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At least 1,531 records · Page 85

A comparison of injector flow and spray characteristics of biodiesel with petrodiesel.

Performance and emission characteristics of compression ignition engines depend strongly on inner nozzle flow and spray behavior. These processes control the fuel air mixing, which in turn is critical for the combustion process. The differences in the physical properties of petrodiesel and biodiesel are expected to significantly alter the inner nozzle flow and spray structure and, thus, the performance and emission characteristics of the engine. In this study, the inner nozzle flow dynamics of these fuels are characterized by using the mixture-based cavitation model in FLUENT v6.3. Because of its lower vapor pressure, biodiesel was observed to cavitate less than petrodiesel. Higher viscosity of biodiesel resulted in loss of flow efficiency and reduction in injection velocity. Turbulence levels at the nozzle orifice exit were also lower for biodiesel. Using the recently developed KH-ACT model, which incorporates the effects of cavitation and turbulence in addition to aerodynamic breakup, the inner nozzle flow simulations are coupled with the spray simulations in a 'quasi-dynamic' fashion. Thus, the influence of inner nozzle flow differences on spray development of these fuels could be captured, in addition to the effects of their physical properties. Spray penetration was marginally higher for biodiesel, while cone angle was lower, which was attributed to its poor atomization characteristics. The computed liquid lengths of petrodiesel and biodiesel were compared with data from Sandia National Laboratories. Liquid lengths were higher for biodiesel due to its higher boiling temperature and heat of vaporization. Though the simulations captured this trend well, the liquid lengths were underpredicted, which was attributed to uncertainty about the properties of biodiesel used in the experiments. Parametric studies were performed to determine a single parameter that could be used to account for the observed differences in the fuel injection and spray behavior of petrodiesel and biodiesel; fuel temperature seems to be the best parameter to tune.

33 ADVANCED PROPULSION SYSTEMS↗

A phase-field formulation for dynamic cohesive fracture

We extend a phase-field/gradient damage formulation for cohesive fracture to the dynamic case. The model is characterized by a regularized fracture energy that is linear in the damage field, as well as non-polynomial degradation functions. Two categories of degradation functions are examined, and a process to derive a given degradation function based on a local stress-strain response in the cohesive zone is presented. The resulting model is characterized by a linear elastic regime prior to the onset of damage, and controlled strain-softening thereafter. The governing equations are derived according to macro- and microforce balance theories, naturally accounting for the irreversible nature of the fracture process by introducing suitable constraints for the kinetics of the underlying microstructural changes. The model is complemented by an efficient staggered solution scheme based on an augmented Lagrangian method. Numerical examples demonstrate that the proposed model is a robust and effective method for simulating cohesive crack propagation, with particular emphasis on dynamic fracture.

42 ENGINEERING↗

Subharmonic Oscillations and Chaos in Dynamic Atomic Force Microscopy

The increasing use of dynamic atomic force microscopy (d-AFM) for nanoscale materials characterization calls for a deeper understanding of the cantilever dynamics influencing scan stability, predictability, and image quality. Model development is critical to such understanding. Renormalization of the equations governing d- AFM provides a simple interpretation of cantilever dynamics as a single spring and mass system with frequency dependent cantilever stiffness and damping parameters. The renormalized model is sufficiently robust to predict the experimentally observed splitting of the free-space cantilever resonance into multiple resonances upon cantilever-sample contact. Central to the model is the representation of the cantilever sample interaction force as a polynomial expansion with coefficients F(sub ij) (i,j = 0, 1, 2) that account for the effective interaction stiffness parameter, the cantilever-to-sample energy transfer, and the amplitude of cantilever oscillation. Application of the Melnikov method to the model equation is shown to predict a homoclinic bifurcation of the Smale horseshoe type leading to a cascade of period doublings with increasing drive displacement amplitude culminating in chaos and loss of image quality. The threshold value of the drive displacement amplitude necessary to initiate subharmonic generation depends on the acoustic drive frequency, the effective damping coefficient, and the nonlinearity of the cantilever-sample interaction force. For parameter values leading to displacement amplitudes below threshold for homoclinic bifurcation other bifurcation scenarios can occur, some of which lead to chaos.

Cantrell, John H.↗

Hydrogeological and multi-isotopic approach to define nitrate pollution and denitrification processes in a coastal aquifer (Sardinia, Italy)

Agricultural coastal areas are frequently affected by the superimposition of various processes, with a combination of anthropogenic and natural sources, which degrade groundwater quality. In the coastal multi-aquifer system of Arborea (Italy)—a reclaimed morass area identified as a nitrate vulnerable zone, according to Nitrate Directive 91/676/EEC—intensive agricultural and livestock activities contribute to substantial nitrate contamination. For this reason, the area can be considered a bench test for tuning an appropriate methodology aiming to trace the nitrate contamination in different conditions. An approach combining environmental isotopes, water quality and hydrogeological indicators was therefore used to understand the origins and attenuation mechanisms of nitrate pollution and to define the relationship between contaminant and groundwater flow dynamics through the multi-aquifer characterized by sandy (SHU), alluvial (AHU), and volcanic hydrogeological (VHU) units. Various groundwater chemical pathways were consistent with both different nitrogen sources and groundwater dynamics. Isotope composition suggests a mixed source for nitrate (organic and synthetic fertilizer), especially for the AHU and SHU groundwater. Moreover, marked heterotrophic denitrification and sulfate reduction processes were detected; although, for the contamination related to synthetic fertilizer, the attenuation was inefficient at removing NO{sub 3}{sup −} to less than the human consumption threshold of 50 mg/L. Various factors contributed to control the distribution of the redox processes, such as the availability of carbon sources (organic fertilizer and the presence of lagoon-deposited aquitards), well depth, and groundwater flow paths. The characterization of these processes supports water-resource management plans, future actions, and regulations, particularly in nitrate vulnerable zones.

54 ENVIRONMENTAL SCIENCES↗

Structure and Dynamics of Domains in Ferroelectric Nanostructures – Phase-Field Modeling (Final Technical Report)

Domain pattern formation is one of the most common phenomena in nature and is a topic of immense interest in many fields ranging from materials science and physics to chemistry and biology. This DOE sponsored research project explored the basic science concerning the thermodynamic stability of mesoscale polarization domain patterns and their temporal evolution mechanisms during formation and subsequent switching in ferroelectric nanostructures and heterostructures. The project employed the computational phase-field method in combination of microelasticity and electrostatic theories. The research was carried out in close collaboration with a number of experimental groups who used High Resolution Transmission Electron Microscopy (HRTEM), in situ TEM with Scanning Probe Microscopy (SPM), or Piezoresponse Force Microscopy (PFM) to characterize the domain structures and dynamics of ferroelectric thin films and heterostructures and who grow high-quality ferroelectric and multiferroic thin films using advanced growth techniques such as Molecular Beam Epitaxy (MBE), Pulsed Laser Deposition (PLLD), and sputtering. The research efforts of the project help establish the phase-field method as the most powerful method for understanding and predicting domain structures in ferroelectric thin films and nanostructures. The findings of the project led to the basic understanding of stability and switching mechanisms of ferroelectric domains under different mechanical boundary conditions and under either homogeneous capacitor configurations or local fields using metallic probes as electrodes and the emergence of charged domain walls during domain switching. The project predicted the spatial length scales, temperature ranges, and electromechanical conditions for different polar states in heterostructures and guided the discovery of both transient and stable novel polarization states containing vortex lattices in oxide superlattices. The project resulted in 134 journal publications and 6 PhD theses with all the PhD graduates currently working in either academia or industry within the United States. The basic understanding on the stability of mesoscale polar states and pattern evolution achieved by the project improved our ability to control and engineer properties of ferroelectric thin films and heterostructures for potential applications in nanoscale electronic devices.

36 MATERIALS SCIENCE↗

Groundwater management of a highly dynamic karst by assessing baseflow and quickflow with a rainfall-discharge model (Dardennes springs, SE France)

This paper aims at characterizing the groundwater flow in a highly dynamic karst aquifer using a global modeling approach based on rainfall and spring discharge time series. The Dardennes aquifer (SE France) was studied as it is used for drinking water supply and it also produces karst flash floods that increase the flood hazard downstream in urban areas. Three years of data were available, including a normal rainy year, a wet year and a dry year. Modeling was performed with the new platform KarstMod, a rainfall-discharge model with calibration tools. The Dardennes aquifer model was structured with three interconnected reservoirs: Epikarst, Matrix, and Conduit. Using this modeling approach, we were able to determine the groundwater hydrograph separation of the karst spring discharge, at the annual scale and at the event scale (flood). This gives insight into the low flow (Matrix) available for the drinking water demand and the fast flow (Conduit) that generates flash floods. In such a dynamic aquifer, part of the water budget cannot be accounted for by water resources as fast flow is not stored within the aquifer and is not available for the drinking water demand. The results were compared with the current groundwater management to determine whether the withdrawal is sustainable. Depending on whether it is a wet or a dry year, the proportion of slow flow ranges from 27 to 61% of the total discharge, respectively. During floods in high water periods, the proportion of quickflow increases drastically up to more than 90% of the spring discharge. In the case of a 300 mm/d simulated Mediterranean rainfall event, the mean daily peak value may reach 74 m 3 /s. This discharge can be reduced if the aquifer is previously depleted, which increases the storage within the aquifer. Coupling the geological context and the model results opens up future perspectives for the active management of the karst aquifer.

58 GEOSCIENCES↗

12.5kW Advanced Electric Propulsion System Thruster Development Testing

Since 2012, NASA has been developing the12.5kW Hall Effect Rocket with Magnetic Shielding (HERMeS)thruster to serve the need for deep space propulsion. Aerojet Rocketdyne (AR)is developing the HERMeS Hall Current Thruster (HCT)into a flight capable design through the Advanced Electric Propulsion System (AEPS) program. In execution of this program, Aerojet Rocketdyne has designed, built and begun test of two Engineering Test Unit (ETU)HCTs, designated ETU-1 and ETU-2. This paper presents some of the preliminary results from theETU-1 thruster and draws comparisons to previous HERMeS Technology Demonstration Units (TDUs)and theETU-2 characterization unit. The ETU-1 thruster serves to evaluate the ETU design against dynamic and thermal environments while ETU-2 undergoes operational characterization and wear testing. The thruster has been exposed to acceptance and qualification-level vibration and shock testing and has undergone acceptance and characterization hot-firing to evaluate thruster performance after exposure to dynamic environments. The results have demonstrated that the dynamic environments have not had an adverse effect on performance and demonstrated that stability and operating characteristics remain unaffected. Together, ETU-1 and ETU-2 HCTs have demonstrated operating performance and characteristics in-family with each other and with the NASA HERMeS Technology Demonstration Units.

AEPS↗

Outer membrane vesicles catabolize lignin-derived aromatic compounds in Pseudomonas putida KT2440

Lignin is an abundant and recalcitrant component of plant cell walls. While lignin degradation in nature is typically attributed to fungi, growing evidence suggests that bacteria also catabolize this complex biopolymer. However, the spatiotemporal mechanisms for lignin catabolism remain unclear. Improved understanding of this biological process would aid in our collective knowledge of both carbon cycling and microbial strategies to valorize lignin to value-added compounds. Here, we examine lignin modifications and the exoproteome of three aromatic–catabolic bacteria: Pseudomonas putida KT2440, Rhodoccocus jostii RHA1, and Amycolatopsis sp. ATCC 39116. P. putida cultivation in lignin-rich media is characterized by an abundant exoproteome that is dynamically and selectively packaged into outer membrane vesicles (OMVs). Interestingly, many enzymes known to exhibit activity toward lignin-derived aromatic compounds are enriched in OMVs from early to late stationary phase, corresponding to the shift from bioavailable carbon to oligomeric lignin as a carbon source. In vivo and in vitro experiments demonstrate that enzymes contained in the OMVs are active and catabolize aromatic compounds. Taken together, this work supports OMV-mediated catabolism of lignin-derived aromatic compounds as an extracellular strategy for nutrient acquisition by soil bacteria and suggests that OMVs could pote

biological funneling↗

Dynamic neutron scattering from conformational dynamics. II. Application using molecular dynamics simulation and Markov modeling

Here, neutron scattering experiments directly probe the dynamics of complex molecules on the sub pico- to microsecond time scales. However, the assignment of the relaxations seen experimentally to specific structural rearrangements is difficult, since many of the underlying dynamical processes may exist on similar timescales. In an accompanying article, we present a theoretical approach to the analysis of molecular dynamics simulations with a Markov State Model (MSM) that permits the direct identification of structural transitions leading to each contributing relaxation process. Here, we demonstrate the use of the method by applying it to the configurational dynamics of the well-characterized alanine dipeptide. A practical procedure for deriving the MSM from an MD is introduced. The result is a 9-state MSM in the space of the backbone dihedral angles and the side-chain methyl group. The agreement between the quasielastic spectrum calculated directly from the atomic trajectories and that derived from the Markov state model is excellent. The dependence on the wavevector of the individual Markov processes is described. The procedure means that it is now practicable to interpret quasielastic scattering spectra in terms of well-defined intramolecular transitions with minimal a priori assumptions as to the nature of the dynamics taking place.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Environmental Contributions to Proton Sharing in Protein Low-Barrier Hydrogen Bonds

Hydrogen bonds (H-bonds) are central to biomolecular structure and dynamics. Although H-bonds are typically characterized by well-defined proton positions, proton delocalization has been proposed to play a role in facilitating enzyme catalysis and allostery in some systems. Experimentally locating protons is difficult, hampering the study of proton mobility in H-bonds. We used neutron crystallography, atomic resolution X-ray bond length analysis, and large quantum mechanics/molecular mechanics-Born–Oppenheimer molecular dynamics (QM/MM-BOMD) simulations to comprehensively characterize the shared proton/deuteron in a Glu–Asp low-barrier hydrogen bond (LBHB) in the bacterial protein YajL that is a conventional H-bond in the homologous disease-associated human protein DJ-1. X-ray bond length analysis of protiated and perdeuterated DJ-1 and YajL shows no significant effect of deuteron substitution on these carboxylic acid-carboxylate H-bonds but does reveal an effect at the active site glutamic acid near a cysteine thiolate. Residues in an H-bonded network that might favor LBHB formation in YajL were interrogated by the mutation of homologous residues in DJ-1. A distal DJ-1 substitution increases proton delocalization in the Glu–Asp H-bond, demonstrating that mutations within extended H-bond networks can modulate proton transfer barriers in carboxylic acid-carboxylate H-bonds. In addition, proton mobility in the H-bond is correlated with dimer-spanning motions in the QM/MM-BOMD simulations of YajL and DJ-1. Our results show that proton delocalization can be tuned using combined bioinformatic, structural, and computational information, opening the possibility of using engineered proton delocalization as a probe of H-bonding environments and as a tool to test hypotheses about LBHB function.

Lin, Jiusheng [University of Nebraska, Lincoln, NE↗

Quantifying Information without Entropy: Identifying Intermittent Disturbances in Dynamical Systems

A system’s response to disturbances in an internal or external driving signal can be characterized as performing an implicit computation, where the dynamics of the system are a manifestation of its new state holding some memory about those disturbances. Identifying small disturbances in the response signal requires detailed information about the dynamics of the inputs, which can be challenging. This paper presents a new method called the Information Impulse Function (IIF) for detecting and time-localizing small disturbances in system response data. The novelty of IIF is its ability to measure relative information content without using Boltzmann’s equation by modeling signal transmission as a series of dissipative steps. Since a detailed expression of the informational structure in the signal is achieved with IIF, it is ideal for detecting disturbances in the response signal, i.e., the system dynamics. Those findings are based on numerical studies of the topological structure of the dynamics of a nonlinear system due to perturbated driving signals. The IIF is compared to both the Permutation entropy and Shannon entropy to demonstrate its entropy-like relationship with system state and its degree of sensitivity to perturbations in a driving signal.

42 ENGINEERING↗

Characterization of Complex Interactions at the Gas–Solid Interface with in Situ Spectroscopy: The Case of Nitrogen-Functionalized Carbon

Interactions at the gas-solid interface drive physicochemical processes in many energy and environmental applications; yet, the challenges associated with characterization and development of these dynamic interactions in complex systems limit progress in developing effective materials. Thus, structure-property-performance correlations greatly depend on the development of advanced techniques and analysis methods for the investigation of gas-solid interactions. In this work, adsorption behavior of O 2 and humidified O 2 on nitrogen-functionalized carbon (N-C) materials was investigated to provide a better understanding of the role of nitrogen species in the oxygen reduction reaction (ORR). N-C materials were produced by solvothermal synthesis and N-ion implantation, resulting in a set of materials with varied nitrogen amount and speciation in carbon matrices with different morphologies. Adsorption behavior of the N-C samples was characterized by in situ diffuse reflectance infrared Fourier-transform spectroscopy (DRIFTS) and ambient pressure X-ray photoelectron spectroscopy (AP-XPS) experiments. A novel analysis approach for the interpretation of AP-XPS data was developed, allowing both the determination of overall adsorption behavior of each N-C material and identification of which nitrogen species were responsible for adsorption. The complementary information provided by in situ DRIFTS and AP-XPS suggests that O 2 adsorption primarily takes place on either electron-rich nitrogen species like pyridine, hydrogenated nitrogen species, or graphitic nitrogen. Adsorption of O 2 and H 2 O occurs competitively on solvothermally prepared N-Cs, whereas adsorption of H 2 O and O 2 occurs at different sites on N-ion implanted N-Cs, highlighting the importance of tuning the composition of N-C materials to promote the most efficient ORR pathway.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Characterization of three phases of liquid carbon by tight-binding molecular dynamics simulations

In this work, we have performed systematic molecular dynamics simulations to study the structures of liquid carbon at 5000 K with the weight density ranging from 1.4 to 3.5 g cm –3 , using a three-center tight-binding potential of carbon. The simulation results show that the bonding characteristics of the liquid changes predominately from twofold to threefold, and then to fourfold coordination as the density increases. Signals of two structural changes at the densities of about 1.9 and 3.0 g cm –3 respectively are revealed by the slope changes in the density dependence of structural, electronic and dynamical properties. Our simulation results suggest that there are three distinct liquid carbon phases in this density range. However, further thermodynamics calculations, e.g. , free energy calculations, would be required to clarify the possible liquid–liquid transitions.

37 INORGANIC, ORGANIC, PHYSICAL, AND ANALYTICAL CH↗

Genetic characterization of a Sorghum bicolor multiparent mapping population emphasizing carbon-partitioning dynamics

Sorghum bicolor, a photosynthetically efficient C4 grass, represents an important source of grain, forage, fermentable sugars, and cellulosic fibers that can be utilized in myriad applications ranging from bioenergy to bioindustrial feedstocks. Sorghum’s efficient fixation of carbon per unit time per unit area per unit input has led to its classification as a preferred biomass crop highlighted by its designation as an advanced biofuel by the U.S. Department of Energy. Due to its extensive genetic diversity and worldwide colonization, sorghum has considerable diversity for a range of phenotypes influencing productivity, composition, and sink/source dynamics. To dissect the genetic basis of these key traits, we present a sorghum carbon-partitioning nested association mapping (NAM) population generated by crossing 11 diverse founder lines with Grassl as the single recurrent female. By exploiting existing variation among cellulosic, forage, sweet, and grain sorghum carbon partitioning regimes, the sorghum carbon-partitioning NAM population will allow the identification of important biomass-associated traits, elucidate the genetic architecture underlying carbon partitioning and improve our understanding of the genetic determinants affecting unique phenotypes within Poaceae. We contrast this NAM population with an existing grain population generated using Tx430 as the recurrent female. Genotypic data are assessed for quality by examining variant density, nucleotide diversity, linkage decay, and are validated using pericarp and testa phenotypes to map known genes affecting these phenotypes. We release the 11-family NAM population along with corresponding genomic data for use in genetic, genomic, and agronomic studies with a focus on carbon-partitioning regimes.

multiparental populations↗