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Medical Database Accomplishments and Lessons Learned - 2021

The Medical Database (MD) is a virtual repository consisting of two software components: the Medical Item Database (MedID) and the Evidence Library (EL). MedID consists of engineering data and associated information for specific medical resource items (e.g., pharmaceutical, medical devices, and supporting components), while the EL is a tool which provides all of the medical evidence necessary. The Medical Database will serve as the single “source of truth” for the Informing Mission Planning via Analysis of Complex Tradespaces (IMPACT) tool suite for both medical evidence and medical resource engineering data. It will be used in conjunction with the IMPACT tool suite to inform research prioritizations and perform systematic trade study evaluations using probabilistic risk assessment and simulated human spaceflight missions to aid stakeholders in making informed decisions during Pre-Phase-A planning of human spaceflight missions. The IMPACT project is conducted under the Exploration Medical Capability (ExMC) element of the Human Research Program (HRP), within NASA’s Human Exploration and Operations Mission Directorate. Over the past year, the MedID software has been successfully merged with the Evidence Library into one cohesive Medical Database with two independent user interface experiences for modifying either clinical evidence or resource engineering data. As MD has evolved substantially over the past year, a number of challenges have been encountered and overcome along the way. A number of ‘lessons learned’ and practical/logistical realizations have emerged which will be detailed in the forthcoming Medical Database presentation.

Exploration Medical Capability

The Io GIS Database 1.0: A Proto-Io Planetary Spatial Data Infrastructure

We collected a set of published, higher-order data products of Jupiterʼs volcanic moon Io and assembled them in an ArcGISTM database we are calling the Io GIS Database, version 1.0. The purpose of this database is to collect image, topographic, geologic, and thermal emission data of Io in one geospatially registered location to form the data component of an Io planetary spatial data infrastructure (PSDI). The goals of an Io PSDI are (1) to make higher-order data products more accessible and usable to the broader planetary science community, particularly to new scientists that were not associated with the projects that obtained the data; (2) to enable new scientific studies with the data; and (3) to create a tool to support observation planning for future Io-focused planetary missions. In this paper we describe the motivation behind our project, discuss the data sets acquired for this first version of the database, and demonstrate how they can be used. We conclude with a discussion of how our database relates to other PSDIs, our plans for future updates, and a request for additional Io data sets.

David A Williams

Comparisons of Performance Metrics and Machine Learning Methods on an Entry Descent and Landing Database

This work focuses on evaluating machine learning methods and their applicability to the generation of an aerodynamic database, particularly for trajectory analysis of a capsule during entry, descent, and landing with a focus on uncertainty quantification. The source data to be used is the wind tunnel and computational data for the Integrated Design Assessment Team (IDAT) configuration of the Orion project, which has been publicly released. The methods used to generate the proposed databases are designed to naturally include a prediction interval, which will be evaluated both for their mean response as well as how well the prediction interval performs. These machine learning methods are compared to a traditionally generated database used by the Orion team as a baseline. It is found that while these machine learning methods perform well, the Orion database tends to still outperform them showing that engineering experience is still needed to make the best database possible. However, these methods still provide comparable results with significantly less effort.

Orion

Comparisons of Performance Metrics and Machine Learning Methods on an Entry, Descent, and Landing Database

This work focuses on evaluating machine learning methods and their applicability to the generation of an aerodynamic database, particularly for trajectory analysis of a capsule during entry, descent, and landing with a focus on uncertainty quantification. The source data to be used is the wind tunnel and computational data for the Integrated Design Assessment Team (IDAT) configuration of the Orion project, which has been publicly released. The methods used to generate the proposed databases are designed to naturally include a prediction interval, which will be evaluated both for their mean response as well as how well the prediction interval performs. These machine learning methods are compared to a traditionally generated database used by the Orion team as a baseline. It is found that while these machine learning methods perform well, the Orion database tends to still outperform them showing that engineering experience is still needed to make the best database possible. However, these methods still provide comparable results with significantly less effort.

Orion

Extracting Lessons of Resilience Using Machine Mining of the ASRS Database

NASA’s Aviation Safety Reporting System (ASRS) database is the world's largest repository of voluntary, confidential safety information provided by aviation's frontline personnel, including pilots, air traffic controllers, mechanics, flight attendants, dispatchers, and other members of the aviation community and the public. The database contains close to 2 million narratives, many of which describe everyday situations in which people saved the day. In these situations, people’s resilient behavior solved a problem, dealt with a malfunction, and maintained a safe operation despite a serious perturbation. To be able to extract lessons of such resilience from this large database, the use of machine learning algorithms is being explored. In this report, we describe a comparison between two such algorithms: Perilog and Word2Vec. An identical search using both programs was done on a database containing approximately 470,000 ASRS reports submitted between 1988 and 2022. The comparison reveals some of the strength and weaknesses of each algorithm as well as the challenges inherent in using such algorithms to extract lessons of resilience from the ASRS database.

resilience

Developing a Hail and Wind Damage Swath Event Database from Daily MODIS True Color Imagery and Storm Reports for Impact Analysis and Applications

Hail and damaging winds are two threats associated with intense and severe thunderstorms that traverse the Midwest and Great Plains during the primary growing season. In certain severe thunderstorm events, large swaths of agricultural crops are impacted, allowing the damage to be viewed from multiple satellite remote sensing platforms. Previous studies have focused on analyzing individual hail and wind damage swaths (HWDSs) using satellite remote sensing, but these swaths have never been officially archived or documented. This lack of documentation has made it difficult to analyze the spatial extent and temporal frequency of HWDSs from year to year. This study utilizes daily true color imagery from MODIS aboard NASA’s Terra and Aqua satellites and daily local storm reports from the Storm Prediction Center to build a database of HWDSs occurring in the months of May through August, for years 2000 through 2020. This database identified 1,646 HWDSs in 12 states throughout the Midwest and Great Plains, confirmed through a combination of archived severe weather warnings, radar information, and official storm reports. For each entry in the HWDS database, a geospatial outline is provided along with the most likely date of first visible damage from MODIS imagery as well as the physical characteristics and time of occurrence estimated from available warnings. This study also provides a summary of the radar characteristics for a portion of the database. This database will further the understanding of severe weather damage by hail and wind to agriculture to help understand the frequency of these events and assist in mapping the impacted areas.

Climatology

Implementation of A New Microwave Scattering Database and A Forward Model for Active Microwave Sensors in CRTM

Radiative transfer models are extensively used for the assimilation of satellite observations into NWP models as well as retrieving geophysical products from satellite measurements. CRTM is a community model developed by NOAA JCSDA and widely used for different purposes requiring RT calculations. CRTM requires bulk scattering lookup tables in order to perform all-sky RT calculations. However, the current CRTM lookup tables for microwave frequencies were generated based on the Mie theory by assuming spherical frozen particles. The scattering lookup tables generated using the DDA technique has shown to largely improve the RT scattering calculations in the MW region. This presentation targets (i) the implementation and validation of a DDA database that was originally developed for the ARTS RT model into CRTM, and (ii) developing the CRTM active sensor module that takes advantage of the backscattering coefficients computed using the DDA method. The DDA database only provides single scattering properties of different habits, while CRTM requires bulk scattering properties. The CRTM cloud coefficients were previously generated based on the effective radius for representing the size of the particles. However, effective radius is neither measurable nor provided by the NWP models, thus need to be estimated from other geophysical variables such as water content. Therefore, in addition to calculating the CRTM bulk scattering properties from the DDA single scattering database, the CRTM was also largely modified to use cloud water content (kg.m-3), instead of effective radius, for performing the interpolation over size/mass of the particles. CRTM already requires water content as input, thus no extra variables are required for performing scattering calculations using the new ARTS DDA database. The CRTM scattering modules search for effective radius in cloud coefficient files and will use the cloud water content if the effective radius dimension is not found in the cloud coefficient files. Figure 1 shows the CRTM simulated brightness temperatures computed using different cloud coefficients versus ATMS observed values over Hurricane Irma on September 7, 2017 at 18:00 UTC. We used all the cloud water content values included in ERA5 with default CRTM/DDA habits for water, rain, snow, ice, hail, and graupel. ERA5 does not provide separate water content values for ice, hail, and graupel, thus the ice water content values were divided between ice, hail, and graupel clouds similar to what was explained in the previous section. In channels with a frequency lower than 90 GHz, emission from water and rain clouds can compensate for cloud scattering so that cloud contaminated Tbs are larger than corresponding clear sky Tbs. The DDA simulations for channels 1-7 largely perform better than the Mie simulations. The DDA simulations show a mix of small negative and positive simulated minus observed values, while the Mie results show large negative biases. The weighting functions for some of the ATMS temperature sounding channels (channels 9-15) peak mostly above the clouds, therefore the measured Tbs become less sensitive to clouds so that the results of both Mie and DDA become very similar. The Mie lookup tables generate excessive scattering for channel 16, but not enough scattering for the water vapor channels. In the specific case of Hurricane Maria, the DDA lookup tables do not generate enough scattering for channel 16, but the DDA results are much more consistent with observations for water vapor channels than for channel 16. It should be noted that the results may vary if we use other habits to represent snow, hail, and graupel in the DDA simulations. Although these results clearly show the advantage of the DDA database over the Mie dataset, different error sources such as error in the observations, displacement of clouds in the ERA5 reanalysis, and also lack of convective clouds or in general errors in the input atmospheric and cloud profiles contribute to the differences between the simulated and observed values. Aside from the improvements in the simulations, a major advantage of the new dataset is a large number of habits that can be used to tune the data assimilation systems to perform well in different weather conditions.

Isaac Moradi

MIMIC II: a massive temporal ICU patient database to support research in intelligent patient monitoring

Development and evaluation of Intensive Care Unit (ICU) decision-support systems would be greatly facilitated by the availability of a large-scale ICU patient database. Following our previous efforts with the MIMIC (Multi-parameter Intelligent Monitoring for Intensive Care) Database, we have leveraged advances in networking and storage technologies to develop a far more massive temporal database, MIMIC II. MIMIC II is an ongoing effort: data is continuously and prospectively archived from all ICU patients in our hospital. MIMIC II now consists of over 800 ICU patient records including over 120 gigabytes of data and is growing. A customized archiving system was used to store continuously up to four waveforms and 30 different parameters from ICU patient monitors. An integrated user-friendly relational database was developed for browsing of patients' clinical information (lab results, fluid balance, medications, nurses' progress notes). Based upon its unprecedented size and scope, MIMIC II will prove to be an important resource for intelligent patient monitoring research, and will support efforts in medical data mining and knowledge-discovery.

NASA Discipline Cardiopulmonary

Experimental Database with Baseline CFD Solutions: 2-D and Axisymmetric Hypersonic Shock-Wave/Turbulent-Boundary-Layer Interactions

A database compilation of hypersonic shock-wave/turbulent boundary layer experiments is provided. The experiments selected for the database are either 2D or axisymmetric, and include both compression corner and impinging type SWTBL interactions. The strength of the interactions range from attached to incipient separation to fully separated flows. The experiments were chosen based on criterion to ensure quality of the datasets, to be relevant to NASA's missions and to be useful for validation and uncertainty assessment of CFD Navier-Stokes predictive methods, both now and in the future. An emphasis on datasets selected was on surface pressures and surface heating throughout the interaction, but include some wall shear stress distributions and flowfield profiles. Included, for selected cases, are example CFD grids and setup information, along with surface pressure and wall heating results from simulations using current NASA real-gas Navier-Stokes codes by which future CFD investigators can compare and evaluate physics modeling improvements and validation and uncertainty assessments of future CFD code developments. The experimental database is presented tabulated in the Appendices describing each experiment. The database is also provided in computer-readable ASCII files located on a companion DVD.

Database

ThermoBase: A Database of the Phylogeny and Physiology of Thermophilic and Hyperthermophilic Organisms

Thermophiles and hyperthermophiles are those organisms which grow at high temperature (> 40°C). The unusual properties of these organisms have received interest in multiple fields of biological research, and have found applications in biotechnology, especially in industrial processes. However, there are few listings of thermophilic and hyperthermophilic organisms and their relevant environmental and physiological data. Such repositories can be used to standardize definitions of thermophile and hyperthermophile limits and tolerances and would mitigate the need for extracting organism data from diverse literature sources across multiple, sometimes loosely related, research fields. Therefore, we have developed ThermoBase, a web-based and freely available database which currently houses comprehensive descriptions for 1238 thermophilic or hyperthermophilic organisms. ThermoBase reports taxonomic, metabolic, environmental, experimental, and physiological information in addition to literature resources. This includes parameters such as coupling ions for chemiosmosis, optimal pH and range, optimal temperature and range, optimal pressure, and optimal salinity. The database interface allows for search features and sorting of parameters. As such, it is the goal of ThermoBase to facilitate and expedite hypothesis generation, literature research, and understanding relating to thermophiles and hyperthermophiles within the scientific community in an accessible and centralized repository. ThermoBase is freely available online at the Astrobiology Habitable Environments Database (AHED; https://ahed.nasa.gov), at the Database Center for Life Science (TogoDB; http://togodb.org/db/thermobase), and in the S1 File.

Thermophiles

Comparison of Entry Descent and Landing Aerodynamic Databases with Uncertainty Quantification Developed Using Machine Learning Techniques

When developing the aerodynamic databases for use in trajectory simulations, it is important to develop a system of metrics to qualify which aerodynamic models are best to use. Since aerodynamics are just one input into trajectory simulations, the results of these simulations do not reflect on the quality of the aerodynamic database used. This means that aerodynamic database comparisons must be done offline. While traditional metrics that focus on mean/nominal predictions are a good first step, more robust estimates of the prediction interval become important as more focused uncertainty models are developed. We explore the limitations of evaluating aerodynamic models based purely on nominal-centered response surfaces. Before elaborating and evaluating metrics based on distributed models, the value of evaluating prediction interval and confidence interval are discussed to conclude that prediction intervals are more relevant to the use of trajectory analysis. Several metrics to evaluate the prediction interval are introduced with a focus on the standard calibration metric. Finally, we compare candidate models using both mean and distributed metrics. A finalized candidate model developed using state of the art machine learning methods is compared to a baseline model developed using traditional aerodynamic database modeling techniques.

Aerodynamic Database

Improved Aerothermal Reliability Analysis Enabled by the Mars Sample Return Earth Entry System Aerothermal Database

The Mars Sample Return (MSR) campaign is a series of missions designed to retrieve Martian rock and soil samples for detailed study on Earth. The campaign is split into three primary phases: sample collection with the Mars2020 rover, retrieval with the Sample Return Lander (SRL) and Mars Ascent Vehicle (MAV), and then return to Earth with the Earth Return Orbiter (ERO) and Capture, Containment, and Return System (CCRS) [1]. The final sequence in the Earth return phase is the delivery and entry of the Earth Entry System (EES) sample return capsule. Due to unprecedented planetary protection concerns, the sample return capsule is subject to strict reliability requirements. To this end, the MSR-EES aerothermal team has implemented a flexible aerothermal database architecture capable of integration with state-of-the-art trajectory codes to provide a more rigorous aerothermal reliability analysis. The EES database enables the generation of environments at any location on the heatshield and can incorporate trajectory uncertainties to both statistically quantify aerothermal environments for arcjet testing and produce material response boundary conditions to rigorously select thermal protection system (TPS) sizing environments. This poster will not discuss the fundamental modeling assumptions included in the database, and will instead focus on the downstream reliability analyses that can be performed with a database of this architecture.

MSR-EES

Precedency control and other semantic integrity issues in a workbench database

Most database systems model the current state of a system of real world discrete and simple entities together with their relationships. By examining instead a database system that is a workbench and models more complicated entities, a fresh perspective is gained. Specifically, semantic integrity is analysed. Four aspects distinct from physical integrity are identified, namely - access, failure, concurrency and precedency. Access control is shown to be the consequence of semantic interdependency between data and its matching semantic routines. Failure, concurrency precedency controls are concerned with preventing processes interfering with each other. Precedency is a new concept in the database context. It expresses a constraint between processes that act on the database. As processes create, update and delete entities they in general obey a partial ordering imposed by the semantics of their actions. Precedency control ensures that data remains consistent with respect to this partial order.

Dampney, C. N. G.

The final COS-B database now publicly available

The data obtained by the gamma ray satellite COS-B was processed, condensed and integrated together with the relevant mission and experiment parameters into the Final COS-B Database. The database contents and the access programs available with the database are outlined. The final sky coverage and a presentation of the large scale distribution of the observed Milky Way emission are given. The database is announced to be available through the European Space Agency.

Mayer-Hasselwander, H. A.

Idiot sheets - Preparing and using Database guide sheets

In connection with the utilization of databases, problems can arise with respect to the understanding or evaluation of the provided information. Database guide sheets can be an important aid for overcoming these problems. A number of systems are already sufficiently documented by guide sheets, while other systems do not have guide sheets with adequate descriptive information. Details regarding database guide sheets are discussed, taking into account the type of descriptive information provided, the sample online record, and access points and other related functions for searching the database. Attention is given to cases when a guide sheet should be made, details regarding the preparation of such a sheet, the importance of neatness, and important points which should be kept in mind when guide sheets are being prepared.

Jack, R. F.

Generative engineering databases - Toward expert systems

Engineering data management, incorporating concepts of optimization with data representation, is receiving increasing attention as the amount and complexity of information necessary for performing engineering operations increases and the need to coordinate its representation and use increases. Research in this area promises advantages for a wide variety of engineering applications, particularly those which seek to use data in innovative ways in the engineering process. This paper presents a framework for a comprehensive, relational database management system that combines a knowledge base of design constraints with a database of engineering data items in order to achieve a 'generative database' - one which automatically generates new engineering design data according to the design constraints stored in the knowledge base. The representation requires a database that is able to store all of the data normally associated with engineering design and to accurately represent the interactions between constraints and the stored data while guaranteeing its integrity. The representation also requires a knowledge base that is able to store all the constraints imposed upon the engineering design process.

Rasdorf, W. J.

Bibliographic databases in support of space processing research

The growth in the number and variety of online bibliographic databases has had two notable impacts on the research community: literature is more readily available to the individual researcher, but the researcher must become more familiar with databases in order to fully exploit them. This presentation provides an overview of online information retrieval; identifies some databases which provide citations to literature relevant to space processing; and offers suggestions regarding how to obtain database search services or additional information.

Jack, Robert F.

A Vibroacoustic Database Management Center for Shuttle and expendable launch vehicle payloads

A Vibroacoustic Database Management Center has recently been established at the Jet Propulsion Laboratory (JPL). The center uses the Vibroacoustic Payload Environment Prediction System (VAPEPS) computer program to maintain a database of flight and ground-test data and structural parameters for both Shuttle and expendable launch-vehicle payloads. Given the launch-vehicle environment, the VAPEPS prediction software, which employs Statistical Energy Analysis (SEA) methods, can be used with or without the database to establish the vibroacoustic environment for new payload components. This paper summarizes the VAPEPS program and describes the functions of the Database Management Center at JPL.

Thomas, Valerie C.