TraVerSE: Trajectory Veracity for Simple Errors
This package is a set of tools in the Python language for preprocessing GPS trajectory data gathered from consumer devices, to detect and flag potentially erroneous data.
Gerke, Brian↗
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Results for “SIMPLE”
Search indexed NASA NTRS and DOE OSTI research on propulsion, heat transfer, battery materials and energy systems. Follow report and document links to the original sources.
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TomoTwin: A simple digital twin for synchrotron tomography
A digital twin for synchrotron-based tomography for generating synthetic datasets from ground-truth phantoms. The code outputs greyscale projection images / tomographic volumes with realistic artifacts such as noise and phase-contrast and emulates their dependence on the acquisition parameters defining the beam and detector configuration. Some ground-truth phantoms are included with the code.
TEKAWADE, ANIKET↗
SHIFT (Simple Synthetic Distribution Feeder Generation Tool) [SWR-22-52]
SHIFT is a light weight software package that allows user to to build synthetic feeders around any locations in India. It uses open street data such as roads and buildings and distribution system design principles to generate distribution system model aka feeder model.
Duwadi, Kapil↗
Simple Low-process Radiation Simulation For Unity Game Engine
This is a set of Unity components that use the Unity game engine's transform and collision systems to provide a reasonably representative approximation of any number of unique radiation sources and the collective dose they deliver to a user.
Dunker, Jack [Idaho National Laboratory (INL), Ida↗
Can a simple dynamical system describe the interplay between drag and buoyancy in terrain-induced canopy flows?
Under non-neutral stratification and in the presence of topography the dynamics of turbulent flow within a canopy is not yet completely understood. This has, among others, serious implications for the measurement of surface – atmosphere exchange by means of eddy-covariance: for example the measurement of carbon dioxide fluxes are strongly influenced if drainage flows occur during night, when the flow within the canopy decouples from the flow aloft. An improved physical understanding of the behavior of scalars under canopy turbulence in complex terrain is urgently needed. In the present work, we investigate the dynamics of turbulent flow within sloped canopies, focusing on the slope wind and potential temperature. We concentrate on the presence of oscillatory behavior in the flow variables in terms of switching of flow regimes by conducting linear stability analysis. We revisit and correct the simplified theory that exists in the literature, which is based on the interplay between the drag force and the buoyancy. We find that the simplified description of this dynamical system cannot exhibit the observed richness of the dynamics. To augment the simplified dynamical system’s analysis, we make use of large-eddy simulation of a three-dimensional hill covered by a homogeneous forest and analyze the phase synchronization behavior of the buoyancy and drag forces in the momentum budget to explore the turbulent dynamics in more detail.
58 GEOSCIENCES↗
Dynamic substrate preferences predict metabolic properties of a simple microbial consortium
Not Available
59 BASIC BIOLOGICAL SCIENCES↗
Fluctuating light experiments and semi-automated plant phenotyping enabled by self-built growth racks and simple upgrades to the IMAGING-PAM
Not Available
59 BASIC BIOLOGICAL SCIENCES↗
A simple and highly efficient protocol for 13 C-labeling of plant cell wall for structural and quantitative analyses via solid-state nuclear magnetic resonance
Plant cell walls are made of a complex network of interacting polymers that play a critical role in plant development and responses to environmental changes. Thus, improving plant biomass and fitness requires the elucidation of the structural organization of plant cell walls in their native environment. The 13 C-based multi-dimensional solid-state nuclear magnetic resonance (ssNMR) has been instrumental in revealing the structural information of plant cell walls through 2D and 3D correlation spectral analyses. However, the requirement of enriching plants with 13 C limits the applicability of this method. To our knowledge, there is only a very limited set of methods currently available that achieve high levels of 13 C-labeling of plant materials using 13 CO 2 , and most of them require large amounts of 13 CO 2 in larger growth chambers. In this study, a simplified protocol for 13C-labeling of plant materials is introduced that allows ca 60% labeling of the cell walls, as quantified by comparison with commercially labeled samples. This level of 13 C-enrichment is sufficient for all conventional 2D and 3D correlation ssNMR experiments for detailed analysis of plant cell wall structure. The protocol is based on a convenient and easy setup to supply both 13 C-labeled glucose and 13 CO 2 using a vacuum-desiccator. The protocol does not require large amounts of 13 CO 2 . This study shows that our 13 C-labeling of plant materials can make the accessibility to ssNMR technique easy and affordable. The derived high-resolution 2D and 3D correlation spectra are used to extract structural information of plant cell walls. This helps to better understand the influence of polysaccharide-polysaccharide interaction on plant performance and allows for a more precise parametrization of plant cell wall models.
09 BIOMASS FUELS↗
Cholangiographic Tumor Classification for Simple Patient Selection Prior to Hepatopancreatoduodenectomy for Cholangiocarcinoma
Background: Hepatopancreatoduodenectomy (HPD) is employed for patients with laterally advanced cholangiocarcinoma. However, the survival benefit of this extended approach remains controversial. The aim of this study is to identify a tumor feature benefiting from HPD from the standpoint of long-term survival. Patients and Methods: Patients with cholangiocarcinoma who underwent HPD with curative intent between 2001 and 2017 were retrospectively analyzed. Tumors were radiologically classified by preoperative cholangiogram. Diffuse type was defined as significant tumor/stricture located from the hilar to intrapancreatic duct; localized type was defined as tumor otherwise. Univariable and multivariable analyses were performed to identify prognostic indicators. Results: Of 100 study patients, 28 (28%) patients had diffuse tumor type, while the remaining 72 (72%) patients had localized tumors. The former group showed significantly longer lateral length (43 versus 22 mm, P < 0.001) and more frequent pancreatic invasion (50% versus 32%, P = 0.110), advanced T classification (64% versus 49%, P = 0.185), and nodal metastasis (57% versus 47%, P = 0.504), compared with the latter group. The survival for patients with diffuse tumor type was significantly worse than that for patients with localized tumor type, with 5-year survival rates of 59.0% versus 26.3%, respectively (P = 0.003). Multivariable analysis identified four independent factors deteriorating long-term survival: cholangiographic diffuse tumor (P = 0.021), higher age (P = 0.020), percutaneous biliary drainage (P = 0.007), and portal vein resection (P = 0.007). Conclusions: Presurgical cholangiographic classification, diffuse or localized type, is a tumor-related factor closely associated with survival probability; therefore, it may be a useful feature for patient selection prior to HPD for cholangiocarcinoma.
62 RADIOLOGY AND NUCLEAR MEDICINE↗
Simple strategy for the simulation of axially symmetric large-area metasurfaces
Metalenses are composed of nanostructures for focusing light and have been widely explored in many exciting applications. However, their expanding dimensions pose simulation challenges. We propose a method to simulate metalenses in a timely manner using vectorial wave and ray tracing models. We sample the metalens’s radial phase gradient and locally approximate the phase profile by a linear phase response. Each sampling point is modeled as a binary blazed grating, employing the chosen nanostructure, to build a transfer function set. The metalens transmission or reflection is then obtained by applying the corresponding transfer function to the incoming field on the regions surrounding each sampling point. Fourier optics is used to calculate the scattered fields under arbitrary illumination for the vectorial wave method, and a Monte Carlo algorithm is used in the ray tracing formalism. We validated our method against finite-difference time domain simulations at 632 nm, and we were able to simulate metalenses larger than 3000 wavelengths in diameter on a personal computer.
Martins, Augusto (ORCID:0000000295546481)↗
Ten simple rules for drawing scientific comics
Institutions around the world are fighting to improve science communication all the time. From calls for journal papers to be simplified to encouraging scientists to take more of an active role through community engagement, there is an impetus to demystify and improve public understanding and engagement with science. Technology has greatly helped expand the range of learning styles that a lecturer can call on to reach people in new ways. Social media outlets like Twitter, Facebook, Instagram, and Tumblr have expanded the reach of science communication within and across scientific disciplines and to the lay public. Here, with all the videos, interactive quizzes, and instant feedback it can be easy to overlook one of the simplest methods for communicating complex ideas: comics.
99 GENERAL AND MISCELLANEOUS↗
Ten simple rules for managing laboratory information
Not Available
96 KNOWLEDGE MANAGEMENT AND PRESERVATION↗
Ten simple rules for recognizing data and software contributions in hiring, promotion, and tenure
Not Available
97 MATHEMATICS AND COMPUTING↗
Cloning should be simple: Escherichia coli DH5α-mediated assembly of multiple DNA fragments with short end homologies
Numerous DNA assembly technologies exist for generating plasmids for biological studies. Many procedures require complex in vitro or in vivo assembly reactions followed by plasmid propagation in recombination-impaired Escherichia coli strains such as DH5α, which are optimal for stable amplification of the DNA materials. Here we show that despite its utility as a cloning strain, DH5α retains sufficient recombinase activity to assemble up to six doublestranded DNA fragments ranging in size from 150 bp to at least 7 kb into plasmids in vivo . This process also requires surprisingly small amounts of DNA, potentially obviating the need for upstream assembly processes associated with most common applications of DNA assembly. In addition, we demonstrate the application of this process in cloning of various DNA fragments including synthetic genes, preparation of knockout constructs, and incorporation of guide RNA sequences in constructs for clustered regularly interspaced short palindromic repeats (CRISPR) genome editing. This consolidated process for assembly and amplification in a widely available strain of E. coli may enable productivity gain across disciplines involving recombinant DNA work.
59 BASIC BIOLOGICAL SCIENCES↗
A simple pyrocosm for studying soil microbial response to fire reveals a rapid, massive response by Pyronema species
Not Available
59 BASIC BIOLOGICAL SCIENCES↗
Metabolic multireactor: Practical considerations for using simple oxygen sensing optodes for high-throughput batch reactor metabolism experiments
We present a system for carrying out small batch reactor oxygen consumption experiments on water and sediment samples for environmental questions. In general, it provides several advantages that can help researchers achieve impactful experiments at relatively low costs and high data quality. In particular, it allows for multiple reactors to be operated and their oxygen concentrations to be measured simultaneously, providing high throughput and high time-resolution data, which can be advantageous. Most existing literature on similar small batch-reactor metabolic studies is limited to either only a few samples, or only a few time points per sample, which can restrict the ability for researchers to learn from their experiments. The oxygen sensing system is based very directly on the work of Larsen, et al. [2011], and similar oxygen sensing technology is widely used in the literature. As such we do not delve deeply into the specifics of the fluorescent dye sensing mechanism. Instead, we focus on practical considerations. We describe the construction and operation of the calibration and experimental systems, and answer many of the questions likely to come up when other researchers choose to build and operate a similar system themselves (questions we ourselves had when we first built the system). In this way, we hope to provide an approachable and easy to use research article that can help other researchers construct and operate a similar system that can be tailored to ask their own research questions, with a minimum of confusion and missteps along the way.
3D printing↗
xCDAT: A Python Package for Simple and Robust Analysis of Climate Data
xCDAT (Xarray Climate Data Analysis Tools) is an open-source Python package that extends Xarray (Hoyer & Hamman, 2017) for climate data analysis on structured grids. xCDAT streamlines analysis of climate data by exposing common climate analysis operations through a set of straightforward APIs. Some of xCDAT’s key features include spatial averaging, temporal averaging, and regridding. These features are inspired by the Community Data Analysis Tools (CDAT) library (Dean N. Williams et al., 2009) (D. N. Williams, 2014) (Doutriaux et al., 2019) and leverage powerful packages in the Xarray ecosystem including xESMF (Zhuang et al., 2023), xgcm (Abernathey et al., 2022), and CF xarray (Cherian et al., 2023). To ensure general compatibility across various climate models, xCDAT operates on datasets that are compliant with the Climate and Forecast (CF) metadata conventions (Hassell et al., 2017).
54 ENVIRONMENTAL SCIENCES↗