Structural basis for recognition of diverse transcriptional repressors by the TOPLESS family of corepressors
Groucho-related corepressors in plants bind a peptide motif found in numerous repressors through a novel peptide recognition fold.
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Groucho-related corepressors in plants bind a peptide motif found in numerous repressors through a novel peptide recognition fold.
Li-ion battery performance and degradation are strongly correlated with the electrode microstructures and can be modeled at different scales, each with their own limitations. Herein, we compare predictions achieved with a macro- and a micro-scale model, that is, respectively, neglecting or considering the microstructural heterogeneity of the composite electrodes, on virtual numerically generated and real microstructures. While both models are in relative agreement at the low charge rates, differences arise for fast charging scenarios and especially for the real, highly heterogenous, microstructures. The microscale model predicts that electrolyte concentration saturation and depletion, respectively, at the back of the cathode and of the anode are exacerbated, and that lithium plating occurs earlier for real microstructures. The present work also indicates that the mesh representation significantly impacts the microscale model predictions, and consequently that microscale models should add surface area as a parameter to consider explicitly surface roughness. This article is the first of a series, with subsequent entries further investigating in-plane heterogeneities, lithium plating, and the impact of microstructure representativity on model predictions.
A statistical analysis was recently presented at a DOE review in reference to a particular problem. Here we attempt to capture the essence of this problem with a simple “toy” analog and demonstrate the incorrectness of the presented J figure of merit algorithm. We show that the incorrect usage of J gives PDFs that have erroneous long tails and significantly overestimate the rms deviations relative to those obtained by exact analytic methods. Conversely, a numerical Bayesian analysis gives the correct result.
This report documents a numerical modeling study conducted to assess the pressure environment and relative biological performance of the existing turbine runner design at the U.S. Army Corps of Engineers (USACE) McNary Dam to establish a baseline for comparison to planned replacement runner designs. Computational fluid dynamics (CFD) models of the turbine unit constructed for this study were analyzed using a streamtrace-based technique called the Biological Performance Assessment (BioPA), which was developed at the Pacific Northwest National Laboratory (PNNL).
Accurate materials’ equations of state (EOS) are essential for understanding materials properties as well as for use in multiphysics simulations. In particular, hydrodynamics simulations are based on three fundamental conservation laws (mass, momentum and energy) that form an under-determined system of equations. The equation of state serves as an additional closure relation between thermodynamic variables for a given material that enables numerical hydrodynamics simulation. In this report, we focus on the development of an ab initio EOS for the body centered cubic (BCC) phase of Vanadium (V) for eventual integration into a multiphase EOS in the OpenSesame EOS database.
Over the course of the last two decades, traditional models of planet formation have been repeatedly challenged by the emerging census of extrasolar planets. Key among them is the orbital architecture problem: while standard models of orbital migration predict resonant orbits for short-period objects, most planets do not appear to lie in orbital resonances. Here, we show that the four-planet system Kepler-221, not previously recognized to have active orbital resonances, has a three-body commensurability relation unique within the Kepler sample. Using a suite of numerical experiments as well as a perturbative analysis, we demonstrate that this system likely began as a resonant chain and proceeded to undergo large-scale divergence away from resonance, under the action of tidal dissipation. Our results further indicate that obliquity tides, driven by a secular spin–orbit resonance and mutual inclination, are an excellent candidate for driving this orbital divergence, and that the high tidal luminosity may also explain the anomalous size of planet b, which lies within the Fulton radius gap.
We perform the first systematic study of how dynamical stellar tides and general relativistic (GR) effects affect the dynamics and outcomes of binary-single interactions. For this, we have constructed an N -body code that includes tides in the affine approximation, where stars are modeled as self-similar ellipsoidal polytropes, and GR corrections using the commonly used post-Newtonian formalism. Using this numerical formalism, we are able resolve the leading effect from tides and GR across several orders of magnitude in both stellar radius and initial target binary separation. We find that the main effect from tides is the formation of two-body tidal captures that form during the chaotic and resonant evolution of the triple system. The two stars undergoing the capture spiral in and merge. The inclusion of tides can thus lead to an increase in the stellar coalescence rate. We also develop an analytical framework for calculating the cross section of tidal inspirals between any pair of objects with similar mass. From our analytical and numerical estimates, we find that the rate of tidal inspirals relative to collisions increases as the initial semimajor axis of the target binary increases and the radius of the interacting tidal objects decreases. The largest effect is therefore found for triple systems hosting white dwarfs and neutron stars (NSs). In this case, we find the rate of highly eccentric white dwarf—NS mergers to likely be dominated by tidal inspirals. While tidal inspirals occur rarely, we note that they can give rise to a plethora of thermonuclear transients, such as Ca-rich transients.
How galaxies form from, and are fueled by, gas from the intergalactic medium (IGM) remains one of the major unsolved problems in galaxy formation. While the classical Cold Dark Matter paradigm posits galaxies forming from cooling virialized gas, recent theory and numerical simulations have highlighted the importance of cold accretion flows—relatively cool ( T ∼ few × 104 K) unshocked gas streaming along filaments into dark matter halos, including hot, massive, high-redshift halos. These flows are thought to deposit gas and angular momentum into the circumgalactic medium resulting in disk- or ring-like structures, eventually coalescing into galaxies forming at filamentary intersections. We earlier reported a bright, Ly α emitting filament near the QSO HS1549+19 at redshift z = 2.843 discovered with the Palomar Cosmic Web Imager. We now report that the bright part of this filament is an enormous ( R > 100 kpc) rotating structure of hydrogen gas with a disk-like velocity profile consistent with a 4 × 10{sup 12} M {sub ⊙} halo. The orbital time of the outer part of the what we term a “protodisk” is comparable to the virialization time and the age of the universe at this redshift. We propose that this protodisk can only have recently formed from cold gas flowing directly from the cosmic web.
Numerical codes were developed to calculate the two dimensional flow field which results when supersonic flow encounters double wedge configurations whose angles are such that a type 4 pattern occurs. The flow field model included the shock interaction phenomena for a delta wing orbiter. Two numerical codes were developed, one which used the perfect gas relations and a second which incorporated a Mollier table to define equilibrium air properties. The two codes were used to generate theoretical surface pressure and heat transfer distributions for velocities from 3,821 feet per second to an entry condition of 25,000 feet per second.
Difficulties related to the application of the finite element method for numerical solution of the Navier-Stokes equation are discussed. The unsteady flow around a stationary and oscillating NACA 0012 airfoil was analyzed. In an effort to establish the range of applicability of the developed numerical method, the accuracy and stability problems in representing unsteady flow patterns and determining pressure distribution around the airfoil were investigated. Error involved in determining the velocity field and in the numerical integration of the discretized equations were analyzed in terms of geometry of the finite element gridwork, boundary conditions for stationary and oscillating airfoils, angles of attack and flow conditions.
A comparison with NASA conducted simulator studies has shown that the approximate digital method for computing rotor blade flapping responses to random inputs, tentatively suggested in Phase I Report, gives with increasing rotor advance ratio the wrong trend. Consequently, three alternative methods of solution have been considered and are described: (1) an approximate method based on the functional relation between input and output double frequency spectra, (2) a numerical method based on the system responses to deterministic inputs and (3) a perturbation approach. Among these the perturbation method requires the least amount of computation and has been developed in two forms - the first form to obtain the response correlation function and the second for the time averaged spectra of flapping oscillations.
An analysis is presented for the relaxation of a turbulent boundary layer on a semi-infinite flat plate after passage of a shock wave and a trailing driver gas-driven gas interface. The problem has special application to expansion-tube flows. The flow-governing equations have been transformed into the Crocco variables, and a time-similar solution is presented in terms of the dimensionless distance-time variable alpha and the dimensionless velocity variable beta. An eddy-viscosity model, similar to that of time-steady boundary layers, is applied to the inner and outer regions of the boundary layer. A turbulent Prandtl number equal to the molecular Prandtl number is used to relate the turbulent heat flux to the eddy viscosity. The numerical results, obtained by using the Gauss-Seidel line-relaxation method, indicate that a fully turbulent boundary layer relaxes faster to the final steady-state values of heat transfer and skin friction than a laminar boundary layer. The results also give a fairly good estimate of the local skin friction and heat transfer for near steady-flow conditions.
Consideration is given to a cold absorbing plasma in which the collision frequency is zero. Expressions are developed which relate the attenuation and the group and phase refractive indices. It is found that because the expressions for the group and phase refractive indices and the imaginary part of the refractive index are closely related in form, the attenuation is related to the difference between the group and phase paths. Numerical calculations have derived approximations which significantly increase the range of known approximations of this type.
The reported investigation is concerned with the resolution of a number of questions related to the ancient meteoritic component in Apollo 17 boulders. Numerical taxonomic methods have been adopted to objectively group the components. Only the nonvolatile siderophile elements have been used for the classification. Efforts were made to obtain data on the metal composition of breccias analyzed for trace elements, to determine if metal homogeneity was reflected in siderophile ratios. Thirty-one samples were analyzed of which twenty-eight have significant siderophile contents. It is concluded that highland breccias are largely the product of large basin-forming impacts. Highland soils are then produced by comminution of the breccias by small local impacts and micrometeorite bombardment. The long-lived component of bulk soils considered by Baedecker et al. (1974) is thought to contain a substantial micrometeorite contribution, plus assorted debris.
The space shuttle onboard navigation systems characteristics are described. A standard source of equations and numerical data for use in error analyses and mission simulations related to space shuttle development is reported. The sensor characteristics described are used for shuttle onboard navigation performance assessment. The use of complete models in the studies depend on the analyses to be performed, the capabilities of the computer programs, and the availability of computer resources.
Iterative methods for solving boundary value problems for systems of nonlinear partial differential equations are discussed. The methods involve subtracting an average of residuals from one approximation in order to arrive at a subsequent approximation. Two abstract methods in Hilbert space are given and application of these methods to quasilinear systems to give numerical schemes for such problems is demonstrated. Potential theoretic matters related to the iteration schemes are discussed.
A new algorithm for generating solution-adaptive grids (SAG) about airfoil configurations embedded in transonic flow is presented. The present SAG approach uses only the airfoil surface solution to recluster grid points on the airfoil surface, i.e., the reclustering problem is one dimension smaller than the flow-field calculation problem. Special controls automatically built into the elliptic grid generation procedure are then used to obtain grids with suitable interior behavior. This concept of redistributing grid points greatly simplifies the idea of solution-adaptive grids. Numerical results indicate significant improvements in accuracy for SAG grids relative to standard grids using the same number of points.
The IMAGES interactive image processing system was created specifically for undergraduate remote sensing education in geography. The system is interactive, relatively inexpensive to operate, almost hardware independent, and responsive to numerous users at one time in a time-sharing mode. Most important, it provides a medium whereby theoretical remote sensing principles discussed in lecture may be reinforced in laboratory as students perform computer-assisted image processing. In addition to its use in academic and short course environments, the system has also been used extensively to conduct basic image processing research. The flow of information through the system is discussed including an overview of the programs.