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At least 127 records · Page 7

Volumetric Data Exploration with Machine Learning-Aided Visualization in Neutron Science

Recent advancements in neutron and X-ray sources, instrumentation and data collection modes have significantly increased the experimental data size (which could easily contain 108–1010 data points), so that conventional volumetric visualization approaches become inefficient for both still imaging and interactive OpenGL rendition in a 3D setting. We introduce a new approach based on the unsupervised machine learning algorithm, Density-Based Spatial Clustering of Applications with Noise (DBSCAN), to efficiently analyze and visualize large volumetric datasets. Here we present two examples of analyzing and visualizing datasets from the diffuse scattering experiment of a single crystal sample and the tomographic reconstruction of a neutron scanning of a turbine blade. We found that by using the intensity as the weighting factor in the clustering process, DBSCAN becomes very effective in de-noising and feature/boundary detection, and thus enables better visualization of the hierarchical internal structures of the neutron scattering data.

Hui, Yawei↗

Spread spectrum time domain reflectometry (SSTDR) and frequency domain reflectometry (FDR) cable inspection using machine learning

Cables are initially qualified for nuclear power plant use for 40 years. As plants extend their operating license to 60 and 80 years, justification for continued cable use must shift to a condition-based approach since it is cost prohibitive to completely replace cables that are likely still capable of performing their design function. The Pacific Northwest National Laboratory (PNNL) Accelerated and Real Time Experimental Nodal Analysis (ARENA) cable motor test bed was used to test the response of a commercial spread spectrum time domain reflectometry (SSTDR) system, a laboratory instrument software-controlled SSTDR, and a vector network analyzer-based frequency domain reflectometry (FDR) system to various cable anomalies. The three instrument systems were able to interrogate cables over a range of frequency bandwidths that can be helpful for human data analysis. Data were subjected to supervised and unsupervised machine learning (ML) analyses to distinguish normal undamaged cable responses from anomalous cable responses. Both supervised and unsupervised ML approaches produced encouraging results with an undamaged/anomalous prediction accuracy from 0.69% to 0.87%. Recommendations for further development and field implementation include increased and more balanced sample sets particularly including more training data.

SSTDR, FDR, Reflectometry, Machine Learning, ARENA↗

ACAT

A Physics-Informed Machine Learning (PIML) framework for better system vulnerability assessment and faster corrective action recommendation. This framework consists of deriving physics-informed priors and smart sampling algorithms to help reduce the data samples of grid models and the dimension of simulation outputs, yielding small yet representative subset of the complex system, and both supervised and unsupervised machine learning (ML) algorithms for designing corrective actions

Chen, Yousu↗

Comparison of Supervised and Un-Supervised Machine Learning Algorithms for Threat Detection and Scintillator Performance for Radiation Portal Monitoring

Following the events of September 11, 2001, international border crossing have been equipped with radiation portal monitors (RPMs) to identify illicit radioactive material. Polyvinyl toluene (PVT) scintillators are commonly used due to their low cost and reasonable maintainability, however they offer low spectral resolution. Despite the fact that over twenty years has transpired since this event, radioisotopes are still typically identified by hand-crafted classification algorithms, e.g., total counts or energy windowing, and exhibit relatively poor performance in detecting threats at the low false alarm rates required to support the stream of commerce. While some improvement to performance has been realized via the use of supervised machine learning, these classification algorithms typically utilize simulations in lieu of real data due to the sparsity of data for one or more classes. Accordingly, the performance of these algorithms is somewhat less than optimal when examining experiments or simulations with model mismatch. Consequently, in this work, we examine the application of a number of unsupervised machine learning, anomaly detection based algorithms, to circumvent the inverse crime when analyzing spectroscopy data for RPMs. We also compare anomaly detection results with those obtained via the use of supervised classification detection ML algorithms when model mismatch is introduced between the simulated threat items utilized for training/testing. Finally, we compared the performance of the PVT scintillators to those obtained with higher resolution detectors using both anomaly detection and supervised classification algorithms.

98 NUCLEAR DISARMAMENT, SAFEGUARDS, AND PHYSICAL P↗

Machine Learning-Based Anomaly Detection for PMT Data Quality Monitoring in the SBN and DUNE

Maintaining high-quality detector data is essential for achieving the scientific objectives of the Short-Baseline Neutrino (SBN) Program at Fermilab. Current data quality monitoring (DQM) procedures rely primarily on threshold-based metrics and manual inspection of detector monitoring plots, making the detection of subtle or gradually developing anomalies both time-consuming and dependent on expert interpretation. This project developed and evaluated a machine-learning workflow for automatically identifying anomalous photomultiplier tube (PMT) channels in the Short-Baseline Near Detector (SBND) using optical-hit amplitude data. A Python-based analysis program was developed to process ROOT files, extract statistical features describing individual PMT amplitude distributions, and generate feature vectors for anomaly detection. These features were used to train an Isolation Forest model using data representing normal detector operation. The trained model was subsequently applied to independent detector runs to identify channels exhibiting statistically unusual behavior relative to the learned reference response. To support expert interpretation, the workflow generated complementary diagnostic products, including anomaly score distributions, normalized amplitude comparisons, decision-tree visualizations, and principal component analysis (PCA) projections. This project demonstrated the feasibility of integrating unsupervised machine learning into detector data-quality monitoring and developed a complete workflow for automated PMT performance assessment to aid expert-driven review. Beyond its technical contributions, the VFP appointment fostered a research collaboration between Aurora University and Fermilab and provided direct workforce development benefits by training the visiting faculty member in detector-scale machine-learning methods that are now being incorporated into undergraduate coursework and research. The methodology developed here provides a foundation for future applications to ProtoDUNE and other liquid argon time projection chamber (LArTPC) detectors, contributing to ongoing efforts to improve detector reliability, reduce manual monitoring requirements, and enable scalable data quality monitoring for future large-scale neutrino experiments, including the Deep Underground Neutrino Experiment (DUNE).

Colón Santana, Juan A. [Unlisted, US, IL]↗

The Deeper, Wider, Faster programme: exploring stellar flare activity with deep, fast cadenced DECam imaging via machine learning

ABSTRACT We present our 500 pc distance-limited study of stellar flares using the Dark Energy Camera as part of the Deeper, Wider, Faster programme. The data were collected via continuous 20-s cadence g-band imaging and we identify 19 914 sources with precise distances from Gaia DR2 within 12, ∼3 deg2, fields over a range of Galactic latitudes. An average of ∼74 min is spent on each field per visit. All light curves were accessed through a novel unsupervised machine learning techniques designed for anomaly detection. We identify 96 flare events occurring across 80 stars, the majority of which are M dwarfs. Integrated flare energies range from ∼1031–1037 erg, with a proportional relationship existing between increased flare energy with increased distance from the Galactic plane, representative of stellar age leading to declining yet more energetic flare events. In agreement with previous studies we observe an increase in flaring fraction from M0 to M6 spectral types. Furthermore, we find a decrease in the flaring fraction of stars as vertical distance from the galactic plane is increased, with a steep decline present around ∼100 pc. We find that $\sim 70{{\ \rm per\ cent}}$ of identified flares occur on short time-scales of <8 min. Finally, we present our associated flare rates, finding a volumetric rate of 2.9 ± 0.3 × 10−6 flares pc−3 h−1.

Webb, S.↗

Anomaly detection search for new resonances decaying into a Higgs boson and a generic new particle $X$ in hadronic final states using $\sqrt{s}$ = 13 TeV $pp$ collisions with the ATLAS detector

A search is presented for a heavy resonance $Y$ decaying into a Standard Model Higgs boson $H$ and a new particle $X$ in a fully hadronic final state. The full Large Hadron Collider run 2 dataset of proton-proton collisions at $\sqrt{s}$ = 13 TeV collected by the ATLAS detector from 2015 to 2018 is used and corresponds to an integrated luminosity of 139 fb –1 . The search targets the high $Y$-mass region, where the $H$ and $X$ have a significant Lorentz boost in the laboratory frame. A novel application of anomaly detection is used to define a general signal region, where events are selected solely because of their incompatibility with a learned background-only model. It is constructed using a jet-level tagger for signal-model-independent selection of the boosted $X$ particle, representing the first application of fully unsupervised machine learning to an ATLAS analysis. Two additional signal regions are implemented to target a benchmark $X$ decay into two quarks, covering topologies where the $X$ is reconstructed as either a single large-radius jet or two smallradius jets. The analysis selects Higgs boson decays into $b$$\overline{b}$, and a dedicated neural-network-based tagger provides sensitivity to the boosted heavy-flavor topology. No significant excess of data over the expected background is observed, and the results are presented as upper limits on the production cross section $σ$ ($pp$ → $Y$ → $XH$ → $q$$\overline{q}$$b$$\overline{b}$) for signals with $m_Y$ between 1.5 and 6 TeV and $m_X$ between 65 and 3000 GeV

72 PHYSICS OF ELEMENTARY PARTICLES AND FIELDS↗

Nonnegative tensor factorization for contaminant source identification

Unsupervised Machine Learning (ML) is becoming increasingly popular for solving various types of data analytics problems including feature extraction, blind source separation, exploratory analyses, model diagnostics, etc. In this work, we have developed a new unsupervised ML method based on Nonnegative Tensor Factorization (NTF) for identification of the original groundwater types (including contaminant sources) present in geochemical mixtures observed in an aquifer. Frequently, groundwater types with different geochemical signatures are related to different background and/or contamination sources. The characterization of groundwater mixing processes is a challenging but very important task critical for any environmental management project aiming to characterize the fate and transport of contaminants in the subsurface and perform contaminant remediation. This task typically requires solving complex inverse models representing groundwater flow and geochemical transport in the aquifer, where the inverse analysis accounts for available site data. Usually, the model is calibrated against the available data characterizing the spatial and temporal distribution of the observed geochemical types. Numerous different geochemical constituents and processes may need to be simulated in these models which further complicates the analyses. Additionally, the application of inverse methods may introduce biases in the analyses through the assumptions made in the model development process. Here, we substitute the model inversion with unsupervised ML analysis. The ML analysis does not make any assumptions about underlying physical and geochemical processes occurring in the aquifer. Our ML methodology, called NTFk, is capable of identifying (1) the unknown number of groundwater types (contaminant sources) present in the aquifer, (2) the original geochemical concentrations (signatures) of these groundwater types and (3) spatial and temporal dynamics in the mixing of these groundwater types. These results are obtained only from the measured geochemical data without any additional site information. In general, the NTFk methodology allows for interpretation of large high-dimensional datasets representing diverse spatial and temporal components such as state variables and velocities. NTFk has been tested on synthetic and real-world site three-dimensional datasets. Finally, the NTFk algorithm is designed to work with geochemical data represented in the form of concentrations, ratios (of two constituents; for example, isotope ratios), and delta notations (standard normalized stable isotope ratios).

58 GEOSCIENCES↗

Nowcasting Earthquakes: Imaging the Earthquake Cycle in California With Machine Learning

We propose a new machine learning-based method for nowcasting earthquakes to image the time-dependent earthquake cycle. The result is a timeseries that may correspond to the process of stress accumulation and release. The timeseries are constructed by using principal component analysis of regional seismicity. The patterns are found as eigenvectors of the cross-correlation matrix of a collection of seismicity timeseries in a coarse grained regional spatial grid (pattern recognition via unsupervised machine learning). The eigenvalues of this matrix represent the relative importance of the various eigenpatterns. Using the eigenvectors and eigenvalues, we compute the weighted correlation timeseries of the regional seismicity. This timeseries has the property that the weighted correlation generally decreases prior to major earthquakes in the region, and increases suddenly just after a major earthquake occurs. As in a previous paper, we find that this method produces a nowcasting timeseries that resembles the hypothesized regional stress accumulation and release process characterizing the earthquake cycle. We then address the problem of whether the timeseries contain information regarding future large earthquakes. For this, we compute a receiver operating characteristic and determine the decision thresholds for several future time periods of interest (optimization via supervised machine learning). We find that signals can be detected that can be used to characterize the information content of the timeseries. These signals may be useful in assessing present and near-future seismic hazards.

58 GEOSCIENCES↗

Automatic point Cloud Building Envelope Segmentation (Auto-CuBES) using Machine Learning

Modern retrofit construction practices use 3D point cloud data of the building envelope to obtain the as-built dimensions. However, manual segmentation by a trained professional is required to identify and measure window openings, door openings, and other architectural features, making the use of 3D point clouds labor-intensive. In this study, the Automatic point Cloud Building Envelope Segmentation (Auto-CuBES) algorithm is described, which can significantly reduce the time spent during point cloud segmentation. The Auto-CuBES algorithm inputs a 3D point cloud generated by commonly available surveying equipment and outputs a wire-frame model of the building envelope. Unsupervised machine learning methods were used to identify facades, windows, and doors while minimizing the number of calibration parameters. Additionally, Auto-CuBES generates a heat map of each facade indicating non-planar characteristics that are crucial for the optimization of connections used in overclad envelope retrofits. With a scan resolution of 3 mm, the resulting window dimensions showed a mean absolute error of 4.2 mm compared to manual laser measurements.

Maldonado Puente, Bryan↗

Genarris 2.0: A Random Structure Generator for Molecular Crystals

Genarris is an open source Python package for generating random molecular crystal structures with physical constraints for seeding crystal structure prediction algorithms and training machine learning models. Here we present a new version of the code, containing several major improvements. A MPI-based parallelization scheme has been implemented, which facilitates the seamless sequential execution of user-defined workflows. A new method for estimating the unit cell volume based on the single molecule structure has been developed using a machine-learned model trained on experimental structures. A new algorithm has been implemented for generating crystal structures with molecules occupying special Wyckoff positions. A new hierarchical structure check procedure has been developed to detect unphysical close contacts efficiently and accurately. New intermolecular distance settings have been implemented for strong hydrogen bonds. To demonstrate these new features, we study two specific cases: benzene and glycine. Genarris finds the experimental structures of the two polymorphs of benzene and the three polymorphs of glycine. Program summary Program Title: Genarris 2.0 Program Files doi: http://dx.doi.org/10.17632/grx6mz4pjn.1 Licensing provisions: BSD-3 Clause Programming language: Python, C External routines/libraries: Spglib, ASE, pymatgen, SciPy, mpi4py, scikit-learn, PyTorch, FHI-aims. Nature of problem: Molecular crystal structure prediction. Solution method: Genarris 2.0 generates molecular crystal structures over the 230 space groups, on general and special Wyckoff positions, using physical constraints. Down-sampling of the generated structures may be performed subsequently, based on molecular crystal packing descriptors and an unsupervised machine learning algorithm. Lastly, ab initio structure relaxation may be performed for the final pool. Depending on the user-defined workflow implemented, Genarris may be used to generate diverse molecular crystal datasets to seed evolutionary algorithms or to train machine learning algorithms or as a standalone crystal structure prediction method. Restrictions: For crystal structure generation, the molecule of interest must be semi-rigid with no bond rotational degrees of freedom. Unusual features: Genarris 2.0 is a highly distributed program, making use of MPI for Python parallelization. The user has the ability to design and implement workflows by executing a user-defined list of procedures. Genarris 2.0 offers new features including a machine learning model for estimating the molecular volume in the solid state from the single molecule structure, structure generation in special Wyckoff positions of space groups, hierarchical structure checks including rigorous treatment of non-orthogonal structures, and clustering and down-selection workflows combining first principles simulations with machine learning. (C) 2020 Elsevier B.V. All rights reserved.

Crystal structure prediction↗

Confidentiality-preserving machine learning algorithms for soft-failure detection in optical communication networks

Automated fault management is at the forefront of next-generation optical communication networks. The increase in complexity of modern networks has triggered the need for programmable and software-driven architectures to support the operation of agile and self-managed systems. In these scenarios, the European Telecommunications Standards Institute zero-touch network and service management approach is imperative. The need for machine learning algorithms to process the large volume of telemetry data brings safety concerns as distributed cloud-computing solutions become the preferred approach for deploying reliable communication network automation. This paper’s contribution is twofold. First, we propose a simple yet effective method to guarantee the confidentiality of the telemetry data based on feature scrambling. The method allows the operation of third-party computational services without direct access to the full content of the collected data. Additionally, the effectiveness of four unsupervised machine learning algorithms for soft-failure detection is evaluated when applied to the scrambled telemetry data. The methods are based on factor analysis, principal component analysis, nonlinear principal component analysis, and singular value decomposition. Most dimensionality reduction algorithms have the common property that they can maintain similar levels of fault classification performance while hiding the data structure from unauthorized access. Evaluations of the proposed algorithms demonstrate this capability.

97 MATHEMATICS AND COMPUTING↗

Leading-Order Analysis by Artificial Intelligence [Slides]

The following topics are addressed in this seminar presentation: The author's background; What is leading-order analysis?; What are supervised and unsupervised machine learning and what is artificial intelligence?; The definition of AI; and, Conclusions and outlook.

42 ENGINEERING↗

Scaling Building Energy Audits through Machine Learning Methods on Novel Drone Image Data

Building energy audits are time-consuming and labor-intensive. This paper describes a new method using machine learning (ML) techniques on novel data sources (drone images) to improve the identification of building characteristics and retrofit opportunities, and thereby reduce the effort for audits. The new ML method includes: (1) Building footprint extraction using line extraction, polygonization, and polygon-merging, (2) Building envelope extraction using PIX4d modeling software to reconstruct a building 3D model, (3) Visualization tool for viewing images from the 3D model, (4) Window-to-wall ratio (WWR) using state-of-art deep neural network semantic segmentation, (5) Envelope thermal anomaly detection using an unsupervised machine learning clustering algorithm, and (6) Rooftop energy equipment detection based on an object detection algorithm. The testing of this method involved a comparison of additional ML-generated information overlaid on current ‘state-of-practice’ audit and remote assessment baselines using evaluation metrics: labor time and associated cost, marginal benefits of using ML-generated information in workflows for audits and remote assessments, integration potential with existing processes and tools, and replicability/scalability of the method. In two test buildings in California that had comprehensive drawings and meter data available, the ML method effectively generated a building footprint, envelope, rooftop equipment, WWR, and locations of envelope thermal anomalies. Projected target segments of the ML method are sites with minimal drawings and energy data, and underserved sectors such as multistoried housing, disadvantaged communities, and schools for which the ML method can enable identification of building asset characteristics and prioritization of envelope retrofits and decentralized energy equipment retrofits.

Singh, Reshma↗

Machine Learning of All Mycobacterium tuberculosis H37Rv RNA-seq Data Reveals a Structured Interplay between Metabolism, Stress Response, and Infection

Mycobacterium tuberculosis is one of the most consequential human bacterial pathogens, posing a serious challenge to 21st century medicine. A key feature of its pathogenicity is its ability to adapt its transcriptional response to environmental stresses through its transcriptional regulatory network (TRN). While many studies have sought to characterize specific portions of the M. tuberculosis TRN, and some studies have performed system-level analysis, few have been able to provide a network-based model of the TRN that also provides the relative shifts in transcriptional regulator activity triggered by changing environments. Here, we compiled a compendium of nearly 650 publicly available, high quality M. tuberculosis RNA-sequencing data sets and applied an unsupervised machine learning method to obtain a quantitative, top-down TRN. It consists of 80 independently modulated gene sets known as “iModulons,” 41 of which correspond to known regulons. These iModulons explain 61% of the variance in the organism’s transcriptional response. We show that iModulons (i) reveal the function of poorly characterized regulons, (ii) describe the transcriptional shifts that occur during environmental changes such as shifting carbon sources, oxidative stress, and infection events, and (iii) identify intrinsic clusters of regulons that link several important metabolic systems, including lipid, cholesterol, and sulfur metabolism. This transcriptome-wide analysis of the M. tuberculosis TRN informs future research on effective ways to study and manipulate its transcriptional regulation and presents a knowledge-enhanced database of all published high-quality RNA-seq data for this organism to date.

59 BASIC BIOLOGICAL SCIENCES↗

Clustering earthquake signals and background noises in continuous seismic data with unsupervised deep learning

The continuously growing amount of seismic data collected worldwide is outpacing our abilities for analysis, since to date, such datasets have been analyzed in a human-expert intensive, supervised fashion. Moreover, analyses that are conducted can be strongly biased by the standard models employed by seismologists. In response to both of these challenges, we develop a new unsupervised machine learning framework for detecting and clustering seismic signals in continuous seismic records. Our approach combines a deep scattering network and a Gaussian mixture model to cluster seismic signal segments and detect novel structures. To illustrate the power of the framework, we analyze seismic data acquired during the June 2017 Nuugaatsiaq, Greenland landslide. We demonstrate the blind detection and recovery of the repeating precursory seismicity that was recorded before the main landslide rupture, which suggests that our approach could lead to more informative forecasting of the seismic activity in seismogenic areas.

59 BASIC BIOLOGICAL SCIENCES↗

Distinguishing isotropic and anisotropic signals for X-ray total scattering using machine learning

Understanding structure–property relationships is essential for advancing technologies based on thin films. X-ray pair distribution function (PDF) analysis can access relevant atomic structure details spanning local-, mid- and long-range structure. While X-ray PDF has been adapted for thin films on amorphous substrates, measurements on single-crystal substrates are necessary to accurately determine structure origins for some thin film materials, especially those for which the substrate changes the accessible structure and properties. However, when measuring films on single-crystal substrates, high-intensity anisotropic Bragg spots saturate 2D detector images, overshadowing the thin films' isotropic scattering signal. This renders previous data processing methods for films on amorphous substrates unsuitable for films on single-crystal substrates. To address this measurement need, we developed IsoDAT2D, an innovative data processing approach using unsupervised machine learning algorithms. The program combines dimensionality reduction and clustering algorithms to separate thin film and single-crystal substrate X-ray scattering signals. We use SimDAT2D , a program we developed to generate simulated thin film data, to validate IsoDAT2D . Here we also use IsoDAT2D to isolate X-ray total scattering signal from a thin film on a single-crystal substrate. The resulting PDF data are compared with similar data processed using previous methods, especially substrate subtraction for single-crystal and amorphous substrates. PDF data from IsoDAT2D -identified X-ray total scattering data are significantly better than from single-crystal substrate subtraction, but not as reliable as PDF data from amorphous substrate subtraction. With IsoDAT2D , there are new opportunities to expand PDF to a wider variety of thin films, including those on single-crystal substrates, with which new structure–property relationships can be elucidated to enable fundamental understanding and technological advances.

36 MATERIALS SCIENCE↗