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At least 127 records · Page 7

AEOLUS: A MARKOV CHAIN MONTE CARLO CODE FOR MAPPING ULTRACOOL ATMOSPHERES. AN APPLICATION ON JUPITER AND BROWN DWARF HST LIGHT CURVES

Deducing the cloud cover and its temporal evolution from the observed planetary spectra and phase curves can give us major insight into the atmospheric dynamics. In this paper, we present Aeolus, a Markov chain Monte Carlo code that maps the structure of brown dwarf and other ultracool atmospheres. We validated Aeolus on a set of unique Jupiter Hubble Space Telescope (HST) light curves. Aeolus accurately retrieves the properties of the major features of the Jovian atmosphere, such as the Great Red Spot and a major 5 μm hot spot. Aeolus is the first mapping code validated on actual observations of a giant planet over a full rotational period. For this study, we applied Aeolus to J- and H-band HST light curves of 2MASS J21392676+0220226 and 2MASS J0136565+093347. Aeolus retrieves three spots at the top of the atmosphere (per observational wavelength) of these two brown dwarfs, with a surface coverage of 21% ± 3% and 20.3% ± 1.5%, respectively. The Jupiter HST light curves will be publicly available via ADS/VIZIR.

79 ASTRONOMY AND ASTROPHYSICS↗

V&V Integrated Program Planning for Wind Plant Performance

The Department of Energy Atmosphere to Electrons (A2e) initiative has undertaken an experimental planning process for a validation directed program and an experimental planning process directed at improving simulations of wind plant performance. The validation process has been divided into two main sections: Integrated Program Planning, and Integrated Experiment and Model Planning and Execution. This document covers the Integrated Program Planning process in detail as it has been applied to the validation and assessment of models of various fidelity to predict wind plant performance. Three main parts of this process are presented in this document: the Phenomenon Identification and Ranking Table, the Validation Hierarchy, and the Prioritized Phenomenon and Experiment Mapping table. The document concludes with a description of validation program process next steps, which includes the planning and execution of integrated experiment and model campaigns

17 WIND ENERGY↗

Validation of Innovative Exploration Technologies for Newberry Volcano: Drill Site Location Map

Newberry seeks to explore "blind" (no surface evidence) convective hydrothermal systems associated with a young silicic pluton on the flanks of Newberry Volcano. This project will employ a combination of innovative and conventional techniques to identify the location of subsurface geothermal fluids associated with the hot pluton. Newberry project drill site location map 2010. This submission contains a topographic drill site location map.

15 GEOTHERMAL ENERGY↗

Metrics for comparison of crystallographic maps

Numerical comparison of crystallographic contour maps is used extensively in structure solution and model refinement, analysis and validation. However, traditional metrics such as the map correlation coefficient (map CC, real-space CC or RSCC) sometimes contradict the results of visual assessment of the corresponding maps. This article explains such apparent contradictions and suggests new metrics and tools to compare crystallographic contour maps. The key to the new methods is rank scaling of the Fourier syntheses. The new metrics are complementary to the usual map CC and can be more helpful in map comparison, in particular when only some of their aspects, such as regions of high density, are of interest.

36 MATERIALS SCIENCE↗

Advanced silicon tracking detector developments for the future Electron-Ion Collider

The proposed Electron-Ion Collider (EIC) will operate high-luminosity high-energy electron+proton and electron+nucleus collisions at the collision energies from 20 GeV to 141 GeV to solve several fundamental questions in the high energy and nuclear physics fields. Its instantaneous luminosity can reach 10 33-34 cm -2 s -1 and the bunching crossing rate is around 10 ns. The EIC project has received CD1 approval from the US DOE in 2021 and moves toward the machine design and preparation for construction. To realize various particle measurements with high precision at the future EIC, a low material-budget and high-granularity silicon vertex and tracking detector with fine spatial and momentum resolutions and nearly 4π solid angle coverage is desired. The Monolithic Active Pixel Sensor (MAPS) and AC Coupled Low Gain Avalanche Diode (AC-LGAD) technologies stand out of several advanced technology options for the EIC silicon vertex and tracking detector subsystems. The MAPS technology has advanced features of low material budget, low power consumption, good radiation resistance and fine spatial resolution. The AC-LGAD technology can achieve fast timing resolution. Latest studies and progress of the EIC silicon vertex and tracking detector conceptual design, performance validations in simulation and ongoing MAPS and AC-LGAD R&D will be shown. Furthermore, schedule and plan of the EIC project detector development will be discussed as well.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Structural variant analysis of a cancer reference cell line sample using multiple sequencing technologies

The cancer genome is commonly altered with thousands of structural rearrangements including insertions, deletions, translocation, inversions, duplications, and copy number variations. Thus, structural variant (SV) characterization plays a paramount role in cancer target identification, oncology diagnostics, and personalized medicine. As part of the SEQC2 Consortium effort, the present study established and evaluated a consensus SV call set using a breast cancer reference cell line and matched normal control derived from the same donor, which were used in our companion benchmarking studies as reference samples. We systematically investigated somatic SVs in the reference cancer cell line by comparing to a matched normal cell line using multiple NGS platforms including Illumina short-read, 10X Genomics linked reads, PacBio long reads, Oxford Nanopore long reads, and high-throughput chromosome conformation capture (Hi-C). We established a consensus SV call set of a total of 1788 SVs including 717 deletions, 230 duplications, 551 insertions, 133 inversions, 146 translocations, and 11 breakends for the reference cancer cell line. To independently evaluate and cross-validate the accuracy of our consensus SV call set, we used orthogonal methods including PCR-based validation, Affymetrix arrays, Bionano optical mapping, and identification of fusion genes detected from RNA-seq. We evaluated the strengths and weaknesses of each NGS technology for SV determination, and our findings provide an actionable guide to improve cancer genome SV detection sensitivity and accuracy. A high-confidence consensus SV call set was established for the reference cancer cell line. A large subset of the variants identified was validated by multiple orthogonal methods.

59 BASIC BIOLOGICAL SCIENCES↗

Impact of CMS Multi-jets and Missing Energy Search on CMSSM Fits

Recent CMS data significantly extend the exclusion limits for supersymmetry. We examine the impact of such data on global fits of the constrained minimal supersymmetric standard model (CMSSM) to indirect and cosmological data. By simulating supersymmetric signal events at the LHC, we construct a likelihood map for the recent CMS data, validating it against the exclusion region calculated by the experiment itself. A previous CMSSM global fit is then reweighted by our likelihood map. The CMS results nibble away at the high fit probability density region, transforming probability distributions for the scalar and gluino masses. The CMS search has a nontrivial effect on tan{beta} due to correlations between the parameters implied by the fits to indirect data.

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Geographic Information System Tools for Management of US DOE Sites - 13489

The DOE Office of Legacy Management (LM) uses a variety of GIS tools to support long-term surveillance and maintenance (LTS and M) activities at DOE closure sites. These geo-spatial applications provide access to data both for external public viewing and for internal analysis and decision making. LM uses a custom geo-spatial application called geo-spatial Environmental Mapping System (GEMS) that draws validated information from a database of 4.6 million analytical results and 232,000 water level measurements for 58 LTS and M sites. These data were collected from transferred sites over a period of 40 years. The database is used to capture and store historical environmental information such as analytical chemistry data, groundwater depths and elevations, well logs, well construction data, geo-referenced boundaries, site physical features, and sampling locations from LTS and M sites. Stakeholders, regulators, and project personnel can use this Web-based application and data to display information in several forms, such as a tabular report, a graph, and a geo-spatial display, or the data can be labeled or highlighted in a map view. Institutional controls, with their LTS and M requirements and documentation, have recently been incorporated into a prototype GEMS Web page for the Weldon Spring, Missouri, Site. LM uses multiple internal GIS viewers to help ensure the future protection of human health and the environment. For example, at the Rocky Flats, Colorado, Site, LM uses a GIS application to display real property interests on authoritative maps. Another project is used to facilitate discussions at stakeholder meetings for the Rocky Flats site's Original Landfill. The Uranium Leasing Program uses multiple interactive maps that assist in ongoing monitoring and the oversight of lease-holders' activities. (authors)

54 ENVIRONMENTAL SCIENCES↗

Discovery and Characterization of Non-ATP Site Inhibitors of the Mitogen Activated Protein (MAP) Kinases

Inhibition of protein kinases has validated therapeutic utility for cancer, with at least seven kinase inhibitor drugs on the market. Protein kinase inhibition also has significant potential for a variety of other diseases, including diabetes, pain, cognition, and chronic inflammatory and immunologic diseases. However, as the vast majority of current approaches to kinase inhibition target the highly conserved ATP-binding site, the use of kinase inhibitors in treating nononcology diseases may require great selectivity for the target kinase. As protein kinases are signal transducers that are involved in binding to a variety of other proteins, targeting alternative, less conserved sites on the protein may provide an avenue for greater selectivity. Here we report an affinity-based, high-throughput screening technique that allows nonbiased interrogation of small molecule libraries for binding to all exposed sites on a protein surface. This approach was used to screen both the c-Jun N-terminal protein kinase Jnk-1 (involved in insulin signaling) and p38{alpha} (involved in the formation of TNF{alpha} and other cytokines). In addition to canonical ATP-site ligands, compounds were identified that bind to novel allosteric sites. The nature, biological relevance, and mode of binding of these ligands were extensively characterized using two-dimensional {sup 1}H/{sup 13}C NMR spectroscopy, protein X-ray crystallography, surface plasmon resonance, and direct enzymatic activity and activation cascade assays. Jnk-1 and p38{alpha} both belong to the MAP kinase family, and the allosteric ligands for both targets bind similarly on a ledge of the protein surface exposed by the MAP insertion present in the CMGC family of protein kinases and distant from the active site. Medicinal chemistry studies resulted in an improved Jnk-1 ligand able to increase adiponectin secretion in human adipocytes and increase insulin-induced protein kinase PKB phosphorylation in human hepatocytes, in similar fashion to Jnk-1 siRNA and to rosiglitazone treatment. Together, the data suggest that these new ligand series bind to a novel, allosteric, and physiologically relevant site and therefore represent a unique approach to identify kinase inhibitors.

59 BASIC BIOLOGICAL SCIENCES↗

A Conterminous USA-Scale Map of Relative Tidal Marsh Elevation

Abstract Tidal wetlands provide myriad ecosystem services across local to global scales. With their uncertain vulnerability or resilience to rising sea levels, there is a need for mapping flooding drivers and vulnerability proxies for these ecosystems at a national scale. However, tidal wetlands in the conterminous USA are diverse with differing elevation gradients, and tidal amplitudes, making broad geographic comparisons difficult. To address this, a national-scale map of relative tidal elevation ( Z * MHW ), a physical metric that normalizes elevation to tidal amplitude at mean high water (MHW), was constructed for the first time at 30 × 30-m resolution spanning the conterminous USA. Contrary to two study hypotheses, watershed-level median Z * MHW and its variability generally increased from north to south as a function of tidal amplitude and relative sea-level rise. These trends were also observed in a reanalysis of ground elevation data from the Pacific Coast by Janousek et al. (Estuaries and Coasts 42 (1): 85–98, 2019). Supporting a third hypothesis, propagated uncertainty in Z * MHW increased from north to south as light detection and ranging (LiDAR) errors had an outsized effect under narrowing tidal amplitudes. The drivers of Z * MHW and its variability are difficult to determine because several potential causal variables are correlated with latitude, but future studies could investigate highest astronomical tide and diurnal high tide inequality as drivers of median Z * MHW and Z * MHW variability, respectively. Watersheds of the Gulf Coast often had propagated Z * MHW uncertainty greater than the tidal amplitude itself emphasizing the diminished practicality of applying Z * MHW as a flooding proxy to microtidal wetlands. Future studies could focus on validating and improving these physical map products and using them for synoptic modeling of tidal wetland carbon dynamics and sea-level rise vulnerability analyses.

Holmquist, James R. (ORCID:0000000325466766)↗

Planck 2013 results. XXV. Searches for cosmic strings and other topological defects

Planck data have been used to provide stringent new constraints on cosmic strings and other defects. We describe forecasts of the CMB power spectrum induced by cosmic strings, calculating these from network models and simulations using line-of-sight Boltzmann solvers. We have studied Nambu-Goto cosmic strings, as well as field theory strings for which radiative effects are important, thus spanning the range of theoretical uncertainty in the underlying strings models. We have added the angular power spectrum from strings to that for a simple adiabatic model, with the extra fraction defined as f 10 at multipole = 10. This parameter has been added to the standard six parameter fit using COSMOMC with flat priors. For the Nambu-Goto string model, we have obtained a constraint on the string tension of G μ/c 2 < 1.5 × 10 -7 and f 10 < 0.015 at 95% confidence that can be improved to G μ/c 2 < 1.3 × 10-7 and f 10 < 0.010 on inclusion of high-&ell; CMB data. For the Abelian-Higgs field theory model we find, G μ AH /c 2 < 3.2 × 10 -7 and f 10 < 0.028. The marginalised likelihoods for f 10 and in the f 10 -Ω b h 2 plane are also presented. We have additionally obtained comparable constraints on f 10 for models with semilocal strings and global textures. In terms of the effective defect energy scale these are somewhat weaker at G μ/c 2 < 1.1 × 10 -6 . We have made complementarity searches for the specific non-Gaussian signatures of cosmic strings, calibrating with all-sky Planck resolution CMB maps generated from networks of post-recombination strings. We have validated our non-Gaussian searches using these simulated maps in a Planck -realistic context, estimating sensitivities of up to Δ G μ/c 2 &approx; 4 × 10 -7 . We have obtained upper limits on the string tension at 95% confidence of G μ/c 2 < 9.0 × 10 -7 with modal bispectrum estimation and G μ/c 2 < 7.8 × 10 -7 for real space searches with Minkowski functionals. These are conservative upper bounds because only post-recombination string contributions have been included in the non-Gaussian analysis.

79 ASTRONOMY AND ASTROPHYSICS↗

SPT-3G D1: Maps of the millimeter-wave sky from 2019 and 2020 observations of the SPT-3G Main field

Maps of the sky in millimeter wavelengths contain rich information on cosmology through anisotropies of the cosmic microwave background (CMB). Creating multifrequency sky maps of anisotropies in the $I$, $Q$, and $U$ Stokes parameters is one of the first steps of CMB cosmology analyses. In this work, we describe the production and validation of a set of sky maps from the South Pole Telescope's third-generation camera, SPT-3G. The maps are from data taken in frequency bands centered at 95, 150, and 220 GHz and taken during the first two years, 2019 and 2020, of the SPT-3G Main survey, which covers $4\%$ of the sky. We applied high-pass filters to time series of individual detectors and binned the filtered time series samples into map pixels. After that, we calibrated and cleaned the maps to reduce known systematic errors. In addition, we searched for other systematic errors through null tests and mitigated a significant systematic error detected therein. The white noise levels of the full-depth maps of the $I$ Stokes parameter are $5.4$, $4.4$, and $16.2$$\mathrm{μK}$-$\mathrm{arcmin}$ in the 95, 150, and 220 GHz bands, respectively, and $8.4$, $6.6$, and $25.8$$\mathrm{μK}$-$\mathrm{arcmin}$ for $Q/U$. These maps are the deepest to date used for measurements of mid-to-high-$\ell$ primary temperature and $E$-mode polarization CMB anisotropies, and reconstructions of the CMB gravitational lensing potential. We make these maps and supporting data products publicly accessible.

Quan, W. [Argonne (main); Chicago U., EFI; Chicago↗

Probing inhomogeneous composition in core/shell nanowires by Raman spectroscopy

Due to its non-destructive and its micro-spatial resolution, Raman spectroscopy is a powerful tool for a rapid structural and compositional characterization of nanoscale materials. Here, by combining the compositional dependence of the Raman peaks with the existence of photonic modes in the nanowires, we address the composition inhomogeneities of Al{sub x}Ga{sub 1−x}As/GaAs core/shell structures. The experimental results are validated with complementary chemical composition maps of the nanowire cross-sections and finite-difference time-domain simulations of the photonic modes.

36 MATERIALS SCIENCE↗

Design and optimization of arrays of neodymium iron boron-based magnets for magnetic tweezers applications

We present the design methodology for arrays of neodymium iron boron (NdFeB)-based magnets for use in magnetic tweezers devices. Using finite element analysis (FEA), we optimized the geometry of the NdFeB magnet as well as the geometry of iron yokes designed to focus the magnetic fields toward the sample plane. Together, the magnets and yokes form a magnetic array which is the basis of the magnetic tweezers device. By systematically varying 15 distinct shape parameters, we determined those features that maximize the magnitude of the magnetic field gradient as well as the length scale over which the magnetic force operates. Additionally, we demonstrated that magnetic saturation of the yoke material leads to intrinsic limitations in any geometric design. Using this approach, we generated a compact and light-weight magnetic tweezers device that produces a high field gradient at the image plane in order to apply large forces to magnetic beads. We then fabricated the optimized yoke and validated the FEA by experimentally mapping the magnetic field of the device. The optimization data and iterative FEA approach outlined here will enable the streamlined design and construction of specialized instrumentation for force-sensitive microscopy.

46 INSTRUMENTATION RELATED TO NUCLEAR SCIENCE AND ↗

Persistent Microvascular Obstruction After Myocardial Infarction Culminates in the Confluence of Ferric Iron Oxide Crystals, Proinflammatory Burden, and Adverse RemodelingCLINICAL PERSPECTIVE

Emerging evidence now supports the notion that persistent microvascular obstruction (PMO) may be more predictive of major adverse cardiovascular events than MI size itself. But, how PMO, a phenomenon limited to the acute/sub-acute period of MI, imparts adverse remodeling throughout the post MI period, particularly after its resolution, is incompletely understood. We hypothesized that PMOs resolve into chronic iron crystals within MI territories and actively impart a proinflammatory burden and adverse remodeling of infarction and LV in the chronic phase of MI. Canine models reperfused (n=20) and non-reperfused (n=20) with and without PMO were studied with serial cardiac MRI to characterize the spatiotemporal relationships between PMO, iron deposition, and infarct and LV remodeling indices between acute (day 7, post MI) and chronic (week 8, post MI). Histopathology and immunohistochemistry were used to validate the iron deposition, microscopically map and quantify the relationship between iron-rich chronic MI regions against pro-inflammatory macrophages, proinflammatory cytokines and matrix metalloproteinase. Atomic resolution transmission electron microscopy (TEM) was used to determine the crystallinity of iron and assess the physical effects of iron on lysosomes within macrophages, and energy-dispersive X-ray spectroscopy (EDS) to identify the chemical composition of the iron composite. Results showed that PMOs lead to iron deposition within chronic MI and that the extent of chronic iron deposition is strongly related to PMO Volume (r>0.6, p<0.001). TEM and EDS analysis showed that iron within chronic MI is found within macrophages as aggregates of nanocrystals of ~2.5 nm diameter in ferric state. Correlative histological studies showed that iron content, proinflammatory burden and collagen degrading enzyme were highly correlated (r >0.7, p<0.001). Iron within chronic MI was significantly associated with infarct resorption (r>0.5, p<0.001) and adverse structural (r>0.5, p<0.001) remodeling. Territories of PMO in the acute phase of MI resolve into iron oxide nanocrystals in ferric state in the chronic phase of MI. The amount of iron deposition is determined by the extent of persistent microvascular obstruction and is directly related to the extent of pro-inflammatory burden, infarct thinning and adverse LV remodeling. Resolution of PMO into iron deposition could be a potential contributing source to the adverse remodeling of the heart in the chronic phase of MI.

60 APPLIED LIFE SCIENCES↗

Constructing rigorous and broad biosurveillance networks for detecting emerging zoonotic outbreaks

Determining optimal surveillance networks for an emerging pathogen is difficult since it is not known beforehand what the characteristics of a pathogen will be or where it will emerge. The resources for surveillance of infectious diseases in animals and wildlife are often limited and mathematical modeling can play a supporting role in examining a wide range of scenarios of pathogen spread. We demonstrate how a hierarchy of mathematical and statistical tools can be used in surveillance planning help guide successful surveillance and mitigation policies for a wide range of zoonotic pathogens. The model forecasts can help clarify the complexities of potential scenarios, and optimize biosurveillance programs for rapidly detecting infectious diseases. Using the highly pathogenic zoonotic H5N1 avian influenza 2006-2007 epidemic in Nigeria as an example, we determined the risk for infection for localized areas in an outbreak and designed biosurveillance stations that are effective for different pathogen strains and a range of possible outbreak locations. We created a general multi-scale, multi-host stochastic SEIR epidemiological network model, with both short and long-range movement, to simulate the spread of an infectious disease through Nigerian human, poultry, backyard duck, and wild bird populations. We chose parameter ranges specific to avian influenza (but not to a particular strain) and used a Latin hypercube sample experimental design to investigate epidemic predictions in a thousand simulations. We ranked the risk of local regions by the number of times they became infected in the ensemble of simulations. These spatial statistics were then complied into a potential risk map of infection. Finally, we validated the results with a known outbreak, using spatial analysis of all the simulation runs to show the progression matched closely with the observed location of the farms infected in the 2006-2007 epidemic.

59 BASIC BIOLOGICAL SCIENCES↗

Hawai‘i Distributed Energy Resource Technologies for Energy Security

HNEI has conducted research to address a number of issues important to move Hawai‘i to greater use of intermittent renewable and distributed energy resource (DER) technologies in order to facilitate greater use of Hawai‘i's indigenous renewable energy resources. Efforts have been concentrated on the Islands of Hawai‘i, Maui, and O‘ahu, focusing in three areas of endeavor: 1) Energy Modeling and Scenario Analysis (previously called Energy Road mapping); 2) Research, Development, and Validation of Renewable DER and Microgrid Technologies; and 3) Analysis and Policy. These efforts focused on analysis of the island energy systems and development of specific candidate technologies for future insertion into an integrated energy system, which would lead to a more robust transmission and distribution system in the state of Hawai‘i and eventually elsewhere in the nation.

32 ENERGY CONSERVATION, CONSUMPTION, AND UTILIZATI↗

Smart Meter Data: A Gateway for Reducing Solar Soft Costs with Model-Free Hosting Capacity Maps

Public-facing solar hosting capacity (HC) maps, which show the maximum amount of solar energy that can be installed at a location without adverse effects, have proven to be a key driver of solar soft cost reductions through a variety of pathways (e.g., streamlining interconnection, siting, and customer acquisition processes). However, current methods for generating HC maps require detailed grid models and time-consuming simulations that limit both their accuracy and scalability—today, only a handful out of almost 2,000 utilities provide these maps. This project developed and validated data-driven algorithms for calculating solar HC using data from AMI without the need of detailed grid models or simulations. The algorithms were validated on utility datasets and incorporated as an application into NRECA’s Open Modeling Framework (OMF.coop) for the over 260 coops and vendors throughout the US to use. The OMF is free and open-source for everyone.

14 SOLAR ENERGY↗