code verification(ensuring the code converges to the correct answer) and solution verification (ensuring the code converges for the intended application). Code and solution verification are used to identify uncertainty errors introduced by numerical approximations in the code and are important for demonstrating that the model is coded without error, which is an important aspect of the Best Estimate plus Uncertainty method. This paper presents a comprehensive overview of the code and solution verification testing that has been performed on CTF. A top-down approach is taken in which the intended CTF applications are presented, followed by the code features required for their modeling. These features are then linked to the applicable code and solution verification tests that demonstrate proper functioning. Past testing efforts are summarized, and new tests are added to help close gaps in the presented test matrix. Rather than performing “one-off” exercises, these tests are added to the automated CTF regression test suite to ensure continual code quality.

21 SPECIFIC NUCLEAR REACTORS AND ASSOCIATED PLANTS↗

A Computational Tool Compatible with NEAMS Code Packages for Optimizing the Shape of Nuclear Reactor Components and of Whole Core Performance

We designed and implemented a shape optimization tool that functions with NEAMS codes, and that nuclear scientists and engineers can employ to optimize the shape of individual components and the whole core under the applicable single- or multi-physics model comprising the employed code(s). The shape-optimization tool enables varying the geometric shape itself as well as its dimensions to yield, potentially, new component designs that are not limited by the designer’s intuition and previous experience. In cases where the optimal-shape object is an individual component, we provide the capability for additional verification that the whole-core performance using the optimized component performs better, under the prescribed optimization criteria, than the initial design. Our shape-optimization tool couples to NEAMS codes via a flexible input- composer interface and enables the user to constrain the shape’s evolution to ensure the component’s manufacturability. Finally, we demonstrate our shape-optimization tool with single- and multi-physics NEAMS codes. This objective is motivated by the recent advances in manufacturing technology that, combined with rising interest in novel reactor concepts, are creating new opportunities for innovation in the design of individual components that affect the performance of the full reactor system. In particular, Additive Manufacturing (AM) enables mass production of highly precise, intricate and complex component shapes that are not feasible with traditional manufacturing techniques. To accomplish this goal we developed and implemented in MOOSE: (1) discrete shape optimization capability based on a state-space search that uses Artificial Intelligence strategies to find the optimal state/shape; (2) smooth shape optimization tool that employs PETSc’s toolkit for advanced optimization (TAO) to optimize node-displacement of the components’ model sidesets; (3) hierarchical core optimization workflow that recognizes the repeating patterns typical in a nuclear reactor and performs the optimization one level at a time with increasing length scale. Each of these tools is equipped with user-specified constraints to avoid optimal shapes that are not manufacturable. The developed shape optimization tool is verified and demonstrated on various nuclear reactor core components and models. The optimization process accounts for tightly coupled physics that govern the behavior of these target reactors, and exercises several NEAMS codes in a coupled multiphysics fashion. The impact of the delivered shape optimization tool will materialize in the optimal design, from the outset, of advanced reactors currently contemplated to regain the US’s leadership in nuclear energy R&D. Novel reactor concepts, e.g. Molten Salt Reactors, and sizes/capacities, e.g. micro- reactors, provide a unique opportunity to optimize performance from the early stages of development, before the investment in components’ production lines, validation experiments, and licensing regimes make future improvements in performance prohibitively expensive and force sub-optimal performance on the affected reactor concept in perpetuity. This benefit will be realized by the delivered shape optimization tool regardless of the applicable manufacturing process whether traditional or AM, thereby broadening the impact of this project on current and future reactor concepts and technologies

11 - NUCLEAR FUEL CYCLE AND FUEL MATERIALS↗

Slow control and data acquisition systems in the Mu2e experiment

The Mu2e experiment at the Fermilab Muon Campus will search for the coherent neutrinolessconversion of a muon into an electron in the field of an aluminum nucleus with a sensitivityimprovement by a factor of 10,000 over existing limits. The Mu2e Trigger and Data AcquisitionSystem (TDAQ) usesotsdaqas the online Data Acquisition System (DAQ) solution. Developed atFermilab,otsdaqintegrates both theartdaqDAQ and theartanalysis frameworks for event transfer,filtering, and processing.otsdaqis an online DAQ software suite with a focus on flexibility andscalability and provides a multi-user, web-based, interface accessible through a web browser. Thedata stream from the detector subsystems is read by a software filter algorithm that selects eventswhich are combined with the data flux coming from a Cosmic Ray Veto System. The DetectorControl System (DCS) has been developed using the Experimental Physics and Industrial ControlSystem (EPICS) open source platform for monitoring, controlling, alarming, and archiving. TheDCS System has been integrated intootsdaq. A prototype of the TDAQ and the DCS systems hasbeen built at Fermilab’s Feynman Computing Center. In this paper, we report on the progress ofthe integration of this prototype in the onlineotsdaqsoftware.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗