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Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.

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At least 127 records · Page 7
All sourcesNASA NTRSDOE OSTI
DOE OSTI2023

Deep learning methods for drug response prediction in cancer: Predominant and emerging trends

Cancer claims millions of lives yearly worldwide. While many therapies have been made available in recent years, by in large cancer remains unsolved. Exploiting computational predictive models to study and treat cancer holds great promise in improving drug development and personalized design of treatment plans, ultimately suppressing tumors, alleviating suffering, and prolonging lives of patients. A wave of recent papers demonstrates promising results in predicting cancer response to drug treatments while utilizing deep learning methods. These papers investigate diverse data representations, neural network architectures, learning methodologies, and evaluations schemes. However, deciphering promising predominant and emerging trends is difficult due to the variety of explored methods and lack of standardized framework for comparing drug response prediction models. To obtain a comprehensive landscape of deep learning methods, we conducted an extensive search and analysis of deep learning models that predict the response to single drug treatments. A total of 61 deep learning-based models have been curated, and summary plots were generated. Based on the analysis, observable patterns and prevalence of methods have been revealed. This review allows to better understand the current state of the field and identify major challenges and promising solution paths.

60 APPLIED LIFE SCIENCES↗
DOE OSTI2022

Snowmass Topical Group Summary Report: IF04 -- Trigger and Data Acquisition Systems

A trend for future high energy physics experiments is an increase in the data bandwidth produced from the detectors. Datasets of the Petabyte scale have already become the norm, and the requirements of future experiments -- greater in size, exposure, and complexity -- will further push the limits of data acquisition technologies to data rates of exabytes per seconds. The challenge for these future data-intensive physics facilities lies in the reduction of the flow of data through a combination of sophisticated event selection in the form of high-performance triggers and improved data representation through compression and calculation of high-level quantities. These tasks must be performed with low-latency (i.e. in real-time) and often in extreme environments including high radiation, high magnetic fields, and cryogenic temperatures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2022

Snowmass Topical Group Summary Report: IF04 -- Trigger and Data Acquisition Systems

A trend for future high energy physics experiments is an increase in the data bandwidth produced from the detectors. Datasets of the Petabyte scale have already become the norm, and the requirements of future experiments -- greater in size, exposure, and complexity -- will further push the limits of data acquisition technologies to data rates of exabytes per seconds. The challenge for these future data-intensive physics facilities lies in the reduction of the flow of data through a combination of sophisticated event selection in the form of high-performance triggers and improved data representation through compression and calculation of high-level quantities. These tasks must be performed with low-latency (i.e. in real-time) and often in extreme environments including high radiation, high magnetic fields, and cryogenic temperatures.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗
DOE OSTI2021

An overview of data tools for representing and managing building information and performance data

Building information modeling (BIM) has been widely adopted for representing and exchanging building data across disciplines during building design and construction. However, BIM's use in the building operation phase is limited. With the increasing deployment of low-cost sensors and meters, as well as affordable digital storage and computing technologies, growing volumes of data have been collected from buildings, their energy services systems, and occupants. Such data are crucial to help decision makers understand what, how, and when energy is consumed in buildings—a critical step to improving building performance for energy efficiency, demand flexibility, and resilience. However, practical analyses and use of the collected data are very limited due to various reasons, including poor data quality, ad-hoc representation of data, and lack of data science skills. To unlock value from building data, there is a strong need for a toolchain to curate and represent building information and performance data in common standardized terminologies and schemas, to enable interoperability between tools and applications. This study selected and reviewed 24 data tools based on common use cases of data across the building life cycle, from design to construction, commissioning, operation, and retrofits. The selected data tools are grouped into three categories: (1) data dictionary or terminology, (2) data ontology and schemas, and (3) data platforms. The data are grouped into ten typologies covering most types of data collected in buildings. This study resulted in five main findings: (1) most data representation tools can represent their intended data typologies well, such as Green Button for smart meter data and Brick schema for metadata of sensors in buildings and HVAC systems, but none of the tools cover all ten types of data; (2) there is a need for data schemas to represent the basis of design data and metadata of occupant data; (3) standard terminologies such as those defined in BEDES are only adopted in a few data tools; (4) integrating data across various stages in the building life cycle remains a challenge; and (5) most data tools were developed and maintained by different parties for different purposes, their flexibility and interoperability can be improved to support broader use cases. Finally, recommendations for future research on building data tools are provided for the data and buildings community based on the FAIR principles to make data Findable, Accessible, Interoperable, and Reusable.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗
DOE OSTI2020

Characterizing Sub-Cohorts via Data Normalization and Representation Learning

The process of identifying a cohort of interest is a very challenging task. It requires manually inspecting many patient records of complex structure that might include medical coding errors and missing data. This paper presents a computational pipeline for refining the process of cohort selection based on medical concepts recorded in the electronic health records (EHRs). The pipeline extracts EHR data for a given cohort and normalizes this data using standard vocabularies. Then a stacked denoising autoencoder is used to embed the normalized patient vectors in a low dimensional space, where the patients are subsequently clustered into sub-cohorts. The goal is to represent the cohort in a standard format and abstract variants of sub-populations. As a use-case, we applied the pipeline to 1.8 million Veterans diagnosed with major depressive disorder (MDD), and identified four meaningful sub-cohorts using the features learned by the autoencoder. Then, each sub-cohort was explored using a set of keywords for interpretation.

Rush III, Everett↗
DOE OSTI2014

The Materials Application Programming Interface (API): A simple, flexible and efficient API for materials data based on REpresentational State Transfer (REST) principles

Here in this paper, we describe the Materials Application Programming Interface (API), a simple, flexible and efficient interface to programmatically query and interact with the Materials Project database based on the REpresentational State Transfer (REST) pattern for the web. Since its creation in Aug 2012, the Materials API has been the Materials Project's de facto platform for data access, supporting not only the Materials Project's many collaborative efforts but also enabling new applications and analyses. We will highlight some of these analyses enabled by the Materials API, particularly those requiring consolidation of data on a large number of materials, such as data mining of structural and property trends, and generation of phase diagrams. We will conclude with a discussion of the role of the API in building a community that is developing novel applications and analyses based on Materials Project data.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2021

Data Science in Chemical Engineering: Applications to Molecular Science

Chemical engineering is being rapidly transformed by the tools of data science. On the horizon, artificial intelligence (AI) applications will impact a huge swath of our work, ranging from the discovery and design of new molecules to operations and manufacturing and many areas in between. Early adoption of data science, machine learning, and early examples of AI in chemical engineering has been rich with examples of molecular data science—the application tools for molecular discovery and property optimization at the atomic scale. Here, we summarize key advances in this nascent subfield while introducing molecular data science for a broad chemical engineering readership. We introduce the field through the concept of a molecular data science life cycle and discuss relevant aspects of five distinct phases of this process: creation of curated data sets, molecular representations, data-driven property prediction, generation of new molecules, and feasibility and synthesizability considerations.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2016

Data graphing methods, articles of manufacture, and computing devices

Data graphing methods, articles of manufacture, and computing devices are described. In one aspect, a method includes accessing a data set, displaying a graphical representation including data of the data set which is arranged according to a first of different hierarchical levels, wherein the first hierarchical level represents the data at a first of a plurality of different resolutions which respectively correspond to respective ones of the hierarchical levels, selecting a portion of the graphical representation wherein the data of the portion is arranged according to the first hierarchical level at the first resolution, modifying the graphical representation by arranging the data of the portion according to a second of the hierarchal levels at a second of the resolutions, and after the modifying, displaying the graphical representation wherein the data of the portion is arranged according to the second hierarchal level at the second resolution.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2025

Contrastive learning for robust representations of neutrino data

In neutrino physics, analyses often depend on large simulated datasets, making it essential for models to generalize effectively to real-world detector data. Contrastive learning, a well-established technique in deep learning, offers a promising solution to this challenge. By applying controlled data augmentations to simulated data, contrastive learning enables the extraction of robust and transferable features. This improves the ability of models trained on simulations to adapt to real experimental data distributions. In this paper, we investigate the application of contrastive learning methods in the context of neutrino physics. Through a combination of empirical evaluations and theoretical insights, we demonstrate how contrastive learning enhances model performance and adaptability. Additionally, we compare it to other domain adaptation techniques, highlighting the unique advantages of contrastive learning for this field. Published by the American Physical Society 2025

Wilkinson, Alex (ORCID:0000000253404506)↗
DOE OSTI2021

NeuralCubes: Deep Representations for Visual Data Exploration

Visual exploration of large multi-dimensional datasets has seen tremendous progress in recent years, allowing users to express rich data queries that produce informative visual summaries, all in real time. Techniques based on data cubes are some of the most promising approaches. However, these techniques usually require a large memory footprint for large datasets. To tackle this problem, we present NeuralCubes: neural networks that predict results for aggregate queries, similar to data cubes. NeuralCubes learns a function that takes as input a given query, for instance, a geographic region and temporal interval, and outputs the result of the query. The learned function serves as a real-time, low-memory approximator for aggregation queries. Our models are small enough to be sent to the client side (e.g. the web browser for a web-based application) for evaluation, enabling data exploration of large datasets without database/network connection. Here, we demonstrate the effectiveness of NeuralCubes through extensive experiments on a variety of datasets and discuss how NeuralCubes opens up opportunities for new types of visualization and interaction.

97 MATHEMATICS AND COMPUTING↗
DOE OSTI2015

Complik: A versatile tool for automatizing the representation of material data in MCNP models - 14412

At the Paul Scherrer Institut, the CASMO/SIMULATE code system is used as reference scheme for core analyses of the Swiss reactors. Besides, Monte Carlo (MC) based neutron transport codes are in parallel being established both for out-of-core applications and full core analyses, in order to provide higher fidelity solutions to problems beyond the modelling capabilities of the standard core modelling methods. In this perspective, a necessity is to be able to conduct the MC calculations at any operating conditions, requiring thus proper initialisation of the thermal-hydraulic feedback as well as at any burnup, prompting the need for a detailed modelling of all material zones in the irradiated fuel assemblies. To tackle the later challenge, the development of the COMPLINK tool, aimed at initialising large-scale MC models of burned core configurations, using as basis upstream 2-D assembly/ 3-D core analyses results, was initiated and is presented in this paper. A main feature is the capability to extend in an automatic manner, a user given MC model in order to represent material data with a higher resolution, keeping track of the location of such materials also within nested repeated structures. This capability prevents the user from the burden of developing specific computational framework for a target application. Since the same functionalities are required to analyse out-of-core spent fuel managements systems, a first verification of COMPLINK is illustrated on the basis of a criticality safety evaluation (CSE) with MCNP6.1 of a Swiss PWR wet storage pool loaded with fresh and burned fuel assemblies. Starting from CASMO-5 depletion calculations at each axial layer of the depleted fuel assemblies and reconstructed based on realistic irradiation histories, COMPLINK is then applied to load the isotopic compositions into the material zones of the corresponding MCNP6.1 assembly models. On this basis, the CSE analyses are conducted with focus on investigating axial and radial modelling effects. All in all, the obtained results are found to be well in line with the impact on CSE expected at the considered burnup levels, providing thus confidence in the correct implementation of the COMPLINK functionalities and confirming its effectiveness as well as efficiency for the initialization of all material zones in large-scale MC models of complex and strongly heterogeneous burned configurations. (authors)

42 ENGINEERING↗
DOE OSTI2014

Examining thermal transport through a frequency-domain representation of time-domain thermoreflectance data

Laser-based time-domain thermoreflectance (TDTR) and frequency-domain thermoreflectance (FDTR) techniques are widely used for investigating thermal transport at micro- and nano-scales. We demonstrate that data obtained in TDTR measurements can be represented in a frequency-domain form equivalent to FDTR, i.e., in the form of a surface temperature amplitude and phase response to time-harmonic heating. Such a representation is made possible by using a large TDTR delay time window covering the entire pulse repetition interval. We demonstrate the extraction of frequency-domain data up to 1 GHz from TDTR measurements on a sapphire sample coated with a thin layer of aluminum, and show that the frequency dependencies of both the amplitude and phase responses agree well with theory. The proposed method not only allows a direct comparison of TDTR and FDTR data, but also enables measurements at high frequencies currently not accessible to FDTR. The frequency-domain representation helps uncover aspects of the measurement physics which remain obscured in a traditional TDTR measurement, such as the importance of modeling the details of the heat transport in the metal transducer film for analyzing high frequency responses.

47 OTHER INSTRUMENTATION↗
DOE OSTI2020

Thermochemical Data Fusion Using Graph Representation Learning

Large databases are required for “Big Data” applications in catalysis and materials science. Thermochemical databases can be created by combining data from various sources and by correcting low-fidelity datasets to higher accuracy with minimal computation. To achieve this “data fusion”, thermochemical quantities of interest, calculated at various levels of density functional theory (DFT), need to be mapped to the same, high levels of theory. In this work, a graph theoretical, statistical framework is proposed for such tasks. Subgraph frequencies are shown to provide a natural representation for learning these fusion maps. The maps are linear and are learnt with automated descriptor selection. Using a dataset of as few as ~1% from the QM9 database of 133,885 molecules, these models can predict multiple thermochemical quantities at a higher level of theory with an accuracy of 1 kcal/mol. Here, the method is explainable, generalizable, and provides a diagnostic tool for outlier identification

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗
DOE OSTI2026

Multi-resolution enhancement for full-spectrum neural representations

Scientific data acquisition continues to outpace storage and analysis capabilities, making voxel-basedrepresentations increasingly intractable. Implicit neural representations (INRs) offer a promising solutionby encoding signals through coordinate-based neural networks, serving as surrogates of data, withcomputational and storage requirements scaling with network complexity rather than data dimensionality.However, smaller INRs struggle to faithfully represent multiscale structures, high-frequency informationand fine textures that constitute a large proportion of scientific measurements. We propose WIEN-INR, atheoretically guided hierarchical INR framework that distributes modelling across resolution scales andenables improved representation capacity through a novel enhancement network to recover subtle details.This multiscale architecture allows smaller networks to retain the full spatial-frequency content of thesignal as well as preserve training efficiency and lower storage cost. Evaluated on distinct raw experimentalmeasurements across scales and complexities, WIEN-INR represents a practical step towards a broaderadoption of neural representations in scientific workflows, delivering compact, robust and high-fidelityrepresentations.

Ni, Yuan [SLAC National Accelerator Laboratory (SL↗